Rroxscaffold_6G00411370

adenosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0002092
Physical Location & Seq
Reverse (-)
33863570 .. 33866497
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411370.1

Sequence Viewer

Length: 1023 bp
ATGGCGTCCGAAGGAGTTCTGCTGGGGATGGGCAACCCACTCCTCGACATCTCCGCCATCGTCGACCAAGACTTCTTGAATAAATATGATCTCCAGCTCAACAATGCGATTCTCGCAGAGGACAAGCACCTTCCCATGTATGAGGAACTTGCTTCTAACCCTAACGTGGAGTACATTGCTGGAGGTGCTACTCAAAACTCCATTCGAGTTGCCCAGTGGATGCTTCAAGTACCCGGGGCAACAAGTTATATGGGCAGCATAGGAAAGGATAAGTATGGGGAAGAGATGAAGAAGAACTCAAAGCTTGCTGGTGTTAATGTCCACTATTACGAGGATGAGTCTGCACCAACAGGTACTTGTGGTGTTTGTGTAGTGGGTGGTGAAAGGTCGCTTATTGCCAATTTGGCAGCTGCTAACTGCTACAAAGTTGAGCATTTGAAAAGACCAGAAAACTGGGCATTGGTTGAGAAGGCCAAGTACTTCTATATTGCTGGTTTTTTCTTAACTGTATCTCCAGAATCCATTCAGATGGTTGCTGAACATGCAGCTGCAAATAACAAGGTTTTCAGCATGAACCTTTCTGCCCCCTTTATCTGTGAGTTTTTCAAGGATGTCCAGGAGAAAGCTTTGCCGTATATGGATTATGTTTTTGGAAATGAGACAGAAGCAAGAACGTTCTCAAAAGTTCACGGCTGGGAGACTGATGATGTTGAGCAAATAGCTCTTAAGATCTCTGAGTGGCCGAAAGTAGGAGCACGCAAGAGGATTACTGTTATTACTCAGGGGGCAGATCCTGTGGTTGTTGCTGAGGATGGGAAAGTGAAGAAGTTCCCAGTGATACTGTTGCCAAAAGAAAAGCTTGTTGATACCAATGGAGCAGGGGATGCATTTGTTGGAGGTTTTCTATCTCAGTTAGTTCAAGAGAAACCCATTGAAGATTGCGTGAAAGCTGGTTGTTATGCTGCAAATGTGATCATCCAGAGGTCTGGCTGCACCTACCCAGAGAAGCCTGACTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0030054 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046683 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0080094 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 map00230 map01100
Pfam Domains
Protein Families
PfkB

Protein Analysis

340

Amino Acids

37.36

Weight (kDa)

5.08

Isoelectric Point (pI)

