Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002092

Physical Location & Seq

Genomic Coordinates Reverse (-)

34367963 .. 34393567

Gene Structure 25605 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCCTCCGAAGGAATCCTGTTGGGGATGGGCAAACCCCTTCTTGACATCTCCGCCATTGTCGATGAAGACTTCTTAAAAAAATATGATCTCCAACTCAACATTGCGATTCTTGCAGTGGACGAGCACCTACCCATATATGAGGAACTTTCTTCCAACCCTCACGTGGAGTACATTGCTGGAGTACCCGGTGCAACAAGTTATATGGGTAGCATAGGGAAAGACAAGTATGGGGATGAAATGAAGAAGAACTCAAAACTAGCTGGTGTTAATGTTCACTTTTACGAGGATGAGTCTGCACCAACAGGAACTTGTGCTATTTGTATCGTGGGTGATGAAAGGTCACTTGTTGCCAATTTGTCAGCTGCTAACTGCTACAAATTTGAGCATTTGAAAAGACCAGAAAATTGGGCATTAGCTGGGTACCTTGACAAGGCCAAATACTTGTATATTGCTGGTTTTTTCCTAACTATTTTCGGCATGAACCTTTCTGCTACATTTATCTGTGAGTTTTTCAAGGATGCTCAGGAGAAAGCTTTGCTAAATAGCTCTAAAGATCTCCCAGTGGCCAAAAGCATCAGGAGCACACAAGACGATTACTGTCATAGTGTCATAACTCAAGGTGCAGATCCTGTAGTCGTCGCTGAGGATGGGAAAGTGAAGAAGTTCCCAGTGATACTGTTGCCCAAAGAGAAGATTGTTGATACCATTGGGCAGTTGGTTCAAGAGAAACCCACTGAAGAGTGCGTGAGAGCCGGTTGTTATGCTGCAAGTGTGATCATCCAAAGGTCTGCTGCACCTACCCAGAGAAGCCTGATTTTAACTGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0030054 GO:0034404 GO:0034641 GO:0034654 GO:0042221 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046683 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0080094 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

278

Amino Acids

30.33

Weight (kDa)

