Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002092

Physical Location & Seq

Genomic Coordinates Reverse (-)

15856161 .. 15859855

Gene Structure 3695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAGTTTGGGGGTTGGTGACGTTAGTGACACTACACCATTTCACCTCCAAATCTTCACTTGCCAACACACTATAAATAACTCACAAAAACCAACCCCCTCACTTCGTGCTCAGCTCTATTCTCTCTCAACACAACTCTCACTAATTATGGCGTACGAGCGAATTCTGTTGGGGATGGGCAACCCCCTTCTCGACATTTCTGCTGTTGTCGACGATGAATTCCTGAAAAAATATGACATCAAGCCGAACAATGCTATTCTTGCTGAGGACAAGCACCTGCCCATGTATGACGAATTGGCTGCCAAGGGCAACGTAGAATTCATTGCTGGAGGTGCTACTCAAAATTCAATCAAAGTTGCCCAGTGGATGCTCCAAGTTCCTGGTGCTACTAGTTACATAGGATGCATTGGGAAGGACAAGTTTGGCGAGGAGATGAAGAAAGATTGTACAAAGGCTGGTGTTAATGTACAATATTATGAGGATGAAAAGGCTCCAACAGGCACATGTGCAGTGTGTGTAGTTGGTGGTGAGAGGTCGCTTGTTGCTAATTTATCAGCTGCAAACTGTTATAAATCTGAGCATTTGAAGCGACCAGAAAATTGGGCCTTGGTGGAAAAGGCGAAATACTTCTACATTGCAGGGTTCTTCCTTACCGTGTCTCCAGAGTCAATTCAACTTGTTGCTGAACATGCAGTTGCAAAAAATAAGGTCTTCATGATGAACCTCTCTGCTCCTTTCATATGCGAGTTTTTCAAGGACGTGCAGGAGAAAGCCCTACCGTTCATGGACTATGTTTTTGGAAATGAGACAGAAGCTAGAACCTTTTCCAGGGTTCATGGCTGGGAGACTGAAAATGTTGAGGAGATTGCTATTAAGATTTCCCAGTTGCCCAAAGCATCAGGGACACACAAGAGGATTACTGTTATCACACAAGGAGCAGATCCTGTTGTCATTGCTGAGGACGGGAAGGTGAAGTTATTTCCTGTAATCCTGTTACCAAAGGAGAAGCTGGTTGATACCAATGGAGCTGGGGATGCATTTGTTGGAGGATTTTTGTCTCAGCTGGTTCAAGAGAAGCCCATTGAAGACTGTGTTAGAGCTGGTTGTTATGCATCCAATGTTGTCATCCAAAGGTCAGGTTGCACATACCCTGAAAAGCCTGATTTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004001 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006163 GO:0006164 GO:0006166 GO:0006167 GO:0006169 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009167 GO:0009168 GO:0009259 GO:0009260 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042278 GO:0042451 GO:0042455 GO:0043094 GO:0043101 GO:0043167 GO:0043169 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046033 GO:0046085 GO:0046086 GO:0046128 GO:0046129 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 map00230 map01100

Pfam Domains

Protein Families

PfkB

Protein Analysis

391

Amino Acids

42.97

Weight (kDa)

