Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002092

Physical Location & Seq

Genomic Coordinates Forward (+)

13795332 .. 13798729

Gene Structure 3398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00293560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGCGTACGAGCGAATTCTCTTGGGGATGGGCAACCCCTTCTTGACATTTCTGCTGTTATATGATATCAAGCCGAACAATGCTATTCTTGCTGAGGACAAGCACCTGCCCATGTATGACGAAATGGCTGCCAAGGGCAACGTAGAATACATTGCTGGAGGTGCTACTCAAAATTCAATCAAAGTTGCCCAGTGGATGCTCCAAGTTCCTGGTGCTACTAGTTACATAGGATGCATTGGGAAGGACAAGTTTGGCGAGGAGATGAAGAAAGATTGTGCAAAGGCTGGTGTTAATGTACAATATTATGAAGATGAAAAGGCTCCAACAGGCACATGTGCAGTTTGTGTAGTTGGTGGTGAGAGGTCTCTTGTTGCTAACTTATCAGCTGCAAACTGTTACAAATCTGAGCATTTGAAGCGACCAGAAAATTGGGCCTTGGTGGAAAAGGCAAAATACTTCTACATTGCTGGGTTTTTCCTTACTGTGTCTCCAGAGTCAATTCAACTTGTTGCTGAACATGCAGCTGCAAACAATAAGGTCTTCATGATGAATCTTTCTGCTCCTTTCATATGCGAGTTCTTCAAGGATGTGCAGGAGAAAGCCCTACCGTACATGGACTATGTTTTTGGAAATGAGACAGAAGCAAGAACCTTTGCCAGGGTTCATGGCTGGGAGACTGAAAATGTTGAGGAGATCGCTATTAAGATTTCCCAGTTGCCCAAAGCATCAGGGACACACAAGAGGATTACTGTTATCACGCAAGGAGCAGATCCTGTTGTGGTTGCTGAGGACGGGAAGGTGAAGTTATATCCTGTTATCTTGTTACCAAAGGAGAAGCTGGTTGATACCAATGGAGCTGGGGATGCATTTGTTGGAGGATTTTTGTCTCAGCTGGTTCAAGAGAAGCCCATTGAAGACTGTGTTAGAGCTGGTTGTTATGCATCCAATGTTGTCATCCAAAGGTCAGGCTGCACATACCCCGAAAAGCCTGATTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

333

Amino Acids

36.72

Weight (kDa)

5.52

Isoelectric Point (pI)

35.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	17 - 327	9.3e-77	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09820 AT3G09820 AT5G03300 AT5G03300 AT5G03300
fragaria_vesca	FvH4_6g16080 FvH4_6g16090 FvH4_6g16090 FvH4_7g19110
malus_domestica	MD01G1106200.v1.1 MD07G1172600.v1.1 MD12G1116000.v1.1
prunus_persica	Prupe.2G211700_v2.0.a1 Prupe.6G235100_v2.0.a1
pyrus_communis	pycom01g13290 pycom04g09090 pycom07g16710 pycom12g11550 pycom14g07710
rosa_chinensis	RchiOBHm_Chr1g0363001 RchiOBHm_Chr3g0469911 RchiOBHm_Chr3g0469921
rosa_laevigata	RLG00000024312 RLG00000024313 RLG00000027603
rosa_multiflora	Rmu_co8309403.1_g000001 Rmu_sc0000174.1_g000004 Rmu_sc0008730.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293560 Rroxscaffold_6G00411370
rosa_rugosa	Rorug01G0303400 Rorug03G0105500 Rorug03G0105600
rosa_samantha	Rh1AG312400 Rh1CG292600 Rh1DG306400 Rh3AG154400 Rh3BG178500 Rh3CG169100 Rh3DG196600 Rh3DG196700
rosa_wichuraiana	Rw1G027690 Rw3G014540 Rw3G014550

