Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002092

Physical Location & Seq

Genomic Coordinates Reverse (-)

19131785 .. 19133597

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g16710.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAGAAAAATTGTAAACATGCTGGTGTTAATGTGCAATATTATGAAGATGACAAAGCTCCAACAGGAACATGTGCTGTTTGTGTAGTTGGTGGTGAGAGGTCTCTAGTTGCTAACTTATCAGCTGCAAATTGTTACAAAACTGAGCATTTAAAGCAACCTGAAAATTGGGCTCTGGTTGAAAAGGCAAAATATTACTACATTGCTGGGTTTTTCCTTACTGTGTCTCCTGAGTCCATTCAACTGGTTGCTGAACATGCTGCTGCAAACAATAAGGTATTCACAATGAATCTTTCCGCTCCTTTCATTTGTGAGTTCTTCAAGGATGTACAGGAGAAAGCACTTCCGTACATGGACTATGTTTTTGGGAATGAGACCGAAGCAAGAACCTTTTCAAGGGTTCATGGCTGGAAGACTGAAAATGTTGAGGAGATCGCCATAAAGATTTCCCAGTTGCCCAAAGCATCGGGTACACACAAGAGGATTACTGTTATCACACAAGGTGCAGATCCTGTTGTAGTTGCTGAGGATGGGAAGGTGAAACTATTTCCTGTCATATTGTTACCGAAGGAGAAGCTGGTTGATACCAATGGAGCCGGAGATGCATTTGTTGGGGGATTTTTGTCACAGCTGGTTCAAGAGAAGCCAATTGAAAACTGCGTTAAAGCTGGTTGTTATGCAGCAAATGTTGTCATCCAAAGGTCAGGCTGCACGTTCCCAGAAAAGCCCGTTTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

247

Amino Acids

27.08

Weight (kDa)