5.6

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PfkB	PF00294	75 - 384	6.3e-74	pfkB family carbohydrate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002092)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09820 AT3G09820 AT5G03300 AT5G03300 AT5G03300
fragaria_vesca	FvH4_6g16080 FvH4_6g16090 FvH4_6g16090 FvH4_7g19110
malus_domestica	MD01G1106200.v1.1 MD07G1172600.v1.1 MD12G1116000.v1.1
prunus_persica	Prupe.2G211700_v2.0.a1 Prupe.6G235100_v2.0.a1
pyrus_communis	pycom01g13290 pycom04g09090 pycom07g16710 pycom12g11550 pycom14g07710
rosa_chinensis	RchiOBHm_Chr1g0363001 RchiOBHm_Chr3g0469911 RchiOBHm_Chr3g0469921
rosa_laevigata	RLG00000024312 RLG00000024313 RLG00000027603
rosa_multiflora	Rmu_co8309403.1_g000001 Rmu_sc0000174.1_g000004 Rmu_sc0008730.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293560 Rroxscaffold_6G00411370
rosa_rugosa	Rorug01G0303400 Rorug03G0105500 Rorug03G0105600
rosa_samantha	Rh1AG312400 Rh1CG292600 Rh1DG306400 Rh3AG154400 Rh3BG178500 Rh3CG169100 Rh3DG196600 Rh3DG196700
rosa_wichuraiana	Rw1G027690 Rw3G014540 Rw3G014550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AarI	CACCTGC	1 cut(s)	285
Acc36I	ACCTGC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	935
AcsI	RAATTY	4 cut(s)	162, 218, 317, 343
AdeI	CACNNNGTG	1 cut(s)	107
AfaI	GTAC	3 cut(s)	155, 448, 468
AfiI	CCNNNNNNNGG	1 cut(s)	828
AflIII	ACRYGT	1 cut(s)	503
AgsI	TTSAA	6 cut(s)	348, 586, 674, 754, 1070, 1085
AhlI	ACTAGT	1 cut(s)	389
AjiI	CACGTC	1 cut(s)	760
AjnI	CCWGG	2 cut(s)	379, 827
AluBI	AGCT	7 cut(s)	115, 557, 815, 1009, 1028, 1063, 1100
AluI	AGCT	7 cut(s)	115, 557, 815, 1009, 1028, 1063, 1100
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	4 cut(s)	663, 800, 839, 1062
AlwI	GGATC	1 cut(s)	935
AlwNI	CAGNNNCTG	1 cut(s)	944
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	2 cut(s)	299, 557
ApoI	RAATTY	4 cut(s)	162, 218, 317, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
Asp700I	GAANNNNTTC	2 cut(s)	626, 823
AspS9I	GGNCC	1 cut(s)	603
AsuHPI	GGTGA	4 cut(s)	29, 35, 539, 982
BbsI	GAAGAC	2 cut(s)	703, 1092
Bbv12I	GWGCWC	1 cut(s)	112
BbvCI	CCTCAGC	2 cut(s)	264, 957
BbvI	GCAGC	2 cut(s)	286, 544
BccI	CCATC	1 cut(s)	169
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 281, 315
BciT130I	CCWGG	2 cut(s)	381, 829
BcoDI	GTCTC	4 cut(s)	663, 800, 839, 1062
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	2 cut(s)	390, 816
BfuAI	ACCTGC	1 cut(s)	285
BisI	GCNGC	2 cut(s)	300, 558
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	2 cut(s)	301, 559
Bme1390I	CCNGG	2 cut(s)	381, 829
BmgBI	CACGTC	1 cut(s)	760
BmgT120I	GGNCC	1 cut(s)	603
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	381, 829
BmrI	ACTGGG	2 cut(s)	355, 877
BmsI	GCATC	5 cut(s)	357, 392, 905, 1024, 1121
BmuI	ACTGGG	2 cut(s)	355, 877
BpiI	GAAGAC	2 cut(s)	703, 1092
BpmI	CTGGAG	2 cut(s)	348, 645
Bpu10I	CCTNAGC	2 cut(s)	264, 957
Bpu1102I	GCTNAGC	1 cut(s)	111
BsaJI	CCNNGG	3 cut(s)	303, 606, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	643, 673
Bsc4I	CCNNNNNNNGG	1 cut(s)	828
Bse1I	ACTGG	2 cut(s)	361, 883
Bse3DI	GCAATG	3 cut(s)	321, 633, 951
BseBI	CCWGG	2 cut(s)	381, 829
BseDI	CCNNGG	3 cut(s)	303, 606, 828
BseGI	GGATG	7 cut(s)	180, 372, 407, 487, 1039, 1112, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	828
