RchiOBHm_Chr3g0469921

adenosine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002092
Physical Location & Seq
Forward (+)
15906216 .. 15909011
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43575

Sequence Viewer

Length: 1023 bp
ATGGCCTCCGAAGGAATCCTGTTGGGGATGGGCAACCCCCTTCTTGACATCTCCGCCATTGTCGATGAAGACTTCTTGAAAAAATATGATCTCCAACTCAACAATGCGATTCTTGCAGAGGACAAGCACCTACCCATATATGAGGAACTTTCTTCCAACCCTAACGTGGAGTACATTGCTGGAGGTGCTACTAACAAGTCCATTCGAGTTGCCCAGTGGATGCTTCAAGTACCCGGTGCAACAAGTTATATGGGTAGCATAGGGAAGGACAAGTATGGGGATGAAATGAAGAGGAACTCAAAACTAGCTCGTGTTAATGTTCACTTTTATGAGGATGAGTCTGCACCAACAGGAACTTGTGCTATTTGTATTGTGGGTGATGAAAGAAGTGTCACTTGTTGCCAATTTGTCAGCTGCTACAAATTTGAGCATTTGAAAAGACCAGAAAATTGGGCATTAGTTGAGAAGGCCAAATACTTGTATATTGCTGGTTTTTTCGTAACTGTATCGCCAGAATCCATACAGCTTGTTGCTGAACATGCAGCCAATAATAACAAGATTTTCGGCATGAACCTTTCTGCTACATTTATCTGTGAGTTTTTCAAGGATGCTCAGGAGAAAGCTTTGCCGTATGTGGACTATGTTTTTGGAAATGAGACAGAAGCAAGAACATTCTCAAAAGTTCACGGCTGGGAGACTGATGATGTTGAAGAAATAGCTCTAAAGATCTCCCAGTGGCCAAAAGCATCAGGAGCACACAAGAGGATTACTGTCATAACTCAAGGTGCAGATCCTGTAGTCGTCGCTGAGGATGGGAAAGTGAAGAAGTTCCCAGTGATATTGTTGCCCAAAGAAAAGATTGTTGATACCATTGGAGCAGGGGATGCGTTTGTTGGTGGCTTTCTATCACAGTTAGTTCAAGAGAAACCCACTGAAGAGTGCGTGAGAGCCGGTTGTTATGCTGCAAGTGTGATCATCCAAAGGTCTGGCTGCACCTACCCAGAGAAGCCCGATTTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0030054 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046683 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0080094 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 map00230 map01100
Pfam Domains
Protein Families
PfkB

Protein Analysis

340

Amino Acids

37.59

Weight (kDa)

5.17

Isoelectric Point (pI)

