Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002092

Physical Location & Seq

Genomic Coordinates Forward (+)

13071939 .. 13075094

Gene Structure 3156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGCGTACGAGCGAATTCTCTTGGGGATGGGCAACCCCCTTCTTGACATTTCTGCTGTTGTGGATGAAGATTTCTTGAAAAAATATGATATCAAGCCGAACAATGCTATTCTTGCCGAGGACAAGCACCTGCCCATGTATGACGAATTGGCTGCCAAGGGCAACGTAGAATACATTGCTGGAGGTGCTACTCAAAATTCAATCAAAGTTGCCCAGTGGATGCTCCAAGTTCCTGGTGCTACTAGTTACATAGGATGCATTGGGAAGGACAAGTTCGGCGAGGAGATGAAGAAAGATTGTACAAAGGCTGGTGTTAATGTACAATATTATGAAGATGAAAAGGCTCCAACAGGCACATGTGCAGTTTGTGTAGTTGGTGGTGAGAGGTCTCTTGTTGCTAACTTATCAGCTGCAAACTGTTACAAATCTGAGCATTTGAAGCGACCAGAAAATTGGGCCTTGGTGGAAAAGGCAAAATACTTCTACATTGCTGGGTTTTTCCTTACTGTGTCTCCAGAGTCAATTCAACTTGTTGCTGAACATGCAGCTGCAAACAATAAGGTCTTCATGATGAATCTTTCTGCTCCTTTCATATGCGAGTTCTTCAAGGATGTGCAGGAAAAAGCCCTACCGTACATGGACTATGTTTTTGGAAATGAGACAGAAGCAAGAACCTTTGCCAGGGTTCATGGCTGGGAGACTGAAAATGTTGAGGAGATCGCTATTAAGATTTCCCAGTTGCCCAAAGCATCAGGGACACACAAGAGGATTACTGTTATCACACAAGGAGCAGATCCTGTTGTGGTTGCTGAGGACGGGAAGGTGAAGTTATATCCTGTTATCTTGTTACCAAAGGAGAAGCTGGTTGATACCAATGGAGCTGGGGATGCATTTGTTGGAGGATTTTTGTCTCAGCTGGTTCAAGAGAAGCCCATTGAAGACTGTGTTAGAGCTGGTTGTTATGCATCCAATGTTGTCATCCAAAGGTCAGGCTGCACATACCCCGAAAAGCCTGATTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

342

Amino Acids

37.57

Weight (kDa)

5.33

Isoelectric Point (pI)