BseMI	GCAATG	3 cut(s)	321, 633, 951
BseMII	CTCAG	5 cut(s)	125, 255, 567, 948, 1073
BseNI	ACTGG	2 cut(s)	361, 883
BseRI	GAGGAG	2 cut(s)	443, 875
BseXI	GCAGC	2 cut(s)	286, 544
BseYI	CCCAGC	2 cut(s)	840, 1028
BsgI	GTGCAG	2 cut(s)	528, 782
BshFI	GGCC	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	112
BsiWI	CGTACG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	916
BslI	CCNNNNNNNGG	1 cut(s)	828
BsmAI	GTCTC	4 cut(s)	663, 800, 839, 1062
BsmFI	GGGAC	1 cut(s)	916
BsnI	GGCC	1 cut(s)	605
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp1407I	TGTACA	2 cut(s)	446, 466
Bsp143I	GATC	1 cut(s)	940
Bsp1720I	GCTNAGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	5 cut(s)	124, 256, 568, 949, 1072
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	935
BsrDI	GCAATG	3 cut(s)	321, 633, 951
BsrGI	TGTACA	2 cut(s)	446, 466
BsrI	ACTGG	2 cut(s)	361, 883
BssECI	CCNNGG	3 cut(s)	303, 606, 828
BssMI	GATC	1 cut(s)	940
BssT1I	CCWWGG	2 cut(s)	303, 606
Bst2UI	CCWGG	2 cut(s)	381, 829
Bst4CI	ACNGT	5 cut(s)	566, 655, 780, 922, 1091
BstAUI	TGTACA	2 cut(s)	446, 466
BstDEI	CTNAG	5 cut(s)	111, 264, 576, 957, 1059
BstENI	CCTNNNNNAGG	1 cut(s)	826
BstF5I	GGATG	7 cut(s)	180, 372, 407, 487, 1039, 1112, 1125
BstKTI	GATC	1 cut(s)	943
BstMAI	GTCTC	4 cut(s)	663, 800, 839, 1062
BstMBI	GATC	1 cut(s)	940
BstMWI	GCNNNNNNNGC	5 cut(s)	260, 332, 586, 689, 1034
BstNI	CCWGG	2 cut(s)	381, 829
BstNSI	RCATGY	2 cut(s)	507, 692
BstSCI	CCNGG	2 cut(s)	379, 827
BstV1I	GCAGC	2 cut(s)	286, 544
BstV2I	GAAGAC	2 cut(s)	703, 1092
BstX2I	RGATCY	1 cut(s)	940
BstXI	CCANNNNNNTGG	2 cut(s)	380, 600
BstYI	RGATCY	1 cut(s)	940
BsuRI	GGCC	1 cut(s)	605
BtrI	CACGTC	1 cut(s)	760
BtsCI	GGATG	7 cut(s)	180, 372, 407, 487, 1039, 1112, 1125
BtsI	GCAGTG	1 cut(s)	516
BtsIMutI	CAGTG	2 cut(s)	368, 516
BveI	ACCTGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	944
CciI	TCATGA	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	603
Csp6I	GTAC	3 cut(s)	154, 447, 467
CviAII	CATG	6 cut(s)	283, 504, 689, 715, 784, 836
CviQI	GTAC	3 cut(s)	154, 447, 467
DdeI	CTNAG	5 cut(s)	111, 264, 576, 957, 1059
DpnI	GATC	1 cut(s)	942
DpnII	GATC	1 cut(s)	940
DraIII	CACNNNGTG	1 cut(s)	107
Eco130I	CCWWGG	2 cut(s)	303, 606
EcoNI	CCTNNNNNAGG	1 cut(s)	826
EcoRI	GAATTC	3 cut(s)	162, 218, 317
EcoRII	CCWGG	2 cut(s)	379, 827
EcoT14I	CCWWGG	2 cut(s)	303, 606
EcoT22I	ATGCAT	3 cut(s)	407, 1039, 1114
ErhI	CCWWGG	2 cut(s)	303, 606
FaeI	CATG	6 cut(s)	286, 507, 692, 718, 787, 839
FaqI	GGGAC	1 cut(s)	916
FatI	CATG	6 cut(s)	282, 503, 688, 714, 783, 835
FauNDI	CATATG	1 cut(s)	740
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	300, 558
FokI	GGATG	7 cut(s)	187, 379, 414, 494, 1046, 1099, 1112
Fsp4HI	GCNGC	2 cut(s)	300, 558
FspBI	CTAG	2 cut(s)	390, 816
GluI	GCNGC	2 cut(s)	300, 558
GsaI	CCCAGC	2 cut(s)	844, 1032
GsuI	CTGGAG	2 cut(s)	348, 645
HaeIII	GGCC	1 cut(s)	605
Hin1II	CATG	6 cut(s)	286, 507, 692, 718, 787, 839
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	665
HphI	GGTGA	4 cut(s)	29, 35, 539, 982
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	577
Hpy188III	TCNNGA	5 cut(s)	191, 223, 662, 715, 1070
Hpy8I	GTNNAC	1 cut(s)	211
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	3 cut(s)	197, 406, 961
