FvH4_6g18940

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008873
Physical Location & Seq
Reverse (-)
12524863 .. 12525853
991 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18940.t1

Sequence Viewer

Length: 795 bp
ATGGAATGTTTGGAGGAGATGGTGAAACAAGGGTGTGAGCCGAATGTGTTTACTTACAATGCGGTGATTCATGGGTTTTGTTTGAGTGGGAATGTTAAAGAGGCGAAGAGGATGATGACAAAGATGAGGTTGAACGGTGTGAAGGACGATATAGCAACGCATATGAAGATGGCCATACTTGGGATGAAACTAGATGTAAAAGCGTATGGAATTGTTGTCAATGAGTATTGTAAGATGAAAGAACCGGATGTGGCAATTTCACTTCTAATGGAAATGAGGACGAGAGGCCTAAAGCCAAGTGTTTCGAGCTTTAATGCAGTGCTGAGTGTTTTTGTTGAAAATGGGGAGCTTGAAAGAGCCATTAATCTTGTCAAGCAAATGCCTCATCAAATGGGTTGCTTTCCCAATTTCTTTTCATATAACTCAGTGATATGTAGTCTTTGTAATGTGAGAGGTAGGATGGGGGAAGTTGAAGAACTTATCCGTGACATGCTTAGAAATGGTCATTCTCTTGATACCACCCTCTGTAGTTGCTTGATCAAAGGTTATTGTGAGGGTGGTGATTTGCAAAGCACAATGCAGGTTTTCTGTGACGCGCTTGAACAGAGTCACGTTATTAATTTGGAGAGTTTTTCTGTTTTTGTCAAAGAGTTATGCGCCAAAGGGAAGGCTGTTGAGGCTGAGAGGATGTTTGAGGATATGCATAAAAGATGCAGTGTTGCCCATGTAGATAGTTACAGAAGAGTGTTAGATGATCATTTGTGTTTGTCTAGGAAAAGAATGGAGGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

265

Amino Acids

29.87

Weight (kDa)

