Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

25184543 .. 25185928

Gene Structure 1386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1171200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGTACCACCAGATCAGATGGATTTTTATCAGCTGACCCTCGATTTGTTTGGAACAGAAATCTTTTGGACGAACTTATCGAGTATAAGACTGCACAGCTAAAGCTAAAAGGCTCATCTGCCACACTTACGATAGTCTCAAGGAGGTGTACCATGCGTCTAGGGACAAGAATGTGGAGAAGAGGAGCGAACCTTGATGGAGATGTAGCTAATTTTATTGAAGCTGAGCAGTTGGTGGAGACTGAAGGTTTCCAGTCCTCATTATTGCAGATTCGAGGTTCAATTCCGCTTCTTTGGGAGCAAATTGTTGACTTGAGCTATAAACCACAACTTAGAATTATTACTCATGAGCAGACGGTAATTTGTTGCCAGAGATGCAAATCCATCCCTTTTTACTCTTTTCCTGGCTTCATGATACAGCTCCCTTGTTTGAGTAGTGTTCTGAATTTTCCCATCTACTTACAGTCAAATGTTGTGGAGCGCCATTTTTTTTTCTTTCCCAAAGATATGGAGAGACAATGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

176

Amino Acids

20.39

Weight (kDa)

8.66

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	9 - 120	9.9e-29	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	445
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	7, 151
AgsI	TTSAA	2 cut(s)	221, 282
AjnI	CCWGG	1 cut(s)	403
AluBI	AGCT	7 cut(s)	35, 100, 106, 209, 224, 318, 421
AluI	AGCT	7 cut(s)	35, 100, 106, 209, 224, 318, 421
Alw26I	GTCTC	3 cut(s)	142, 233, 508
ApoI	RAATTY	1 cut(s)	445
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AspLEI	GCGC	1 cut(s)	483
BccI	CCATC	4 cut(s)	14, 191, 392, 461
BciT130I	CCWGG	1 cut(s)	405
BcoDI	GTCTC	3 cut(s)	142, 233, 508
BfaI	CTAG	1 cut(s)	161
BfoI	RGCGCY	1 cut(s)	484
BlpI	GCTNAGC	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	365
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	2 cut(s)	124, 334
BsaBI	GATNNNNATC	2 cut(s)	28, 379
Bse1I	ACTGG	1 cut(s)	253
Bse8I	GATNNNNATC	2 cut(s)	28, 379
BseBI	CCWGG	1 cut(s)	405
BseGI	GGATG	1 cut(s)	384
BseJI	GATNNNNATC	2 cut(s)	28, 379
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	178
BsmAI	GTCTC	3 cut(s)	142, 233, 508
BsmFI	GGGAC	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	14
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	217
BspHI	TCATGA	2 cut(s)	346, 411
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	2 cut(s)	358, 465
Bst6I	CTCTTC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	225, 332
BstF5I	GGATG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	483
BstKTI	GATC	1 cut(s)	17
BstMAI	GTCTC	3 cut(s)	142, 233, 508
BstMBI	GATC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNI	CCWGG	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	384
CciI	TCATGA	2 cut(s)	346, 411
CfoI	GCGC	1 cut(s)	483
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	6, 150
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	3 cut(s)	154, 347, 412
CviJI	RGCY	9 cut(s)	35, 100, 106, 114, 209, 224, 318, 408, 421
CviKI_1	RGCY	9 cut(s)	35, 100, 106, 114, 209, 224, 318, 408, 421
CviQI	GTAC	2 cut(s)	6, 150
DdeI	CTNAG	2 cut(s)	225, 332
DpnI	GATC	1 cut(s)	16
DpnII	GATC	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	403
FaeI	CATG	3 cut(s)	157, 350, 415
FaiI	YATR	6 cut(s)	87, 155, 321, 348, 413, 509
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	3 cut(s)	153, 346, 411
FokI	GGATG	1 cut(s)	371
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	482
HaeII	RGCGCY	1 cut(s)	484
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	483
Hin1II	CATG	3 cut(s)	157, 350, 415
Hin6I	GCGC	1 cut(s)	481
HinP1I	GCGC	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	150, 310
Hpy188I	TCNGA	2 cut(s)	19, 444
Hpy188III	TCNNGA	2 cut(s)	347, 412
Hpy8I	GTNNAC	2 cut(s)	150, 310
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	2 cut(s)	358, 465
HpyCH4V	TGCA	3 cut(s)	95, 268, 378
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	2 cut(s)	225, 332
Hsp92II	CATG	3 cut(s)	157, 350, 415
HspAI	GCGC	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	14
LmnI	GCTCC	4 cut(s)	185, 298, 426, 478
LpnPI	CCDG	5 cut(s)	25, 266, 383, 390, 417
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	1 cut(s)	161
MalI	GATC	1 cut(s)	16
MboI	GATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	192
MluCI	AATT	6 cut(s)	211, 282, 303, 336, 360, 445
MnlI	CCTC	5 cut(s)	51, 138, 176, 268, 269
MspA1I	CMGCKG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	1 cut(s)	375
NdeII	GATC	1 cut(s)	14
NlaIII	CATG	3 cut(s)	157, 350, 415
PagI	TCATGA	2 cut(s)	346, 411
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	403
PspGI	CCWGG	1 cut(s)	403
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	2 cut(s)	7, 151
RsaNI	GTAC	2 cut(s)	6, 150
Sau3AI	GATC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	405
SfaNI	GCATC	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	139, 313
SmoI	CTYRAG	2 cut(s)	139, 313
Sse9I	AATT	6 cut(s)	211, 282, 303, 336, 360, 445
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	358, 465
TaqI	TCGA	3 cut(s)	43, 81, 274
TasI	AATT	6 cut(s)	211, 282, 303, 336, 360, 445
TfiI	GAWTC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	400
XapI	RAATTY	1 cut(s)	445
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.