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	114
Acc36I	ACCTGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	764
AcsI	RAATTY	2 cut(s)	15, 172
AfaI	GTAC	3 cut(s)	8, 297, 611
AfiI	CCNNNNNNNGG	1 cut(s)	657
AflIII	ACRYGT	1 cut(s)	332
AgsI	TTSAA	6 cut(s)	177, 415, 503, 583, 899, 914
AhlI	ACTAGT	1 cut(s)	218
AjnI	CCWGG	2 cut(s)	208, 656
AluBI	AGCT	6 cut(s)	386, 524, 838, 857, 892, 929
AluI	AGCT	6 cut(s)	386, 524, 838, 857, 892, 929
Alw26I	GTCTC	5 cut(s)	369, 492, 629, 668, 891
AlwI	GGATC	1 cut(s)	764
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	1 cut(s)	432
ApeKI	GCWGC	5 cut(s)	128, 386, 521, 524, 969
ApoI	RAATTY	2 cut(s)	15, 172
ArsI	GACNNNNNNTTYG	2 cut(s)	608, 640
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	368, 811
BbsI	GAAGAC	2 cut(s)	532, 921
BbvCI	CCTCAGC	2 cut(s)	93, 786
BbvI	GCAGC	5 cut(s)	115, 373, 511, 533, 956
BccI	CCATC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciT130I	CCWGG	2 cut(s)	210, 658
BcoDI	GTCTC	5 cut(s)	369, 492, 629, 668, 891
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	5 cut(s)	129, 387, 522, 525, 970
BlsI	GCNGC	5 cut(s)	130, 388, 523, 526, 971
Bme1390I	CCNGG	2 cut(s)	210, 658
BmgT120I	GGNCC	1 cut(s)	432
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	210, 658
BmrI	ACTGGG	2 cut(s)	184, 706
BmsI	GCATC	5 cut(s)	186, 221, 734, 853, 950
BmuI	ACTGGG	2 cut(s)	184, 706
BpiI	GAAGAC	2 cut(s)	532, 921
BpmI	CTGGAG	2 cut(s)	177, 474
Bpu10I	CCTNAGC	2 cut(s)	93, 786
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	132, 435, 657
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	657
Bse1I	ACTGG	2 cut(s)	190, 712
Bse3DI	GCAATG	2 cut(s)	150, 462
BseBI	CCWGG	2 cut(s)	210, 658
BseDI	CCNNGG	3 cut(s)	132, 435, 657
BseGI	GGATG	7 cut(s)	33, 201, 236, 592, 868, 941, 954
BseLI	CCNNNNNNNGG	1 cut(s)	657
BseMI	GCAATG	2 cut(s)	150, 462
BseMII	CTCAG	4 cut(s)	84, 396, 777, 902
BseNI	ACTGG	2 cut(s)	190, 712
BseRI	GAGGAG	2 cut(s)	272, 704
BseXI	GCAGC	5 cut(s)	115, 373, 511, 533, 956
BseYI	CCCAGC	3 cut(s)	467, 669, 857
BsgI	GTGCAG	3 cut(s)	357, 611, 955
BshFI	GGCC	1 cut(s)	434
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	745
BslI	CCNNNNNNNGG	1 cut(s)	657
BsmAI	GTCTC	5 cut(s)	369, 492, 629, 668, 891
BsmFI	GGGAC	1 cut(s)	745
BsnI	GGCC	1 cut(s)	434
Bso31I	GGTCTC	1 cut(s)	369
Bsp1407I	TGTACA	1 cut(s)	295
Bsp143I	GATC	2 cut(s)	693, 769
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	4 cut(s)	85, 397, 778, 901
BspHI	TCATGA	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	150, 462
BsrGI	TGTACA	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	190, 712
BssECI	CCNNGG	3 cut(s)	132, 435, 657
BssMI	GATC	2 cut(s)	693, 769
BssT1I	CCWWGG	2 cut(s)	132, 435
Bst2UI	CCWGG	2 cut(s)	210, 658
Bst4CI	ACNGT	5 cut(s)	395, 484, 609, 751, 920
BstAUI	TGTACA	1 cut(s)	295
BstDEI	CTNAG	4 cut(s)	93, 405, 786, 888
BstENI	CCTNNNNNAGG	1 cut(s)	655
BstF5I	GGATG	7 cut(s)	33, 201, 236, 592, 868, 941, 954
BstKTI	GATC	2 cut(s)	696, 772
BstMAI	GTCTC	5 cut(s)	369, 492, 629, 668, 891
BstMBI	GATC	2 cut(s)	693, 769
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 161, 415, 518, 863
BstNI	CCWGG	2 cut(s)	210, 658
BstNSI	RCATGY	2 cut(s)	336, 521
BstSCI	CCNGG	2 cut(s)	208, 656
BstV1I	GCAGC	5 cut(s)	115, 373, 511, 533, 956
BstV2I	GAAGAC	2 cut(s)	532, 921
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	2 cut(s)	209, 429
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	1 cut(s)	434
BtsCI	GGATG	7 cut(s)	33, 201, 236, 592, 868, 941, 954
BtsIMutI	CAGTG	1 cut(s)	197
BveI	ACCTGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	773
CciI	TCATGA	1 cut(s)	543
Cfr13I	GGNCC	1 cut(s)	432
Csp6I	GTAC	3 cut(s)	7, 296, 610
CviAII	CATG	6 cut(s)	112, 333, 518, 544, 613, 665
CviQI	GTAC	3 cut(s)	7, 296, 610
DdeI	CTNAG	4 cut(s)	93, 405, 786, 888
DpnI	GATC	2 cut(s)	695, 771