35.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 28 - 334 5.7e-73 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 63
AciI CCGC 1 cut(s) 54
AclI AACGTT 1 cut(s) 674
AclWI GGATC 1 cut(s) 785
AcoI YGGCCR 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 173, 231, 355, 479
AfiI CCNNNNNNNGG 2 cut(s) 166, 749
AflII CTTAAG 1 cut(s) 725
AgsI TTSAA 6 cut(s) 79, 227, 439, 607, 920, 935
AjnI CCWGG 1 cut(s) 615
AluBI AGCT 8 cut(s) 97, 304, 410, 548, 626, 722, 859, 950
AluI AGCT 8 cut(s) 97, 304, 410, 548, 626, 722, 859, 950
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 2 cut(s) 653, 692
AlwI GGATC 1 cut(s) 785
AlwNI CAGNNNCTG 1 cut(s) 794
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 471, 740
ApeKI GCWGC 7 cut(s) 255, 407, 410, 545, 548, 962, 990
Asp700I GAANNNNTTC 3 cut(s) 15, 522, 827
AsuC2I CCSGG 2 cut(s) 234, 235
AsuHPI GGTGA 1 cut(s) 392
AvaI CYCGRG 1 cut(s) 233
BarI GAAGNNNNNNTAC 2 cut(s) 461, 493
Bbv12I GWGCWC 1 cut(s) 757
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 7 cut(s) 267, 397, 419, 535, 557, 949, 977
BccI CCATC 4 cut(s) 22, 65, 523, 806
BceAI ACGGC 2 cut(s) 616, 706
BciT130I CCWGG 1 cut(s) 617
BclI TGATCA 1 cut(s) 972
BcnI CCSGG 2 cut(s) 234, 235
BcoDI GTCTC 2 cut(s) 653, 692
BfrI CTTAAG 1 cut(s) 725
BglI GCCNNNNNGGC 1 cut(s) 404
BglII AGATCT 1 cut(s) 729
BisI GCNGC 7 cut(s) 256, 408, 411, 546, 549, 963, 991
BlsI GCNGC 7 cut(s) 257, 409, 412, 547, 550, 964, 992
BmcAI AGTACT 1 cut(s) 479
Bme1390I CCNGG 3 cut(s) 234, 235, 617
BmeT110I CYCGRG 1 cut(s) 233
BmrFI CCNGG 3 cut(s) 234, 235, 617
BmrI ACTGGG 3 cut(s) 208, 463, 827
BmsI GCATC 2 cut(s) 210, 874
BmuI ACTGGG 3 cut(s) 208, 463, 827
BpmI CTGGAG 3 cut(s) 77, 201, 498
Bpu10I CCTNAGC 1 cut(s) 807
BpuMI CCSGG 2 cut(s) 234, 235
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 233, 234
BsaXI ACNNNNNCTCC 2 cut(s) 496, 526
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 749
Bse1I ACTGG 3 cut(s) 214, 458, 833
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 233, 234
BseGI GGATG 7 cut(s) 33, 225, 340, 616, 817, 889, 975
BseLI CCNNNNNNNGG 2 cut(s) 166, 749
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 4 cut(s) 726, 794, 798, 923
BseNI ACTGG 3 cut(s) 214, 458, 833
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 7 cut(s) 267, 397, 419, 535, 557, 949, 977
BseYI CCCAGC 2 cut(s) 22, 693
BsgI GTGCAG 2 cut(s) 327, 976
BshFI GGCC 2 cut(s) 473, 742
BsiHKAI GWGCWC 1 cut(s) 757
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 234
BslI CCNNNNNNNGG 2 cut(s) 166, 749
BsmAI GTCTC 2 cut(s) 653, 692
BsnI GGCC 2 cut(s) 473, 742
BsoBI CYCGRG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 4 cut(s) 88, 729, 790, 972
BspACI CCGC 1 cut(s) 54
BspANI GGCC 2 cut(s) 473, 742
BspCNI CTCAG 4 cut(s) 727, 793, 799, 922
BspPI GGATC 1 cut(s) 785
BspTI CTTAAG 1 cut(s) 725
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 3 cut(s) 214, 458, 833
BssECI CCNNGG 2 cut(s) 233, 234
BssMI GATC 4 cut(s) 88, 729, 790, 972
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 3 cut(s) 508, 772, 843
Bst6I CTCTTC 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 725
BstAPI GCANNNNNTGC 1 cut(s) 884
BstC8I GCNNGC 2 cut(s) 306, 757
BstDEI CTNAG 4 cut(s) 735, 780, 807, 909
BstF5I GGATG 7 cut(s) 33, 225, 340, 616, 817, 889, 975
BstKTI GATC 4 cut(s) 91, 732, 793, 975
BstMAI GTCTC 2 cut(s) 653, 692
BstMBI GATC 4 cut(s) 88, 729, 790, 972
BstMWI GCNNNNNNNGC 5 cut(s) 113, 185, 404, 542, 884
BstNI CCWGG 1 cut(s) 617
BstNSI RCATGY 1 cut(s) 545
BstSCI CCNGG 3 cut(s) 232, 233, 615
BstV1I GCAGC 7 cut(s) 267, 397, 419, 535, 557, 949, 977
BstX2I RGATCY 2 cut(s) 729, 790
BstXI CCANNNNNNTGG 3 cut(s) 453, 529, 986
BstYI RGATCY 2 cut(s) 729, 790
BsuRI GGCC 2 cut(s) 473, 742
BtsCI GGATG 7 cut(s) 33, 225, 340, 616, 817, 889, 975
BtsIMutI CAGTG 2 cut(s) 221, 840
Cac8I GCNNGC 2 cut(s) 306, 757
CaiI CAGNNNCTG 1 cut(s) 794
Cfr9I CCCGGG 1 cut(s) 233
Csp6I GTAC 4 cut(s) 172, 230, 354, 478
CviAII CATG 3 cut(s) 136, 542, 571
CviQI GTAC 4 cut(s) 172, 230, 354, 478
DdeI CTNAG 4 cut(s) 735, 780, 807, 909
DpnI GATC 4 cut(s) 90, 731, 792, 974
DpnII GATC 4 cut(s) 88, 729, 790, 972