HpyCH4III	ACNGT	5 cut(s)	566, 655, 780, 922, 1091
HpyCH4IV	ACGT	3 cut(s)	21, 312, 759
HpyF10VI	GCNNNNNNNGC	5 cut(s)	260, 332, 586, 689, 1034
HpyF3I	CTNAG	5 cut(s)	111, 264, 576, 957, 1059
HpySE526I	ACGT	3 cut(s)	21, 312, 759
Hsp92II	CATG	6 cut(s)	286, 507, 692, 718, 787, 839
Kzo9I	GATC	1 cut(s)	940
LmnI	GCTCC	5 cut(s)	375, 496, 736, 935, 1025
Lsp1109I	GCAGC	2 cut(s)	286, 544
LweI	GCATC	5 cut(s)	357, 392, 905, 1024, 1121
MaeI	CTAG	2 cut(s)	390, 816
MaeII	ACGT	3 cut(s)	21, 312, 759
MaeIII	GTNAC	4 cut(s)	17, 26, 392, 993
MalI	GATC	1 cut(s)	942
MboI	GATC	1 cut(s)	940
MboII	GAAGA	5 cut(s)	46, 448, 637, 703, 1097
MflI	RGATCY	1 cut(s)	940
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	9 cut(s)	144, 162, 218, 293, 317, 343, 547, 598, 669
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	2 cut(s)	518, 1024
Mph1103I	ATGCAT	3 cut(s)	407, 1039, 1114
MroXI	GAANNNNTTC	2 cut(s)	626, 823
MseI	TTAA	2 cut(s)	462, 873
MspA1I	CMGCKG	2 cut(s)	557, 1063
MspR9I	CCNGG	2 cut(s)	381, 829
MvaI	CCWGG	2 cut(s)	381, 829
MwoI	GCNNNNNNNGC	5 cut(s)	260, 332, 586, 689, 1034
NdeI	CATATG	1 cut(s)	740
NdeII	GATC	1 cut(s)	940
NlaIII	CATG	6 cut(s)	286, 507, 692, 718, 787, 839
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	2 cut(s)	17, 26
NsiI	ATGCAT	3 cut(s)	407, 1039, 1114
NspI	RCATGY	2 cut(s)	507, 692
PagI	TCATGA	1 cut(s)	714
PaqCI	CACCTGC	1 cut(s)	285
PciI	ACATGT	1 cut(s)	503
PdmI	GAANNNNTTC	2 cut(s)	626, 823
Pfl23II	CGTACG	1 cut(s)	153
PkrI	GCNGC	2 cut(s)	301, 559
PleI	GAGTC	1 cut(s)	673
PpsI	GAGTC	1 cut(s)	673
PscI	ACATGT	1 cut(s)	503
PsiI	TTATAA	1 cut(s)	570
Psp6I	CCWGG	2 cut(s)	379, 827
PspFI	CCCAGC	2 cut(s)	840, 1028
PspGI	CCWGG	2 cut(s)	379, 827
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	492
PspPI	GGNCC	1 cut(s)	603
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	1 cut(s)	940
PvuII	CAGCTG	2 cut(s)	557, 1063
RsaI	GTAC	3 cut(s)	155, 448, 468
RsaNI	GTAC	3 cut(s)	154, 447, 467
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	2 cut(s)	462, 873
SatI	GCNGC	2 cut(s)	300, 558
Sau3AI	GATC	1 cut(s)	940
Sau96I	GGNCC	1 cut(s)	603
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	2 cut(s)	381, 829
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	5 cut(s)	357, 392, 905, 1024, 1121
SpeI	ACTAGT	1 cut(s)	389
Sse9I	AATT	9 cut(s)	144, 162, 218, 293, 317, 343, 547, 598, 669
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	2 cut(s)	390, 816
StyD4I	CCNGG	2 cut(s)	379, 827
StyI	CCWWGG	2 cut(s)	303, 606
TaaI	ACNGT	5 cut(s)	566, 655, 780, 922, 1091
TaiI	ACGT	3 cut(s)	24, 315, 762
TaqI	TCGA	2 cut(s)	192, 210
TasI	AATT	9 cut(s)	144, 162, 218, 293, 317, 343, 547, 598, 669
TatI	WGTACW	2 cut(s)	446, 466
Tru1I	TTAA	2 cut(s)	462, 873
Tru9I	TTAA	2 cut(s)	462, 873
TscAI	CASTG	2 cut(s)	368, 516
TseFI	GTSAC	2 cut(s)	17, 26
TseI	GCWGC	2 cut(s)	299, 557
Tsp45I	GTSAC	2 cut(s)	17, 26
TspDTI	ATGAA	9 cut(s)	231, 310, 449, 498, 703, 727, 734, 772, 824
TspRI	CASTG	2 cut(s)	368, 516
XagI	CCTNNNNNAGG	1 cut(s)	826
XapI	RAATTY	4 cut(s)	162, 218, 317, 343
XceI	RCATGY	2 cut(s)	507, 692
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	2 cut(s)	626, 823
XspI	CTAG	2 cut(s)	390, 816
Zsp2I	ATGCAT	3 cut(s)	407, 1039, 1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.