34.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	28 - 335	1.5e-76	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09820 AT3G09820 AT5G03300 AT5G03300 AT5G03300
fragaria_vesca	FvH4_6g16080 FvH4_6g16090 FvH4_6g16090 FvH4_7g19110
malus_domestica	MD01G1106200.v1.1 MD07G1172600.v1.1 MD12G1116000.v1.1
prunus_persica	Prupe.2G211700_v2.0.a1 Prupe.6G235100_v2.0.a1
pyrus_communis	pycom01g13290 pycom04g09090 pycom07g16710 pycom12g11550 pycom14g07710
rosa_chinensis	RchiOBHm_Chr1g0363001 RchiOBHm_Chr3g0469911 RchiOBHm_Chr3g0469921
rosa_laevigata	RLG00000024312 RLG00000024313 RLG00000027603
rosa_multiflora	Rmu_co8309403.1_g000001 Rmu_sc0000174.1_g000004 Rmu_sc0008730.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293560 Rroxscaffold_6G00411370
rosa_rugosa	Rorug01G0303400 Rorug03G0105500 Rorug03G0105600
rosa_samantha	Rh1AG312400 Rh1CG292600 Rh1DG306400 Rh3AG154400 Rh3BG178500 Rh3CG169100 Rh3DG196600 Rh3DG196700
rosa_wichuraiana	Rw1G027690 Rw3G014540 Rw3G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	788
AcsI	RAATTY	2 cut(s)	15, 196
AfaI	GTAC	4 cut(s)	8, 301, 321, 635
AfiI	CCNNNNNNNGG	1 cut(s)	681
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	7 cut(s)	79, 201, 439, 527, 607, 923, 938
AhlI	ACTAGT	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	232, 680
AluBI	AGCT	6 cut(s)	410, 548, 862, 881, 916, 953
AluI	AGCT	6 cut(s)	410, 548, 862, 881, 916, 953
Alw26I	GTCTC	5 cut(s)	393, 516, 653, 692, 915
AlwI	GGATC	1 cut(s)	788
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	1 cut(s)	456
ApeKI	GCWGC	5 cut(s)	152, 410, 545, 548, 993
ApoI	RAATTY	2 cut(s)	15, 196
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	2 cut(s)	392, 835
BbsI	GAAGAC	2 cut(s)	556, 945
BbvCI	CCTCAGC	1 cut(s)	810
BbvI	GCAGC	5 cut(s)	139, 397, 535, 557, 980
BccI	CCATC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	2 cut(s)	234, 682
BcoDI	GTCTC	5 cut(s)	393, 516, 653, 692, 915
BcuI	ACTAGT	1 cut(s)	242
BfaI	CTAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	5 cut(s)	153, 411, 546, 549, 994
BlsI	GCNGC	5 cut(s)	154, 412, 547, 550, 995
Bme1390I	CCNGG	2 cut(s)	234, 682
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	234, 682
BmrI	ACTGGG	2 cut(s)	208, 730
BmsI	GCATC	5 cut(s)	210, 245, 758, 877, 974
BmuI	ACTGGG	2 cut(s)	208, 730
BpiI	GAAGAC	2 cut(s)	556, 945
BpmI	CTGGAG	2 cut(s)	201, 498
Bpu10I	CCTNAGC	1 cut(s)	810
BsaI	GGTCTC	1 cut(s)	393
BsaJI	CCNNGG	4 cut(s)	117, 156, 459, 681
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	681
Bse1I	ACTGG	2 cut(s)	214, 736
Bse3DI	GCAATG	2 cut(s)	174, 486
BseBI	CCWGG	2 cut(s)	234, 682
BseDI	CCNNGG	4 cut(s)	117, 156, 459, 681
BseGI	GGATG	8 cut(s)	33, 70, 225, 260, 616, 892, 965, 978
BseLI	CCNNNNNNNGG	1 cut(s)	681
BseMI	GCAATG	2 cut(s)	174, 486
BseMII	CTCAG	3 cut(s)	420, 801, 926
BseNI	ACTGG	2 cut(s)	214, 736
BseRI	GAGGAG	2 cut(s)	296, 728
BseXI	GCAGC	5 cut(s)	139, 397, 535, 557, 980
