Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007208

Physical Location & Seq

Genomic Coordinates Reverse (-)

25067247 .. 25068076

Gene Structure 830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1169500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCCATACTTTGTGCAATTTTTTGGTTGTCAAGTGATTCTCCCTTCCCCTTTATCCAAAGGATTTTTTGTCAACACTAGAAGACGAGACAGCGCTGACCCTCGATTTGTTTGGAACAGAAATCTTTTGGACGAACTTATCGAGTATAAGCTTGATGGGTTCATTATTCCTCTAATACAAGGAAAGATCCTGAATTTACTGATTTGTTATGTATTGAGATTCAGAGTTTACGTGAGTAATATGTTATGGTGTTCCTTAACCTACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0031984 GO:0034596 GO:0042175 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043812 GO:0044237 GO:0044238 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052744 GO:0052866 GO:0071704 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Syja_N

Protein Analysis

90

Amino Acids

10.6

Weight (kDa)

9.22

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syja_N	PF02383	26 - 63	4.8e-06	SacI homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51830
fragaria_vesca	FvH4_6g11241
malus_domestica	MD12G1169400.v1.1 MD12G1169500.v1.1 MD12G1171200.v1.1 MD12G1171300.v1.1
pyrus_communis	pycom04g14100 pycom12g10980 pycom12g16070 pycom12g16170 pycom16g21050
rosa_chinensis	RchiOBHm_Chr1g0321071 RchiOBHm_Chr1g0352571 RchiOBHm_Chr3g0454191 RchiOBHm_Chr3g0462761 RchiOBHm_Chr4g0407511 RchiOBHm_Chr7g0208621
rosa_laevigata	RLG00000017724 RLG00000035314
rosa_multiflora	Rmu_co8257277.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415040 Rroxscaffold_7G00196780
rosa_samantha	Rh1AG112600 Rh1CG178800 Rh7AG239800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	193
AfeI	AGCGCT	1 cut(s)	94
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	181
Aor51HI	AGCGCT	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	193
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AspLEI	GCGC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	88
BccI	CCATC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	88
BsaAI	YACGTR	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	181
BssMI	GATC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	232
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	81
BstMBI	GATC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
CfoI	GCGC	1 cut(s)	95
CviJI	RGCY	1 cut(s)	151
CviKI_1	RGCY	1 cut(s)	151
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eco47III	AGCGCT	1 cut(s)	94
FaiI	YATR	5 cut(s)	7, 147, 210, 242, 247
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	96
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	37, 219
Hpy166II	GTNNAC	2 cut(s)	73, 229
Hpy188I	TCNGA	1 cut(s)	224
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	73, 229
HpyAV	CCTTC	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	16
HpySE526I	ACGT	1 cut(s)	231
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	186
LpnPI	CCDG	1 cut(s)	203
MaeI	CTAG	1 cut(s)	78
MaeII	ACGT	1 cut(s)	231
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	1 cut(s)	186
MluCI	AATT	2 cut(s)	17, 193
MnlI	CCTC	2 cut(s)	111, 180
MseI	TTAA	2 cut(s)	257, 268
NdeII	GATC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	37, 219
Ppu21I	YACGTR	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	186
SaqAI	TTAA	2 cut(s)	257, 268
Sau3AI	GATC	1 cut(s)	186
SetI	ASST	3 cut(s)	153, 234, 263
SgeI	CNNG	9 cut(s)	44, 90, 98, 114, 154, 164, 191, 202, 244
Sse9I	AATT	2 cut(s)	17, 193
SspMI	CTAG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	2 cut(s)	103, 141
TasI	AATT	2 cut(s)	17, 193
TfiI	GAWTC	2 cut(s)	37, 219
Tru1I	TTAA	2 cut(s)	257, 268
Tru9I	TTAA	2 cut(s)	257, 268
TspDTI	ATGAA	1 cut(s)	151
XapI	RAATTY	1 cut(s)	193
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.