Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002092

Physical Location & Seq

Genomic Coordinates Forward (+)

7940709 .. 7941077

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAATCTTTCCGCTCCTTTCATTTGTGAGTTCTTCAAGGATGTACAGGAGAAAGCACTTCCGTACATGGACTATGTTTTTGGGAATGAGACTGAAGCAAGAACCTTTTCAAGGGTTCATGGCTGGAAGACTGAGAATGTCGAGGAGATCGCCATAAAGATTTCCCAGTTGCCCAAAGCATCAGGTACGCACAAGAGGATTACTGTGATCACACAAGGTGCAGATCCTGTTGTAGTTGCTGAGGATGGGAAGGTGAAACTATTTCCTGTCATATTGTTACCTAAGGAGAAGCTGGTTGATACCAATGGAGCCGGAGATGCATTTGTTGGGGGATTTTTTGTCACAGCTGGTTCAAGAGAAGCCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

123

Amino Acids

13.41

Weight (kDa)

5.9

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	1 - 113	7.6e-22	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09820 AT3G09820 AT5G03300 AT5G03300 AT5G03300
fragaria_vesca	FvH4_6g16080 FvH4_6g16090 FvH4_6g16090 FvH4_7g19110
malus_domestica	MD01G1106200.v1.1 MD07G1172600.v1.1 MD12G1116000.v1.1
prunus_persica	Prupe.2G211700_v2.0.a1 Prupe.6G235100_v2.0.a1
pyrus_communis	pycom01g13290 pycom04g09090 pycom07g16710 pycom12g11550 pycom14g07710
rosa_chinensis	RchiOBHm_Chr1g0363001 RchiOBHm_Chr3g0469911 RchiOBHm_Chr3g0469921
rosa_laevigata	RLG00000024312 RLG00000024313 RLG00000027603
rosa_multiflora	Rmu_co8309403.1_g000001 Rmu_sc0000174.1_g000004 Rmu_sc0008730.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293560 Rroxscaffold_6G00411370
rosa_rugosa	Rorug01G0303400 Rorug03G0105500 Rorug03G0105600
rosa_samantha	Rh1AG312400 Rh1CG292600 Rh1DG306400 Rh3AG154400 Rh3BG178500 Rh3CG169100 Rh3DG196600 Rh3DG196700
rosa_wichuraiana	Rw1G027690 Rw3G014540 Rw3G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	14
AciI	CCGC	1 cut(s)	12
AclWI	GGATC	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	114
AdeI	CACNNNGTG	1 cut(s)	218
AfaI	GTAC	3 cut(s)	45, 65, 187
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	3 cut(s)	37, 111, 354
AluBI	AGCT	2 cut(s)	292, 347
AluI	AGCT	2 cut(s)	292, 347
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	1 cut(s)	218
AlwNI	CAGNNNCTG	1 cut(s)	227
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
Asp700I	GAANNNNTTC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	265
AxyI	CCTNAGG	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	134
BbvCI	CCTCAGC	1 cut(s)	240
BccI	CCATC	1 cut(s)	239
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	188, 307
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	282
BseGI	GGATG	2 cut(s)	46, 250
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	123, 231
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	3 cut(s)	147, 207, 223
BspACI	CCGC	1 cut(s)	12
BspCNI	CTCAG	2 cut(s)	124, 232
BspLI	GGNNCC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	147, 207, 223
Bst4CI	ACNGT	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	43
BstDEI	CTNAG	3 cut(s)	132, 240, 282
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	46, 250
BstKTI	GATC	3 cut(s)	150, 210, 226
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	3 cut(s)	147, 207, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	46, 250
CaiI	CAGNNNCTG	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	44, 64, 186
CviAII	CATG	2 cut(s)	67, 119
CviJI	RGCY	5 cut(s)	123, 292, 311, 347, 362
CviKI_1	RGCY	5 cut(s)	123, 292, 311, 347, 362
CviQI	GTAC	3 cut(s)	44, 64, 186
DdeI	CTNAG	3 cut(s)	132, 240, 282
DpnI	GATC	3 cut(s)	149, 209, 225
DpnII	GATC	3 cut(s)	147, 207, 223
DraIII	CACNNNGTG	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	114
Eco81I	CCTNAGG	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	322
FaeI	CATG	2 cut(s)	70, 122
FaiI	YATR	5 cut(s)	68, 75, 120, 155, 272
FatI	CATG	2 cut(s)	66, 118
FbaI	TGATCA	1 cut(s)	207
FokI	GGATG	2 cut(s)	53, 257
HapII	CCGG	1 cut(s)	312
Hin1II	CATG	2 cut(s)	70, 122
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	265
Hpy188III	TCNNGA	1 cut(s)	354
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	221, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	3 cut(s)	132, 240, 282
Hsp92II	CATG	2 cut(s)	70, 122
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	147, 207, 223
LmnI	GCTCC	2 cut(s)	19, 308
LpnPI	CCDG	9 cut(s)	32, 109, 168, 179, 240, 278, 279, 325, 333
LweI	GCATC	2 cut(s)	188, 307
MaeIII	GTNAC	2 cut(s)	276, 340
MalI	GATC	3 cut(s)	149, 209, 225
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	3 cut(s)	147, 207, 223
MboII	GAAGA	2 cut(s)	25, 139
MflI	RGATCY	1 cut(s)	223
MnlI	CCTC	3 cut(s)	136, 189, 235
Mph1103I	ATGCAT	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	106
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	1 cut(s)	317
NdeII	GATC	3 cut(s)	147, 207, 223
NlaIII	CATG	2 cut(s)	70, 122
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	340
NsiI	ATGCAT	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	310
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	3 cut(s)	45, 65, 187
RsaNI	GTAC	3 cut(s)	44, 64, 186
Sau3AI	GATC	3 cut(s)	147, 207, 223
SetI	ASST	7 cut(s)	107, 187, 220, 255, 283, 294, 349
SfaNI	GCATC	2 cut(s)	188, 307
SsiI	CCGC	1 cut(s)	12
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	141
TatI	WGTACW	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	4
TseFI	GTSAC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	3 cut(s)	10, 17, 107
TspGWI	ACGGA	1 cut(s)	51
XagI	CCTNNNNNAGG	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	106
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.