BseYI	CCCAGC	3 cut(s)	491, 693, 881
BsgI	GTGCAG	3 cut(s)	381, 635, 979
BshFI	GGCC	1 cut(s)	458
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	1 cut(s)	681
BsmAI	GTCTC	5 cut(s)	393, 516, 653, 692, 915
BsmFI	GGGAC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	458
Bso31I	GGTCTC	1 cut(s)	393
Bsp1407I	TGTACA	2 cut(s)	299, 319
Bsp143I	GATC	2 cut(s)	717, 793
BspANI	GGCC	1 cut(s)	458
BspCNI	CTCAG	3 cut(s)	421, 802, 925
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	138
BspPI	GGATC	1 cut(s)	788
BspTNI	GGTCTC	1 cut(s)	393
BsrDI	GCAATG	2 cut(s)	174, 486
BsrGI	TGTACA	2 cut(s)	299, 319
BsrI	ACTGG	2 cut(s)	214, 736
BssECI	CCNNGG	4 cut(s)	117, 156, 459, 681
BssMI	GATC	2 cut(s)	717, 793
BssT1I	CCWWGG	2 cut(s)	156, 459
Bst2UI	CCWGG	2 cut(s)	234, 682
Bst4CI	ACNGT	5 cut(s)	419, 508, 633, 775, 944
BstAUI	TGTACA	2 cut(s)	299, 319
BstDEI	CTNAG	3 cut(s)	429, 810, 912
BstENI	CCTNNNNNAGG	1 cut(s)	679
BstF5I	GGATG	8 cut(s)	33, 70, 225, 260, 616, 892, 965, 978
BstKTI	GATC	2 cut(s)	720, 796
BstMAI	GTCTC	5 cut(s)	393, 516, 653, 692, 915
BstMBI	GATC	2 cut(s)	717, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 185, 439, 542, 887
BstNI	CCWGG	2 cut(s)	234, 682
BstNSI	RCATGY	2 cut(s)	360, 545
BstSCI	CCNGG	2 cut(s)	232, 680
BstV1I	GCAGC	5 cut(s)	139, 397, 535, 557, 980
BstV2I	GAAGAC	2 cut(s)	556, 945
BstX2I	RGATCY	1 cut(s)	793
BstXI	CCANNNNNNTGG	2 cut(s)	233, 453
BstYI	RGATCY	1 cut(s)	793
BsuRI	GGCC	1 cut(s)	458
BtsCI	GGATG	8 cut(s)	33, 70, 225, 260, 616, 892, 965, 978
BtsIMutI	CAGTG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	456
Csp6I	GTAC	4 cut(s)	7, 300, 320, 634
CviAII	CATG	6 cut(s)	136, 357, 542, 568, 637, 689
CviQI	GTAC	4 cut(s)	7, 300, 320, 634
DdeI	CTNAG	3 cut(s)	429, 810, 912
DpnI	GATC	2 cut(s)	719, 795
DpnII	GATC	2 cut(s)	717, 793
Eco130I	CCWWGG	2 cut(s)	156, 459
Eco31I	GGTCTC	1 cut(s)	393
Eco32I	GATATC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	679
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	232, 680
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	156, 459
EcoT22I	ATGCAT	3 cut(s)	260, 892, 967
ErhI	CCWWGG	2 cut(s)	156, 459
FaeI	CATG	6 cut(s)	139, 360, 545, 571, 640, 692
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	6 cut(s)	135, 356, 541, 567, 636, 688
FauNDI	CATATG	1 cut(s)	593
Fnu4HI	GCNGC	5 cut(s)	153, 411, 546, 549, 994
FokI	GGATG	8 cut(s)	40, 77, 232, 267, 623, 899, 952, 965
Fsp4HI	GCNGC	5 cut(s)	153, 411, 546, 549, 994
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	5 cut(s)	153, 411, 546, 549, 994
GsaI	CCCAGC	3 cut(s)	495, 697, 885
GsuI	CTGGAG	2 cut(s)	201, 498
HaeIII	GGCC	1 cut(s)	458
Hin1II	CATG	6 cut(s)	139, 360, 545, 571, 640, 692
HinfI	GANTC	2 cut(s)	518, 574
HphI	GGTGA	2 cut(s)	392, 835
Hpy188I	TCNGA	1 cut(s)	430
Hpy188III	TCNNGA	5 cut(s)	44, 76, 515, 568, 923
HpyAV	CCTTC	3 cut(s)	50, 259, 814
HpyCH4III	ACNGT	5 cut(s)	419, 508, 633, 775, 944
