Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Forward (+)

39973102 .. 39976713

Gene Structure 3612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGGCTCAATTATCGAGCTGCACTTAGCAATATCACCAATTTCAAAAGAGAGGCTTTTGGAAAGCATGCTTCTCAGTTCTCACTTTCTCAGTCAATATTAGAATACTCTCTCTTTCAGAGAAGACGCAAGTTGATTGAAGGTTGGATGGCCAAACCAATATGGAAGCAGGCTGACCCTCGATTTGTATGGAACAAAAATCTTTTGGATGAACTTATCGAGTTCAAGGTAAGATTTTCCTACTGTAAGGTACGATTAGTTCAAGGTCCAAATTATGTCGTTTCAGTTCCTTTAGTGTACGAGACACTTTACAGGGGGATCCAGAAACAGATTTCTACAAGTTCTAAAGCTCGTAAGCTTATTGCACTTTCATTCCTAAGGATCAGTTTGGCATACATGGAGTTTAAGAGAATTTATGAGAGTCATGTTCCGTGGCATTGGTGTTCTGAAGTTTGCTGCTTTGTTAGTTACTATTCTATGTATGGACATTTCAAGAAGCTGGATGAAGAGATTAAAAGGGGAGCTGCATCTTTGGAAGTAGAAGCCCAACTATCTCAGGGGTGGTCATTTTCACATGATCCATTGCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0008150 GO:0008152 GO:0008610 GO:0008922 GO:0009058 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015645 GO:0016053 GO:0016874 GO:0016877 GO:0016878 GO:0019752 GO:0030497 GO:0031967 GO:0031975 GO:0032787 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00071 ko01100 ko01212 ko02024 ko03320 ko04146 ko04216 ko04714 ko04920 map00061 map00071 map01100 map01212 map02024 map03320 map04146 map04216 map04714 map04920

Pfam Domains

Protein Families

AMP-binding

Protein Analysis

197

Amino Acids

23.24

Weight (kDa)

9.6

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	313, 326, 389, 572
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	1 cut(s)	411
AcuI	CTGAAG	1 cut(s)	468
AfaI	GTAC	2 cut(s)	252, 299
AgsI	TTSAA	5 cut(s)	46, 140, 226, 263, 493
AluBI	AGCT	5 cut(s)	20, 350, 358, 499, 524
AluI	AGCT	5 cut(s)	20, 350, 358, 499, 524
Alw26I	GTCTC	1 cut(s)	296
AlwI	GGATC	4 cut(s)	313, 326, 389, 572
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	20, 456, 524
ApoI	RAATTY	1 cut(s)	411
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AspS9I	GGNCC	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	7, 443, 511
BccI	CCATC	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	296
BisI	GCNGC	3 cut(s)	21, 457, 525
BlsI	GCNGC	3 cut(s)	22, 458, 526
Bme18I	GGWCC	1 cut(s)	266
BmgT120I	GGNCC	1 cut(s)	266
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	431
Bse21I	CCTNAGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	581
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	3 cut(s)	153, 214, 508
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	3 cut(s)	89, 104, 569
BseXI	GCAGC	3 cut(s)	7, 443, 511
BsgI	GTGCAG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	318, 381, 577
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	3 cut(s)	88, 103, 568
BspLI	GGNNCC	1 cut(s)	320
BspPI	GGATC	4 cut(s)	313, 326, 389, 572
BsrDI	GCAATG	1 cut(s)	581
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	3 cut(s)	318, 381, 577
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	69, 171
BstDEI	CTNAG	5 cut(s)	26, 75, 90, 377, 555
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	153, 214, 508
BstKTI	GATC	3 cut(s)	321, 384, 580
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	3 cut(s)	318, 381, 577
BstNSI	RCATGY	1 cut(s)	71
BstV1I	GCAGC	3 cut(s)	7, 443, 511
BstV2I	GAAGAC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
Bsu36I	CCTNAGG	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	153, 214, 508
Cac8I	GCNNGC	2 cut(s)	69, 171
Cfr13I	GGNCC	1 cut(s)	266
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	251, 298
CviAII	CATG	4 cut(s)	68, 397, 425, 575
CviQI	GTAC	2 cut(s)	251, 298
DdeI	CTNAG	5 cut(s)	26, 75, 90, 377, 555
DpnI	GATC	3 cut(s)	320, 383, 579
DpnII	GATC	3 cut(s)	318, 381, 577
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	266
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	377
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	4 cut(s)	71, 400, 428, 578
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FatI	CATG	4 cut(s)	67, 396, 424, 574
Fnu4HI	GCNGC	3 cut(s)	21, 457, 525
FokI	GGATG	3 cut(s)	160, 221, 515
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	3 cut(s)	21, 457, 525
GluI	GCNGC	3 cut(s)	21, 457, 525
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	71, 400, 428, 578
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	421
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	120, 448
Hpy188III	TCNNGA	2 cut(s)	322, 493
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	23, 365, 527, 586
HpyF3I	CTNAG	5 cut(s)	26, 75, 90, 377, 555
Hsp92II	CATG	4 cut(s)	71, 400, 428, 578
Kzo9I	GATC	3 cut(s)	318, 381, 577
LmnI	GCTCC	1 cut(s)	521
LpnPI	CCDG	5 cut(s)	155, 298, 335, 485, 542
Lsp1109I	GCAGC	3 cut(s)	7, 443, 511
LweI	GCATC	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	3 cut(s)	320, 383, 579
MboI	GATC	3 cut(s)	318, 381, 577
MboII	GAAGA	2 cut(s)	135, 518
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	4 cut(s)	10, 40, 271, 411
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	2 cut(s)	46, 189
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	2 cut(s)	405, 513
Msp20I	TGGCCA	1 cut(s)	152
NdeII	GATC	3 cut(s)	318, 381, 577
NlaIII	CATG	4 cut(s)	71, 400, 428, 578
NlaIV	GGNNCC	1 cut(s)	320
NspI	RCATGY	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	22, 458, 526
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	266
PsrI	GAACNNNNNNTAC	2 cut(s)	243, 275
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	252, 299
RsaNI	GTAC	2 cut(s)	251, 298
SaqAI	TTAA	2 cut(s)	405, 513
SatI	GCNGC	3 cut(s)	21, 457, 525
Sau3AI	GATC	3 cut(s)	318, 381, 577
Sau96I	GGNCC	1 cut(s)	266
SchI	GAGTC	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	9 cut(s)	22, 145, 231, 252, 268, 352, 360, 501, 526
SfaNI	GCATC	1 cut(s)	536
SinI	GGWCC	1 cut(s)	266
SphI	GCATGC	1 cut(s)	71
Sse9I	AATT	4 cut(s)	10, 40, 271, 411
SspI	AATATT	1 cut(s)	99
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	3 cut(s)	16, 181, 219
TasI	AATT	4 cut(s)	10, 40, 271, 411
Tru1I	TTAA	2 cut(s)	405, 513
Tru9I	TTAA	2 cut(s)	405, 513
TseI	GCWGC	3 cut(s)	20, 456, 524
TspDTI	ATGAA	3 cut(s)	225, 360, 519
TspGWI	ACGGA	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.