5.14

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	64 - 156	1.6e-16	pfkB family carbohydrate kinase
PfkB	PF00294	202 - 266	1.1e-06	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09820 AT3G09820 AT5G03300 AT5G03300 AT5G03300
fragaria_vesca	FvH4_6g16080 FvH4_6g16090 FvH4_6g16090 FvH4_7g19110
malus_domestica	MD01G1106200.v1.1 MD07G1172600.v1.1 MD12G1116000.v1.1
prunus_persica	Prupe.2G211700_v2.0.a1 Prupe.6G235100_v2.0.a1
pyrus_communis	pycom01g13290 pycom04g09090 pycom07g16710 pycom12g11550 pycom14g07710
rosa_chinensis	RchiOBHm_Chr1g0363001 RchiOBHm_Chr3g0469911 RchiOBHm_Chr3g0469921
rosa_laevigata	RLG00000024312 RLG00000024313 RLG00000027603
rosa_multiflora	Rmu_co8309403.1_g000001 Rmu_sc0000174.1_g000004 Rmu_sc0008730.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293560 Rroxscaffold_6G00411370
rosa_rugosa	Rorug01G0303400 Rorug03G0105500 Rorug03G0105600
rosa_samantha	Rh1AG312400 Rh1CG292600 Rh1DG306400 Rh3AG154400 Rh3BG178500 Rh3CG169100 Rh3DG196600 Rh3DG196700
rosa_wichuraiana	Rw1G027690 Rw3G014540 Rw3G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	423
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	1 cut(s)	759
AcvI	CACGTG	1 cut(s)	166
AfaI	GTAC	3 cut(s)	173, 186, 425
AfiI	CCNNNNNNNGG	2 cut(s)	166, 433
AgsI	TTSAA	3 cut(s)	394, 517, 725
AluBI	AGCT	5 cut(s)	263, 365, 419, 536, 549
AluI	AGCT	5 cut(s)	263, 365, 419, 536, 549
Alw21I	GWGCWC	2 cut(s)	129, 587
AlwI	GGATC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	3, 435, 567
ApeKI	GCWGC	3 cut(s)	365, 767, 794
ApoI	RAATTY	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	665
Asp718I	GGTACC	1 cut(s)	423
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	423
BbrPI	CACGTG	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	2 cut(s)	129, 587
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	352, 754, 781
BccI	CCATC	2 cut(s)	22, 644
BclI	TGATCA	1 cut(s)	777
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	633
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	3 cut(s)	366, 768, 795
BlsI	GCNGC	3 cut(s)	367, 769, 796
Bme1390I	CCNGG	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	425
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	2 cut(s)	557, 665
BmsI	GCATC	2 cut(s)	511, 585
BmuI	ACTGGG	2 cut(s)	557, 665
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	2 cut(s)	525, 645
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 433
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	2 cut(s)	563, 671
Bse3DI	GCAATG	2 cut(s)	102, 174
BseGI	GGATG	6 cut(s)	33, 241, 295, 526, 655, 780
BseLI	CCNNNNNNNGG	2 cut(s)	166, 433
BseMI	GCAATG	2 cut(s)	102, 174
BseMII	CTCAG	3 cut(s)	539, 636, 816
BseNI	ACTGG	2 cut(s)	563, 671
BseXI	GCAGC	3 cut(s)	352, 754, 781
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	3 cut(s)	282, 645, 780
BshFI	GGCC	3 cut(s)	5, 437, 569
BshNI	GGYRCC	1 cut(s)	423
BsiHKAI	GWGCWC	2 cut(s)	129, 587
BsiSI	CCGG	2 cut(s)	189, 756
BslI	CCNNNNNNNGG	2 cut(s)	166, 433
BsnI	GGCC	3 cut(s)	5, 437, 569
Bsp1286I	GDGCHC	2 cut(s)	129, 587
Bsp143I	GATC	4 cut(s)	88, 556, 628, 777
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	3 cut(s)	5, 437, 569
BspCNI	CTCAG	3 cut(s)	538, 637, 817
BspHI	TCATGA	1 cut(s)	830
BspLI	GGNNCC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	623
BspT107I	GGYRCC	1 cut(s)	423
BsrDI	GCAATG	2 cut(s)	102, 174
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	563, 671
BssAI	RCCGGY	1 cut(s)	755
BssMI	GATC	4 cut(s)	88, 556, 628, 777
Bst4CI	ACNGT	2 cut(s)	602, 681
Bst6I	CTCTTC	1 cut(s)	735
BstBAI	YACGTR	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	525, 645, 825
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	6 cut(s)	33, 241, 295, 526, 655, 780
BstKTI	GATC	4 cut(s)	91, 559, 631, 780
BstMBI	GATC	4 cut(s)	88, 556, 628, 777
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 582
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	633
BstV1I	GCAGC	3 cut(s)	352, 754, 781
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	2 cut(s)	556, 628
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	2 cut(s)	556, 628