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	9 cut(s)	258, 362, 413, 545, 551, 616, 890, 965, 996
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 185, 439, 542, 887
HpyF3I	CTNAG	3 cut(s)	429, 810, 912
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	6 cut(s)	139, 360, 545, 571, 640, 692
Kzo9I	GATC	2 cut(s)	717, 793
LmnI	GCTCC	5 cut(s)	228, 349, 589, 788, 878
Lsp1109I	GCAGC	5 cut(s)	139, 397, 535, 557, 980
LweI	GCATC	5 cut(s)	210, 245, 758, 877, 974
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	3 cut(s)	245, 419, 846
MalI	GATC	2 cut(s)	719, 795
MboI	GATC	2 cut(s)	717, 793
MboII	GAAGA	6 cut(s)	80, 301, 344, 556, 595, 950
MflI	RGATCY	1 cut(s)	793
MluCI	AATT	5 cut(s)	15, 146, 196, 451, 522
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	2 cut(s)	371, 877
MnlI	CCTC	8 cut(s)	112, 176, 274, 378, 706, 759, 805, 893
Mph1103I	ATGCAT	3 cut(s)	260, 892, 967
MseI	TTAA	2 cut(s)	315, 726
MspA1I	CMGCKG	3 cut(s)	410, 548, 916
MspR9I	CCNGG	2 cut(s)	234, 682
MvaI	CCWGG	2 cut(s)	234, 682
MwoI	GCNNNNNNNGC	5 cut(s)	113, 185, 439, 542, 887
NdeI	CATATG	1 cut(s)	593
NdeII	GATC	2 cut(s)	717, 793
NlaIII	CATG	6 cut(s)	139, 360, 545, 571, 640, 692
NlaIV	GGNNCC	1 cut(s)	345
NmeAIII	GCCGAG	1 cut(s)	142
NsiI	ATGCAT	3 cut(s)	260, 892, 967
NspI	RCATGY	2 cut(s)	360, 545
PagI	TCATGA	1 cut(s)	567
PaqCI	CACCTGC	1 cut(s)	138
PciI	ACATGT	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	574
Pfl23II	CGTACG	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	154, 412, 547, 550, 995
PleI	GAGTC	1 cut(s)	526
PpsI	GAGTC	1 cut(s)	526
PscI	ACATGT	1 cut(s)	356
Psp6I	CCWGG	2 cut(s)	232, 680
PspFI	CCCAGC	3 cut(s)	491, 693, 881
PspGI	CCWGG	2 cut(s)	232, 680
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	1 cut(s)	793
PvuII	CAGCTG	3 cut(s)	410, 548, 916
RsaI	GTAC	4 cut(s)	8, 301, 321, 635
RsaNI	GTAC	4 cut(s)	7, 300, 320, 634
SaqAI	TTAA	2 cut(s)	315, 726
SatI	GCNGC	5 cut(s)	153, 411, 546, 549, 994
Sau3AI	GATC	2 cut(s)	717, 793
Sau96I	GGNCC	1 cut(s)	456
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	234, 682
SfaNI	GCATC	5 cut(s)	210, 245, 758, 877, 974
SpeI	ACTAGT	1 cut(s)	242
Sse9I	AATT	5 cut(s)	15, 146, 196, 451, 522
SspI	AATATT	1 cut(s)	326
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	232, 680
StyI	CCWWGG	2 cut(s)	156, 459
TaaI	ACNGT	5 cut(s)	419, 508, 633, 775, 944
TaiI	ACGT	1 cut(s)	168
TasI	AATT	5 cut(s)	15, 146, 196, 451, 522
TatI	WGTACW	2 cut(s)	299, 319
TfiI	GAWTC	1 cut(s)	574
Tru1I	TTAA	2 cut(s)	315, 726
Tru9I	TTAA	2 cut(s)	315, 726
TscAI	CASTG	1 cut(s)	221
TseI	GCWGC	5 cut(s)	152, 410, 545, 548, 993
TspDTI	ATGAA	8 cut(s)	81, 302, 345, 351, 556, 580, 587, 677
TspRI	CASTG	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	679
XapI	RAATTY	2 cut(s)	15, 196
XceI	RCATGY	2 cut(s)	360, 545
XspI	CTAG	1 cut(s)	243
Zsp2I	ATGCAT	3 cut(s)	260, 892, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.