FvH4_6g16090

adenosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002092
Physical Location & Seq
Forward (+)
10120037 .. 10123636
3600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16090.t2

Sequence Viewer

Length: 1026 bp
ATGGCCTCCGAAGGAATCCTGTTGGGGATGGGTAACCCCCTCCTTGACATCTCTGCCGTTGTCGACGAAGACTTCTTGAAAAAATATGATCTCCAACTCAACAATGCAATTCTTGCAGAGGACAAGCACTTACCCATATATGAGGAACTTTGTTCCAACCCTAACGTGGAGTACACTGCTGGAGGTGCTACTAACAAATCCATTCGAGTTGCCCAGTGGATGCTTCAAGAACCCGGTGCAACAAGTTATATGGGTAGCATAGGGAAGGATAAGTATGGGGATGAGATGAAGAAAAACTCAAAACTTGCTGGTGTTAATGTTCACTTTTACGAGGATGAGTCTGCACCAACAGGAACTTGTGCTGTTTGTATCGTGGGTGATGGGAGGTCACTTGTTGCCAATTTGTCTGCTGCTAACTGCTACAAATTTGAGCATTTGAAAAGACCAGAAAATTGGGCATTGGTTGAGAAGGCCAAGTACTTGTACATTGCTGGTTTTTTCCTAACTGTATCGCCAGAATCCATACAGCTTGTTGCTGAACATGCAGCCAGTAATAACAAGATTTTCGGGATGAACCTTTCTGCTACGTTTATCTGCGAGTTTTTCAAGGATGTTCAGGAGAAAGCTTTGCAGTATGTGGACTATGTTTTTGGAAATGAGACAGAAGCAAGAACATTCTCACAAGTTCATGGCTGGGAGATTGATGATGTTGAAGAAATAGCTCTAAAGATCTCCCAGTGGCCGAAAGCATCAGGAGCCCACAAGAGGATTACTGTCATTACTCAGGGAGCAGATCCTGTAGTCGTCGCTGAGGAAGGGAAAGTGAAGAAGTTCCCAGTGGTATTGTTGCCCAAAGAAAAGATTGTTGATACTATTGGAGCAGGGGATGCGTTTGTTGGTGGCTTTCTATCGCAGTTAGTTCAAGAGAAACCTACTGAAGAGTGCGTGAGAGCCGGTTGTTATGCTGCAAGTGTGATCATCCAGAGGTCTGGCTGCACCTACCCAGAGAAGCCTGATTTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0030054 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046683 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0080094 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 map00230 map01100
Pfam Domains
Protein Families
PfkB

Protein Analysis

342

Amino Acids

37.47

Weight (kDa)