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EciI GGCGGA 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 615
EcoT22I ATGCAT 1 cut(s) 889
FaeI CATG 3 cut(s) 139, 545, 574
FalI AAGNNNNNCTT 3 cut(s) 843, 875, 998
FatI CATG 3 cut(s) 135, 541, 570
FbaI TGATCA 1 cut(s) 972
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 7 cut(s) 256, 408, 411, 546, 549, 963, 991
FokI GGATG 7 cut(s) 40, 232, 347, 623, 824, 896, 962
Fsp4HI GCNGC 7 cut(s) 256, 408, 411, 546, 549, 963, 991
GluI GCNGC 7 cut(s) 256, 408, 411, 546, 549, 963, 991
GsaI CCCAGC 2 cut(s) 26, 697
GsuI CTGGAG 3 cut(s) 77, 201, 498
HaeIII GGCC 2 cut(s) 473, 742
HapII CCGG 1 cut(s) 234
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 139, 545, 574
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 3 cut(s) 302, 624, 857
HinfI GANTC 3 cut(s) 109, 338, 518
HpaII CCGG 1 cut(s) 234
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 3 cut(s) 64, 322, 688
Hpy188I TCNGA 3 cut(s) 10, 528, 736
Hpy188III TCNNGA 4 cut(s) 76, 515, 920, 979
Hpy8I GTNNAC 3 cut(s) 64, 322, 688
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 5, 140, 463
HpyCH4III ACNGT 3 cut(s) 508, 772, 843
HpyCH4IV ACGT 2 cut(s) 165, 674
HpyCH4V TGCA 6 cut(s) 344, 545, 551, 887, 965, 993
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 185, 404, 542, 884
HpyF3I CTNAG 4 cut(s) 735, 780, 807, 909
HpySE526I ACGT 2 cut(s) 165, 674
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 139, 545, 574
Ksp22I TGATCA 1 cut(s) 972
Kzo9I GATC 4 cut(s) 88, 729, 790, 972
LmnI GCTCC 2 cut(s) 752, 875
Lsp1109I GCAGC 7 cut(s) 267, 397, 419, 535, 557, 949, 977
LweI GCATC 2 cut(s) 210, 874
MaeII ACGT 2 cut(s) 165, 674
MalI GATC 4 cut(s) 90, 731, 792, 974
MboI GATC 4 cut(s) 88, 729, 790, 972
MboII GAAGA 5 cut(s) 293, 301, 304, 835, 947
MflI RGATCY 2 cut(s) 729, 790
MhlI GDGCHC 1 cut(s) 757
MluCI AATT 1 cut(s) 400
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 1 cut(s) 874
MnlI CCTC 9 cut(s) 53, 112, 136, 176, 325, 756, 802, 890, 975
Mph1103I ATGCAT 1 cut(s) 889
MroXI GAANNNNTTC 3 cut(s) 15, 522, 827
MseI TTAA 4 cut(s) 315, 503, 726, 1017
MslI CAYNNNNRTG 1 cut(s) 527
MspA1I CMGCKG 2 cut(s) 410, 548
MspCI CTTAAG 1 cut(s) 725
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 3 cut(s) 234, 235, 617
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 5 cut(s) 113, 185, 404, 542, 884
NciI CCSGG 2 cut(s) 234, 235
NdeII GATC 4 cut(s) 88, 729, 790, 972
NlaIII CATG 3 cut(s) 139, 545, 574
NsiI ATGCAT 1 cut(s) 889
NspI RCATGY 1 cut(s) 545
PdmI GAANNNNTTC 3 cut(s) 15, 522, 827
PfeI GAWTC 2 cut(s) 109, 518
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 7 cut(s) 257, 409, 412, 547, 550, 964, 992
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 674
Psp6I CCWGG 1 cut(s) 615
PspFI CCCAGC 2 cut(s) 22, 693
PspGI CCWGG 1 cut(s) 615
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 2 cut(s) 729, 790
PvuII CAGCTG 2 cut(s) 410, 548
RsaI GTAC 4 cut(s) 173, 231, 355, 479
RsaNI GTAC 4 cut(s) 172, 230, 354, 478
RseI CAYNNNNRTG 1 cut(s) 527
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 4 cut(s) 315, 503, 726, 1017
SatI GCNGC 7 cut(s) 256, 408, 411, 546, 549, 963, 991
Sau3AI GATC 4 cut(s) 88, 729, 790, 972
ScaI AGTACT 1 cut(s) 479
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 3 cut(s) 234, 235, 617
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 2 cut(s) 210, 874
SmaI CCCGGG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
Sse9I AATT 1 cut(s) 400
SsiI CCGC 1 cut(s) 54
StyD4I CCNGG 3 cut(s) 232, 233, 615
TaaI ACNGT 3 cut(s) 508, 772, 843
TaiI ACGT 2 cut(s) 168, 677
TaqI TCGA 3 cut(s) 45, 63, 205
TasI AATT 1 cut(s) 400
TatI WGTACW 2 cut(s) 171, 477
TfiI GAWTC 2 cut(s) 109, 518
Tru1I TTAA 4 cut(s) 315, 503, 726, 1017
Tru9I TTAA 4 cut(s) 315, 503, 726, 1017
TscAI CASTG 2 cut(s) 221, 840
TseI GCWGC 7 cut(s) 255, 407, 410, 545, 548, 962, 990
TspDTI ATGAA 2 cut(s) 302, 587
TspMI CCCGGG 1 cut(s) 233
TspRI CASTG 2 cut(s) 221, 840
Vha464I CTTAAG 1 cut(s) 725
XceI RCATGY 1 cut(s) 545
XmaI CCCGGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 63
XmnI GAANNNNTTC 3 cut(s) 15, 522, 827
ZrmI AGTACT 1 cut(s) 479
Zsp2I ATGCAT 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.