35.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PfkB PF00294 28 - 334 7.6e-67 pfkB family carbohydrate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 54
AclWI GGATC 1 cut(s) 785
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 954
AfaI GTAC 2 cut(s) 173, 231
AfiI CCNNNNNNNGG 1 cut(s) 166
AgsI TTSAA 6 cut(s) 79, 227, 436, 604, 710, 920
AluBI AGCT 5 cut(s) 308, 414, 526, 623, 719
AluI AGCT 5 cut(s) 308, 414, 526, 623, 719
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 2 cut(s) 650, 689
AlwI GGATC 1 cut(s) 785
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 3 cut(s) 3, 468, 737
ApeKI GCWGC 4 cut(s) 414, 542, 962, 990
ApoI RAATTY 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
Asp700I GAANNNNTTC 1 cut(s) 827
AsuC2I CCSGG 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 389
BalI TGGCCA 1 cut(s) 739
BarI GAAGNNNNNNTAC 2 cut(s) 458, 490
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 757
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 4 cut(s) 401, 554, 949, 977
BccI CCATC 2 cut(s) 22, 806
BceAI ACGGC 2 cut(s) 613, 703
BclI TGATCA 1 cut(s) 972
BcnI CCSGG 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 650, 689
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 1 cut(s) 795
BglII AGATCT 1 cut(s) 726
BisI GCNGC 4 cut(s) 415, 543, 963, 991
BlsI GCNGC 4 cut(s) 416, 544, 964, 992
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BmrI ACTGGG 3 cut(s) 208, 727, 827
BmsI GCATC 4 cut(s) 210, 598, 755, 874
BmuI ACTGGG 3 cut(s) 208, 727, 827
BpiI GAAGAC 1 cut(s) 75
BpmI CTGGAG 1 cut(s) 201
Bpu10I CCTNAGC 2 cut(s) 612, 807
BpuEI CTTGAG 1 cut(s) 765
BpuMI CCSGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse118I RCCGGY 1 cut(s) 950
Bse1I ACTGG 3 cut(s) 214, 733, 833
Bse3DI GCAATG 1 cut(s) 174
BseGI GGATG 8 cut(s) 33, 225, 286, 340, 613, 817, 889, 975
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 626, 798
BseNI ACTGG 3 cut(s) 214, 733, 833
BseXI GCAGC 4 cut(s) 401, 554, 949, 977
BseYI CCCAGC 1 cut(s) 690
BsgI GTGCAG 3 cut(s) 327, 807, 976
BshFI GGCC 3 cut(s) 5, 470, 739
BsiHKAI GWGCWC 1 cut(s) 757
BsiSI CCGG 2 cut(s) 234, 951
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 650, 689
BsnI GGCC 3 cut(s) 5, 470, 739
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 4 cut(s) 88, 726, 790, 972
BspACI CCGC 1 cut(s) 54
BspANI GGCC 3 cut(s) 5, 470, 739
BspCNI CTCAG 2 cut(s) 625, 799
BspPI GGATC 1 cut(s) 785
BsrDI GCAATG 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 950
BsrI ACTGG 3 cut(s) 214, 733, 833
BssAI RCCGGY 1 cut(s) 950
BssMI GATC 4 cut(s) 88, 726, 790, 972
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst4CI ACNGT 3 cut(s) 505, 772, 912
Bst6I CTCTTC 2 cut(s) 284, 930
BstAPI GCANNNNNTGC 1 cut(s) 884
BstDEI CTNAG 2 cut(s) 612, 807
BstF5I GGATG 8 cut(s) 33, 225, 286, 340, 613, 817, 889, 975
BstKTI GATC 4 cut(s) 91, 729, 793, 975
BstMAI GTCTC 2 cut(s) 650, 689
BstMBI GATC 4 cut(s) 88, 726, 790, 972
BstMWI GCNNNNNNNGC 5 cut(s) 113, 185, 539, 752, 884
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 795
BstV1I GCAGC 4 cut(s) 401, 554, 949, 977
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 2 cut(s) 726, 790
BstXI CCANNNNNNTGG 2 cut(s) 450, 986
BstYI RGATCY 2 cut(s) 726, 790
BsuRI GGCC 3 cut(s) 5, 470, 739
BtsCI GGATG 8 cut(s) 33, 225, 286, 340, 613, 817, 889, 975
BtsIMutI CAGTG 4 cut(s) 221, 740, 840, 930
CaiI CAGNNNCTG 1 cut(s) 794
Cfr10I RCCGGY 1 cut(s) 950
Csp6I GTAC 2 cut(s) 172, 230
CviAII CATG 2 cut(s) 539, 568
CviQI GTAC 2 cut(s) 172, 230
DdeI CTNAG 2 cut(s) 612, 807
DpnI GATC 4 cut(s) 90, 728, 792, 974
DpnII GATC 4 cut(s) 88, 726, 790, 972
EaeI YGGCCR 1 cut(s) 737
Eam1104I CTCTTC 2 cut(s) 284, 930
EarI CTCTTC 2 cut(s) 284, 930