5.09

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 7 - 262 2.8e-64 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 1 cut(s) 425
AcuI CTGAAG 1 cut(s) 957
AfaI GTAC 3 cut(s) 173, 479, 485
AfiI CCNNNNNNNGG 2 cut(s) 166, 765
AgsI TTSAA 6 cut(s) 79, 227, 439, 607, 713, 923
AluBI AGCT 3 cut(s) 529, 626, 722
AluI AGCT 3 cut(s) 529, 626, 722
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 1 cut(s) 797
AoxI GGCC 3 cut(s) 3, 471, 740
ApeKI GCWGC 4 cut(s) 410, 545, 965, 993
ApoI RAATTY 1 cut(s) 425
ArsI GACNNNNNNTTYG 2 cut(s) 632, 664
Asp700I GAANNNNTTC 1 cut(s) 830
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 389
BanII GRGCYC 1 cut(s) 760
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
BbsI GAAGAC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 810
BbvI GCAGC 4 cut(s) 397, 557, 952, 980
BccI CCATC 2 cut(s) 22, 374
BceAI ACGGC 1 cut(s) 41
BclI TGATCA 1 cut(s) 975
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 653
BfmI CTRYAG 1 cut(s) 798
BglII AGATCT 1 cut(s) 729
BisI GCNGC 4 cut(s) 411, 546, 966, 994
BlsI GCNGC 4 cut(s) 412, 547, 967, 995
BmcAI AGTACT 1 cut(s) 479
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 757
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 3 cut(s) 208, 730, 830
BmsI GCATC 3 cut(s) 210, 758, 877
BmuI ACTGGG 3 cut(s) 208, 730, 830
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 765
Bse118I RCCGGY 1 cut(s) 953
Bse1I ACTGG 4 cut(s) 214, 549, 736, 836
Bse3DI GCAATG 1 cut(s) 486
BseGI GGATG 8 cut(s) 33, 225, 286, 340, 576, 616, 892, 978
BseLI CCNNNNNNNGG 2 cut(s) 166, 765
BseMI GCAATG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 797, 801
BseNI ACTGG 4 cut(s) 214, 549, 736, 836
BseXI GCAGC 4 cut(s) 397, 557, 952, 980
BseYI CCCAGC 1 cut(s) 693
BsgI GTGCAG 2 cut(s) 327, 979
BshFI GGCC 3 cut(s) 5, 473, 742
BsiSI CCGG 2 cut(s) 234, 954
BslI CCNNNNNNNGG 2 cut(s) 166, 765
BsmAI GTCTC 1 cut(s) 653
BsnI GGCC 3 cut(s) 5, 473, 742
Bsp1286I GDGCHC 1 cut(s) 760
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 4 cut(s) 88, 729, 793, 975
BspANI GGCC 3 cut(s) 5, 473, 742
BspCNI CTCAG 2 cut(s) 796, 802
BspLI GGNNCC 1 cut(s) 757
BspPI GGATC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 486
BsrFI RCCGGY 1 cut(s) 953
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 4 cut(s) 214, 549, 736, 836
BssAI RCCGGY 1 cut(s) 953
BssMI GATC 4 cut(s) 88, 729, 793, 975
Bst4CI ACNGT 2 cut(s) 508, 775
Bst6I CTCTTC 1 cut(s) 933
BstAPI GCANNNNNTGC 2 cut(s) 113, 887
BstAUI TGTACA 1 cut(s) 483
BstDEI CTNAG 2 cut(s) 783, 810
BstEII GGTNACC 1 cut(s) 32
BstF5I GGATG 8 cut(s) 33, 225, 286, 340, 576, 616, 892, 978
BstKTI GATC 4 cut(s) 91, 732, 796, 978
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 4 cut(s) 88, 729, 793, 975
BstMWI GCNNNNNNNGC 5 cut(s) 113, 185, 542, 755, 887
BstNSI RCATGY 1 cut(s) 545
BstPI GGTNACC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 397, 557, 952, 980
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 729, 793
BstXI CCANNNNNNTGG 2 cut(s) 453, 989
BstYI RGATCY 2 cut(s) 729, 793
BsuRI GGCC 3 cut(s) 5, 473, 742
BtsCI GGATG 8 cut(s) 33, 225, 286, 340, 576, 616, 892, 978
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 5 cut(s) 174, 221, 743, 843, 1021
CaiI CAGNNNCTG 1 cut(s) 797
Cfr10I RCCGGY 1 cut(s) 953
Csp6I GTAC 3 cut(s) 172, 478, 484
CviAII CATG 2 cut(s) 542, 689
CviQI GTAC 3 cut(s) 172, 478, 484
DdeI CTNAG 2 cut(s) 783, 810
DpnI GATC 4 cut(s) 90, 731, 795, 977
DpnII GATC 4 cut(s) 88, 729, 793, 975
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 933