BsuRI	GGCC	3 cut(s)	5, 437, 569
BtsCI	GGATG	6 cut(s)	33, 241, 295, 526, 655, 780
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	4 cut(s)	123, 570, 678, 735
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	830
Cfr10I	RCCGGY	1 cut(s)	755
Csp6I	GTAC	3 cut(s)	172, 185, 424
CviAII	CATG	2 cut(s)	481, 831
CviQI	GTAC	3 cut(s)	172, 185, 424
DdeI	CTNAG	3 cut(s)	525, 645, 825
DpnI	GATC	4 cut(s)	90, 558, 630, 779
DpnII	GATC	4 cut(s)	88, 556, 628, 777
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
EciI	GGCGGA	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	759
Eco72I	CACGTG	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	431
FaeI	CATG	2 cut(s)	484, 834
FatI	CATG	2 cut(s)	480, 830
FbaI	TGATCA	1 cut(s)	777
Fnu4HI	GCNGC	3 cut(s)	366, 768, 795
FokI	GGATG	6 cut(s)	40, 248, 302, 533, 662, 767
Fsp4HI	GCNGC	3 cut(s)	366, 768, 795
FspBI	CTAG	1 cut(s)	260
GluI	GCNGC	3 cut(s)	366, 768, 795
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	5, 437, 569
HapII	CCGG	2 cut(s)	189, 756
Hin1II	CATG	2 cut(s)	484, 834
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	4 cut(s)	15, 109, 293, 827
HpaII	CCGG	2 cut(s)	189, 756
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	121, 277
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	5 cut(s)	44, 527, 580, 725, 831
Hpy8I	GTNNAC	2 cut(s)	121, 277
Hpy99I	CGWCG	1 cut(s)	644
HpyAV	CCTTC	2 cut(s)	5, 50
HpyCH4III	ACNGT	2 cut(s)	602, 681
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	116, 194, 299, 626, 770, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 582
HpyF3I	CTNAG	3 cut(s)	525, 645, 825
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	2 cut(s)	484, 834
KpnI	GGTACC	1 cut(s)	427
Ksp22I	TGATCA	1 cut(s)	777
Kzo9I	GATC	4 cut(s)	88, 556, 628, 777
LmnI	GCTCC	1 cut(s)	582
Lsp1109I	GCAGC	3 cut(s)	352, 754, 781
LweI	GCATC	2 cut(s)	511, 585
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	1 cut(s)	342
MalI	GATC	4 cut(s)	90, 558, 630, 779
MboI	GATC	4 cut(s)	88, 556, 628, 777
MboII	GAAGA	7 cut(s)	80, 144, 256, 259, 673, 706, 752
MflI	RGATCY	2 cut(s)	556, 628
MhlI	GDGCHC	2 cut(s)	129, 587
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	3 cut(s)	355, 380, 406
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	118, 180
MnlI	CCTC	5 cut(s)	16, 136, 171, 280, 640
Mox20I	TGGCCA	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	3 cut(s)	77, 270, 821
Msp20I	TGGCCA	1 cut(s)	569
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	2 cut(s)	189, 756
MspR9I	CCNGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	113, 582
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	4 cut(s)	88, 556, 628, 777
NlaIII	CATG	2 cut(s)	484, 834
NlaIV	GGNNCC	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	342
PagI	TCATGA	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	15, 109
PkrI	GCNGC	3 cut(s)	367, 769, 796
PleI	GAGTC	1 cut(s)	301
PmaCI	CACGTG	1 cut(s)	166
PmlI	CACGTG	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	166
PspCI	CACGTG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	556, 628
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	3 cut(s)	173, 186, 425
RsaNI	GTAC	3 cut(s)	172, 185, 424
SaqAI	TTAA	3 cut(s)	77, 270, 821
SatI	GCNGC	3 cut(s)	366, 768, 795
Sau3AI	GATC	4 cut(s)	88, 556, 628, 777
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	129, 587
SfaNI	GCATC	2 cut(s)	511, 585
SfcI	CTRYAG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse9I	AATT	3 cut(s)	355, 380, 406
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	602, 681
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	355, 380, 406
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	2 cut(s)	15, 109
Tru1I	TTAA	3 cut(s)	77, 270, 821
Tru9I	TTAA	3 cut(s)	77, 270, 821
TscAI	CASTG	4 cut(s)	123, 570, 678, 742
TseFI	GTSAC	1 cut(s)	342
TseI	GCWGC	3 cut(s)	365, 767, 794
Tsp45I	GTSAC	1 cut(s)	342
TspDTI	ATGAA	5 cut(s)	81, 252, 257, 351, 497
TspRI	CASTG	4 cut(s)	123, 570, 678, 742
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	2 cut(s)	163, 715
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.