DpnII	GATC	2 cut(s)	693, 769
Eco130I	CCWWGG	2 cut(s)	132, 435
Eco31I	GGTCTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	655
EcoRI	GAATTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	208, 656
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	132, 435
EcoT22I	ATGCAT	3 cut(s)	236, 868, 943
ErhI	CCWWGG	2 cut(s)	132, 435
FaeI	CATG	6 cut(s)	115, 336, 521, 547, 616, 668
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	6 cut(s)	111, 332, 517, 543, 612, 664
FauNDI	CATATG	1 cut(s)	569
Fnu4HI	GCNGC	5 cut(s)	129, 387, 522, 525, 970
FokI	GGATG	7 cut(s)	40, 208, 243, 599, 875, 928, 941
Fsp4HI	GCNGC	5 cut(s)	129, 387, 522, 525, 970
FspBI	CTAG	1 cut(s)	219
GluI	GCNGC	5 cut(s)	129, 387, 522, 525, 970
GsaI	CCCAGC	3 cut(s)	471, 673, 861
GsuI	CTGGAG	2 cut(s)	177, 474
HaeIII	GGCC	1 cut(s)	434
Hin1II	CATG	6 cut(s)	115, 336, 521, 547, 616, 668
HinfI	GANTC	2 cut(s)	494, 550
HphI	GGTGA	2 cut(s)	368, 811
Hpy188I	TCNGA	1 cut(s)	406
Hpy188III	TCNNGA	4 cut(s)	43, 491, 544, 899
HpyAV	CCTTC	3 cut(s)	49, 235, 790
HpyCH4III	ACNGT	5 cut(s)	395, 484, 609, 751, 920
HpyCH4IV	ACGT	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 161, 415, 518, 863
HpyF3I	CTNAG	4 cut(s)	93, 405, 786, 888
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	6 cut(s)	115, 336, 521, 547, 616, 668
Kzo9I	GATC	2 cut(s)	693, 769
LmnI	GCTCC	5 cut(s)	204, 325, 565, 764, 854
Lsp1109I	GCAGC	5 cut(s)	115, 373, 511, 533, 956
LweI	GCATC	5 cut(s)	186, 221, 734, 853, 950
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	3 cut(s)	221, 395, 822
MalI	GATC	2 cut(s)	695, 771
MboI	GATC	2 cut(s)	693, 769
MboII	GAAGA	5 cut(s)	277, 320, 532, 571, 926
MflI	RGATCY	1 cut(s)	769
MluCI	AATT	4 cut(s)	15, 172, 427, 498
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	2 cut(s)	347, 853
MnlI	CCTC	8 cut(s)	88, 152, 250, 354, 682, 735, 781, 869
Mph1103I	ATGCAT	3 cut(s)	236, 868, 943
MseI	TTAA	2 cut(s)	291, 702
MspA1I	CMGCKG	3 cut(s)	386, 524, 892
MspR9I	CCNGG	2 cut(s)	210, 658
MvaI	CCWGG	2 cut(s)	210, 658
MwoI	GCNNNNNNNGC	5 cut(s)	89, 161, 415, 518, 863
NdeI	CATATG	1 cut(s)	569
NdeII	GATC	2 cut(s)	693, 769
NlaIII	CATG	6 cut(s)	115, 336, 521, 547, 616, 668
NlaIV	GGNNCC	1 cut(s)	321
NsiI	ATGCAT	3 cut(s)	236, 868, 943
NspI	RCATGY	2 cut(s)	336, 521
PagI	TCATGA	1 cut(s)	543
PaqCI	CACCTGC	1 cut(s)	114
PciI	ACATGT	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	550
Pfl23II	CGTACG	1 cut(s)	6
PkrI	GCNGC	5 cut(s)	130, 388, 523, 526, 971
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PscI	ACATGT	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	208, 656
PspFI	CCCAGC	3 cut(s)	467, 669, 857
PspGI	CCWGG	2 cut(s)	208, 656
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	773
PsuI	RGATCY	1 cut(s)	769
PvuII	CAGCTG	3 cut(s)	386, 524, 892
RsaI	GTAC	3 cut(s)	8, 297, 611
RsaNI	GTAC	3 cut(s)	7, 296, 610
SaqAI	TTAA	2 cut(s)	291, 702
SatI	GCNGC	5 cut(s)	129, 387, 522, 525, 970
Sau3AI	GATC	2 cut(s)	693, 769
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	210, 658
SfaNI	GCATC	5 cut(s)	186, 221, 734, 853, 950
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	4 cut(s)	15, 172, 427, 498
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	208, 656
StyI	CCWWGG	2 cut(s)	132, 435
TaaI	ACNGT	5 cut(s)	395, 484, 609, 751, 920
TaiI	ACGT	1 cut(s)	144
TasI	AATT	4 cut(s)	15, 172, 427, 498
TatI	WGTACW	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	2 cut(s)	291, 702
Tru9I	TTAA	2 cut(s)	291, 702
TscAI	CASTG	1 cut(s)	197
TseI	GCWGC	5 cut(s)	128, 386, 521, 524, 969
TspDTI	ATGAA	7 cut(s)	278, 321, 327, 532, 556, 563, 653
TspRI	CASTG	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	655
XapI	RAATTY	2 cut(s)	15, 172
XceI	RCATGY	2 cut(s)	336, 521
XspI	CTAG	1 cut(s)	219
Zsp2I	ATGCAT	3 cut(s)	236, 868, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.