EarI CTCTTC 1 cut(s) 933
Eco24I GRGCYC 1 cut(s) 760
Eco57I CTGAAG 1 cut(s) 957
Eco91I GGTNACC 1 cut(s) 32
EcoO65I GGTNACC 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 760
FaeI CATG 2 cut(s) 545, 692
FatI CATG 2 cut(s) 541, 688
FbaI TGATCA 1 cut(s) 975
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 4 cut(s) 411, 546, 966, 994
FokI GGATG 8 cut(s) 40, 232, 293, 347, 583, 623, 899, 965
FriOI GRGCYC 1 cut(s) 760
Fsp4HI GCNGC 4 cut(s) 411, 546, 966, 994
GluI GCNGC 4 cut(s) 411, 546, 966, 994
GsaI CCCAGC 1 cut(s) 697
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 5, 473, 742
HapII CCGG 2 cut(s) 234, 954
Hin1II CATG 2 cut(s) 545, 692
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 3 cut(s) 15, 338, 518
HpaII CCGG 2 cut(s) 234, 954
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 4 cut(s) 64, 174, 322, 640
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 7 cut(s) 76, 227, 568, 617, 753, 923, 982
Hpy8I GTNNAC 4 cut(s) 64, 174, 322, 640
Hpy99I CGWCG 2 cut(s) 68, 809
HpyAV CCTTC 4 cut(s) 5, 259, 463, 809
HpyCH4III ACNGT 2 cut(s) 508, 775
HpyCH4IV ACGT 2 cut(s) 165, 587
HpyCH4V TGCA 8 cut(s) 107, 116, 239, 344, 545, 631, 968, 996
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 185, 542, 755, 887
HpyF3I CTNAG 2 cut(s) 783, 810
HpySE526I ACGT 2 cut(s) 165, 587
Hsp92II CATG 2 cut(s) 545, 692
Ksp22I TGATCA 1 cut(s) 975
Kzo9I GATC 4 cut(s) 88, 729, 793, 975
LmnI GCTCC 3 cut(s) 755, 788, 878
Lsp1109I GCAGC 4 cut(s) 397, 557, 952, 980
LweI GCATC 3 cut(s) 210, 758, 877
MaeII ACGT 2 cut(s) 165, 587
MaeIII GTNAC 2 cut(s) 32, 387
MalI GATC 4 cut(s) 90, 731, 795, 977
MboI GATC 4 cut(s) 88, 729, 793, 975
MboII GAAGA 5 cut(s) 80, 301, 725, 838, 950
MflI RGATCY 2 cut(s) 729, 793
MhlI GDGCHC 1 cut(s) 760
MluCI AATT 4 cut(s) 108, 400, 425, 451
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 2 cut(s) 118, 180
MroXI GAANNNNTTC 1 cut(s) 830
MseI TTAA 1 cut(s) 315
MspI CCGG 2 cut(s) 234, 954
MspR9I CCNGG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 113, 185, 542, 755, 887
NciI CCSGG 1 cut(s) 234
NdeII GATC 4 cut(s) 88, 729, 793, 975
NlaIII CATG 2 cut(s) 545, 692
NlaIV GGNNCC 1 cut(s) 757
NmuCI GTSAC 1 cut(s) 387
NspI RCATGY 1 cut(s) 545
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 2 cut(s) 15, 518
PkrI GCNGC 4 cut(s) 412, 547, 967, 995
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspEI GGTNACC 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 693
PspN4I GGNNCC 1 cut(s) 757
PstNI CAGNNNCTG 1 cut(s) 797
PsuI RGATCY 2 cut(s) 729, 793
RsaI GTAC 3 cut(s) 173, 479, 485
RsaNI GTAC 3 cut(s) 172, 478, 484
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 4 cut(s) 411, 546, 966, 994
Sau3AI GATC 4 cut(s) 88, 729, 793, 975
ScaI AGTACT 1 cut(s) 479
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 760
SfaNI GCATC 3 cut(s) 210, 758, 877
SfcI CTRYAG 1 cut(s) 798
Sse9I AATT 4 cut(s) 108, 400, 425, 451
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 508, 775
TaiI ACGT 2 cut(s) 168, 590
TaqI TCGA 2 cut(s) 63, 205
TasI AATT 4 cut(s) 108, 400, 425, 451
TatI WGTACW 3 cut(s) 171, 477, 483
TfiI GAWTC 2 cut(s) 15, 518
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 4 cut(s) 181, 221, 743, 843
TseFI GTSAC 1 cut(s) 387
TseI GCWGC 4 cut(s) 410, 545, 965, 993
Tsp45I GTSAC 1 cut(s) 387
TspDTI ATGAA 3 cut(s) 302, 587, 677
TspRI CASTG 4 cut(s) 181, 221, 743, 843
XapI RAATTY 1 cut(s) 425
XceI RCATGY 1 cut(s) 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 830
ZrmI AGTACT 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.