6.99

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09820 AT3G09820 AT5G03300 AT5G03300 AT5G03300
fragaria_vesca	FvH4_6g16080 FvH4_6g16090 FvH4_6g16090 FvH4_7g19110
malus_domestica	MD01G1106200.v1.1 MD07G1172600.v1.1 MD12G1116000.v1.1
prunus_persica	Prupe.2G211700_v2.0.a1 Prupe.6G235100_v2.0.a1
pyrus_communis	pycom01g13290 pycom04g09090 pycom07g16710 pycom12g11550 pycom14g07710
rosa_chinensis	RchiOBHm_Chr1g0363001 RchiOBHm_Chr3g0469911 RchiOBHm_Chr3g0469921
rosa_laevigata	RLG00000024312 RLG00000024313 RLG00000027603
rosa_multiflora	Rmu_co8309403.1_g000001 Rmu_sc0000174.1_g000004 Rmu_sc0008730.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293560 Rroxscaffold_6G00411370
rosa_rugosa	Rorug01G0303400 Rorug03G0105500 Rorug03G0105600
rosa_samantha	Rh1AG312400 Rh1CG292600 Rh1DG306400 Rh3AG154400 Rh3BG178500 Rh3CG169100 Rh3DG196600 Rh3DG196700
rosa_wichuraiana	Rw1G027690 Rw3G014540 Rw3G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	1 cut(s)	503
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	330, 350, 472
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	71
AgsI	TTSAA	6 cut(s)	182, 242, 322, 396, 638, 653
AluBI	AGCT	5 cut(s)	59, 125, 577, 631, 668
AluI	AGCT	5 cut(s)	59, 125, 577, 631, 668
Alw26I	GTCTC	3 cut(s)	108, 231, 368
AlwI	GGATC	1 cut(s)	503
AlwNI	CAGNNNCTG	1 cut(s)	512
ApeKI	GCWGC	5 cut(s)	125, 260, 263, 680, 708
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
Asp700I	GAANNNNTTC	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	107, 550
BanII	GRGCYC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	419
BbvCI	CCTCAGC	1 cut(s)	525
BbvI	GCAGC	5 cut(s)	112, 247, 250, 692, 695
BccI	CCATC	1 cut(s)	524
BcoDI	GTCTC	3 cut(s)	108, 231, 368
BfaI	CTAG	1 cut(s)	107
BisI	GCNGC	5 cut(s)	126, 261, 264, 681, 709
BlsI	GCNGC	5 cut(s)	127, 262, 265, 682, 710
BmiI	GGNNCC	1 cut(s)	595
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	2 cut(s)	473, 592
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	525
BsaI	GGTCTC	2 cut(s)	108, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	2 cut(s)	249, 451
Bse3DI	GCAATG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	331, 535, 693
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	3 cut(s)	135, 222, 516
BseNI	ACTGG	2 cut(s)	249, 451
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	5 cut(s)	112, 247, 250, 692, 695
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	2 cut(s)	525, 694
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	3 cut(s)	108, 231, 368
Bso31I	GGTCTC	2 cut(s)	108, 368
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	432, 508
BspACI	CCGC	1 cut(s)	297
BspCNI	CTCAG	3 cut(s)	136, 223, 517
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	503
BspTNI	GGTCTC	2 cut(s)	108, 368
BsrBI	CCGCTC	1 cut(s)	299
BsrDI	GCAATG	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	249, 451
BssMI	GATC	2 cut(s)	432, 508
Bst4CI	ACNGT	2 cut(s)	223, 490
BstAUI	TGTACA	1 cut(s)	328
BstDEI	CTNAG	3 cut(s)	144, 231, 525
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	3 cut(s)	331, 535, 693
BstKTI	GATC	2 cut(s)	435, 511
BstMAI	GTCTC	3 cut(s)	108, 231, 368
BstMBI	GATC	2 cut(s)	432, 508
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 257, 602
BstNSI	RCATGY	3 cut(s)	23, 75, 260
BstV1I	GCAGC	5 cut(s)	112, 247, 250, 692, 695
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	508
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	331, 535, 693
CaiI	CAGNNNCTG	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	329, 349, 471
CviAII	CATG	5 cut(s)	20, 72, 257, 352, 404
CviQI	GTAC	3 cut(s)	329, 349, 471
DdeI	CTNAG	3 cut(s)	144, 231, 525
DpnI	GATC	2 cut(s)	434, 510
DpnII	GATC	2 cut(s)	432, 508
DraI	TTTAAA	1 cut(s)	153
DraIII	CACNNNGTG	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	175
Eco31I	GGTCTC	2 cut(s)	108, 368
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	607
EcoT38I	GRGCYC	1 cut(s)	175
FaeI	CATG	5 cut(s)	23, 75, 260, 355, 407
FatI	CATG	5 cut(s)	19, 71, 256, 351, 403
Fnu4HI	GCNGC	5 cut(s)	126, 261, 264, 681, 709
FokI	GGATG	3 cut(s)	338, 542, 680
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	5 cut(s)	126, 261, 264, 681, 709
FspBI	CTAG	1 cut(s)	107
GluI	GCNGC	5 cut(s)	126, 261, 264, 681, 709
GsaI	CCCAGC	1 cut(s)	210
HapII	CCGG	1 cut(s)	597
Hin1II	CATG	5 cut(s)	23, 75, 260, 355, 407
HinfI	GANTC	2 cut(s)	233, 289
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	2 cut(s)	107, 550
Hpy166II	GTNNAC	2 cut(s)	17, 473
Hpy188III	TCNNGA	2 cut(s)	230, 638
Hpy8I	GTNNAC	2 cut(s)	17, 473
HpyAV	CCTTC	2 cut(s)	529, 562
HpyCH4III	ACNGT	2 cut(s)	223, 490
HpyCH4IV	ACGT	1 cut(s)	713
HpyCH4V	TGCA	7 cut(s)	37, 128, 266, 506, 605, 680, 711
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 257, 602
HpyF3I	CTNAG	3 cut(s)	144, 231, 525
HpySE526I	ACGT	1 cut(s)	713
Hsp92II	CATG	5 cut(s)	23, 75, 260, 355, 407
Kzo9I	GATC	2 cut(s)	432, 508
LmnI	GCTCC	3 cut(s)	64, 304, 593
Lsp1109I	GCAGC	5 cut(s)	112, 247, 250, 692, 695
LweI	GCATC	2 cut(s)	473, 592
MaeI	CTAG	1 cut(s)	107
MaeII	ACGT	1 cut(s)	713
MaeIII	GTNAC	3 cut(s)	134, 561, 624
MalI	GATC	2 cut(s)	434, 510
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	2 cut(s)	432, 508
MboII	GAAGA	4 cut(s)	16, 59, 310, 424
MfeI	CAATTG	1 cut(s)	648
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	4 cut(s)	10, 130, 166, 648
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	4 cut(s)	93, 421, 474, 520
Mph1103I	ATGCAT	1 cut(s)	607
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	3 cut(s)	30, 152, 663
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	125, 631
MspI	CCGG	1 cut(s)	597
MunI	CAATTG	1 cut(s)	648
MwoI	GCNNNNNNNGC	3 cut(s)	154, 257, 602
NdeII	GATC	2 cut(s)	432, 508
NlaIII	CATG	5 cut(s)	23, 75, 260, 355, 407
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	624
NsiI	ATGCAT	1 cut(s)	607
NspI	RCATGY	3 cut(s)	23, 75, 260
PciI	ACATGT	1 cut(s)	71
PdmI	GAANNNNTTC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	5 cut(s)	127, 262, 265, 682, 710
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	508
PvuII	CAGCTG	2 cut(s)	125, 631
RsaI	GTAC	3 cut(s)	330, 350, 472
RsaNI	GTAC	3 cut(s)	329, 349, 471
RseI	CAYNNNNRTG	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	30, 152, 663
SatI	GCNGC	5 cut(s)	126, 261, 264, 681, 709
Sau3AI	GATC	2 cut(s)	432, 508
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	473, 592
SmiMI	CAYNNNNRTG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	10, 130, 166, 648
SsiI	CCGC	1 cut(s)	297
SspI	AATATT	2 cut(s)	41, 194
SspMI	CTAG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	223, 490
TaiI	ACGT	1 cut(s)	716
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	4 cut(s)	10, 130, 166, 648
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	3 cut(s)	30, 152, 663
Tru9I	TTAA	3 cut(s)	30, 152, 663
TseFI	GTSAC	1 cut(s)	624
TseI	GCWGC	5 cut(s)	125, 260, 263, 680, 708
Tsp45I	GTSAC	1 cut(s)	624
TspDTI	ATGAA	5 cut(s)	17, 60, 295, 302, 392
TspGWI	ACGGA	1 cut(s)	336
XagI	CCTNNNNNAGG	1 cut(s)	394
XceI	RCATGY	3 cut(s)	23, 75, 260
XmnI	GAANNNNTTC	1 cut(s)	391
XspI	CTAG	1 cut(s)	107
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.