EciI GGCGGA 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 954
FaeI CATG 2 cut(s) 542, 571
FalI AAGNNNNNCTT 2 cut(s) 379, 411
FatI CATG 2 cut(s) 538, 567
FbaI TGATCA 1 cut(s) 972
Fnu4HI GCNGC 4 cut(s) 415, 543, 963, 991
FokI GGATG 8 cut(s) 40, 232, 293, 347, 620, 824, 896, 962
Fsp4HI GCNGC 4 cut(s) 415, 543, 963, 991
FspBI CTAG 1 cut(s) 305
GluI GCNGC 4 cut(s) 415, 543, 963, 991
GsaI CCCAGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 5, 470, 739
HapII CCGG 2 cut(s) 234, 951
Hin1II CATG 2 cut(s) 542, 571
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 4 cut(s) 15, 109, 338, 515
HpaII CCGG 2 cut(s) 234, 951
HphI GGTGA 1 cut(s) 389
Hpy166II GTNNAC 3 cut(s) 322, 637, 685
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 5 cut(s) 44, 76, 614, 750, 920
Hpy8I GTNNAC 3 cut(s) 322, 637, 685
Hpy99I CGWCG 1 cut(s) 806
HpyAV CCTTC 4 cut(s) 5, 50, 259, 460
HpyCH4III ACNGT 3 cut(s) 505, 772, 912
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 7 cut(s) 116, 239, 344, 542, 788, 965, 993
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 185, 539, 752, 884
HpyF3I CTNAG 2 cut(s) 612, 807
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 542, 571
Ksp22I TGATCA 1 cut(s) 972
Kzo9I GATC 4 cut(s) 88, 726, 790, 972
LmnI GCTCC 2 cut(s) 752, 875
Lsp1109I GCAGC 4 cut(s) 401, 554, 949, 977
LweI GCATC 4 cut(s) 210, 598, 755, 874
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 391, 499
MalI GATC 4 cut(s) 90, 728, 792, 974
MboI GATC 4 cut(s) 88, 726, 790, 972
MboII GAAGA 6 cut(s) 80, 144, 301, 722, 835, 947
MflI RGATCY 2 cut(s) 726, 790
MhlI GDGCHC 1 cut(s) 757
MlsI TGGCCA 1 cut(s) 739
MluCI AATT 3 cut(s) 404, 422, 448
MluNI TGGCCA 1 cut(s) 739
MlyI GAGTC 1 cut(s) 347
MmeI TCCRAC 2 cut(s) 118, 180
MnlI CCTC 8 cut(s) 16, 112, 136, 176, 285, 325, 756, 802
Mox20I TGGCCA 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 827
MscI TGGCCA 1 cut(s) 739
MseI TTAA 2 cut(s) 315, 1017
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 739
MspA1I CMGCKG 1 cut(s) 414
MspI CCGG 2 cut(s) 234, 951
MspR9I CCNGG 1 cut(s) 234
MwoI GCNNNNNNNGC 5 cut(s) 113, 185, 539, 752, 884
NciI CCSGG 1 cut(s) 234
NdeII GATC 4 cut(s) 88, 726, 790, 972
NlaIII CATG 2 cut(s) 542, 571
NmuCI GTSAC 1 cut(s) 391
NspI RCATGY 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 827
PfeI GAWTC 3 cut(s) 15, 109, 515
PkrI GCNGC 4 cut(s) 416, 544, 964, 992
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 690
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 2 cut(s) 726, 790
PvuII CAGCTG 1 cut(s) 414
RsaI GTAC 2 cut(s) 173, 231
RsaNI GTAC 2 cut(s) 172, 230
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 2 cut(s) 315, 1017
SatI GCNGC 4 cut(s) 415, 543, 963, 991
Sau3AI GATC 4 cut(s) 88, 726, 790, 972
SchI GAGTC 1 cut(s) 347
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 4 cut(s) 210, 598, 755, 874
SfcI CTRYAG 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 780
SmoI CTYRAG 1 cut(s) 780
Sse9I AATT 3 cut(s) 404, 422, 448
SsiI CCGC 1 cut(s) 54
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 505, 772, 912
TaiI ACGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 63, 205
TasI AATT 3 cut(s) 404, 422, 448
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 3 cut(s) 15, 109, 515
Tru1I TTAA 2 cut(s) 315, 1017
Tru9I TTAA 2 cut(s) 315, 1017
TscAI CASTG 4 cut(s) 221, 740, 840, 937
TseFI GTSAC 1 cut(s) 391
TseI GCWGC 4 cut(s) 414, 542, 962, 990
Tsp45I GTSAC 1 cut(s) 391
TspDTI ATGAA 5 cut(s) 81, 297, 302, 396, 584
TspRI CASTG 4 cut(s) 221, 740, 840, 937
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 542
XcmI CCANNNNNNNNNTGG 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 827
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.