6.7

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 2 - 27 3.3e-08 PPR repeat family
PPR_3 PF13812 4 - 49 4.4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 11 - 43 1.1e-13 PPR repeat
PPR_2 PF13041 14 - 54 8.5e-09 PPR repeat family
PPR PF01535 17 - 47 9.6e-07 PPR repeat
PPR_3 PF13812 56 - 114 4.5e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 65 - 105 8.6e-07 PPR repeat family
TPR_24 PF23276 78 - 196 3.1e-07 Fungal tetratrico peptide repeats
PPR_3 PF13812 88 - 144 1.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 99 - 149 8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 571
AccII CGCG 1 cut(s) 596
AciI CCGC 1 cut(s) 62
AcoI YGGCCR 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 5 cut(s) 133, 338, 353, 473, 602
AluBI AGCT 2 cut(s) 309, 349
AluI AGCT 2 cut(s) 309, 349
AoxI GGCC 2 cut(s) 171, 286
AseI ATTAAT 2 cut(s) 363, 618
AspLEI GCGC 2 cut(s) 598, 659
AsuHPI GGTGA 3 cut(s) 34, 76, 572
BalI TGGCCA 1 cut(s) 173
BccI CCATC 3 cut(s) 13, 163, 454
BclI TGATCA 2 cut(s) 537, 754
BfaI CTAG 2 cut(s) 191, 771
BfmI CTRYAG 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 571
BmsI GCATC 1 cut(s) 701
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 1 cut(s) 180
BseGI GGATG 5 cut(s) 117, 189, 253, 465, 693
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 3 cut(s) 314, 438, 672
BseRI GAGGAG 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 596
BshFI GGCC 2 cut(s) 173, 288
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 180
BsnI GGCC 2 cut(s) 173, 288
Bsp143I GATC 2 cut(s) 537, 754
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 173, 288
BspCNI CTCAG 3 cut(s) 315, 437, 673
BspFNI CGCG 1 cut(s) 596
BspMI ACCTGC 1 cut(s) 571
BssMI GATC 2 cut(s) 537, 754
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 101, 736
BstDEI CTNAG 4 cut(s) 323, 424, 494, 681
BstF5I GGATG 5 cut(s) 117, 189, 253, 465, 693
BstFNI CGCG 1 cut(s) 596
BstHHI GCGC 2 cut(s) 598, 659
BstKTI GATC 2 cut(s) 540, 757
BstMBI GATC 2 cut(s) 537, 754
BstMWI GCNNNNNNNGC 1 cut(s) 677
BstNSI RCATGY 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 526
BstUI CGCG 1 cut(s) 596
BsuRI GGCC 2 cut(s) 173, 288
BtsCI GGATG 5 cut(s) 117, 189, 253, 465, 693
BtsI GCAGTG 2 cut(s) 324, 721
BtsIMutI CAGTG 3 cut(s) 324, 432, 721
BveI ACCTGC 1 cut(s) 571
CfoI GCGC 2 cut(s) 598, 659
CseI GACGC 1 cut(s) 602
CviAII CATG 4 cut(s) 71, 490, 725, 792
DdeI CTNAG 4 cut(s) 323, 424, 494, 681
DpnI GATC 2 cut(s) 539, 756
DpnII GATC 2 cut(s) 537, 754
EaeI YGGCCR 1 cut(s) 171
Eam1104I CTCTTC 2 cut(s) 101, 736
EarI CTCTTC 2 cut(s) 101, 736
Eco147I AGGCCT 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 705
FaeI CATG 4 cut(s) 74, 493, 728, 795
FatI CATG 4 cut(s) 70, 489, 724, 791
FauNDI CATATG 1 cut(s) 162
FbaI TGATCA 2 cut(s) 537, 754
FokI GGATG 5 cut(s) 124, 196, 260, 472, 700
FspBI CTAG 2 cut(s) 191, 771
GlaI GCGC 2 cut(s) 597, 658
HaeIII GGCC 2 cut(s) 173, 288
HapII CCGG 1 cut(s) 245
HgaI GACGC 1 cut(s) 602
HhaI GCGC 2 cut(s) 598, 659
Hin1II CATG 4 cut(s) 74, 493, 728, 795
Hin6I GCGC 2 cut(s) 596, 657
HinP1I GCGC 2 cut(s) 596, 657
HinfI GANTC 2 cut(s) 67, 607
HpaII CCGG 1 cut(s) 245
HphI GGTGA 3 cut(s) 34, 76, 572
Hpy166II GTNNAC 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 2 cut(s) 136, 661
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 5 cut(s) 317, 568, 580, 703, 714
HpyF10VI GCNNNNNNNGC 1 cut(s) 677
HpyF3I CTNAG 4 cut(s) 323, 424, 494, 681
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 4 cut(s) 74, 493, 728, 795
HspAI GCGC 2 cut(s) 596, 657
Ksp22I TGATCA 2 cut(s) 537, 754
Kzo9I GATC 2 cut(s) 537, 754
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 2 cut(s) 258, 566
LweI GCATC 1 cut(s) 701
MaeI CTAG 2 cut(s) 191, 771
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 4 cut(s) 485, 590, 608, 734
MalI GATC 2 cut(s) 539, 756
MboI GATC 2 cut(s) 537, 754
MboII GAAGA 4 cut(s) 118, 178, 485, 753
MlsI TGGCCA 1 cut(s) 173
MluCI AATT 4 cut(s) 210, 255, 406, 619
MluNI TGGCCA 1 cut(s) 173
MlyI GAGTC 1 cut(s) 616
Mox20I TGGCCA 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 705
MscI TGGCCA 1 cut(s) 173
MseI TTAA 4 cut(s) 96, 312, 363, 618
Msp20I TGGCCA 1 cut(s) 173
MspI CCGG 1 cut(s) 245
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 1 cut(s) 677
NdeI CATATG 1 cut(s) 162
NdeII GATC 2 cut(s) 537, 754
NlaIII CATG 4 cut(s) 74, 493, 728, 795
NmuCI GTSAC 3 cut(s) 485, 590, 608
NsiI ATGCAT 1 cut(s) 705
NspI RCATGY 1 cut(s) 493
PceI AGGCCT 1 cut(s) 288
PfeI GAWTC 1 cut(s) 67
PleI GAGTC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 615
PshBI ATTAAT 2 cut(s) 363, 618
SaqAI TTAA 4 cut(s) 96, 312, 363, 618
Sau3AI GATC 2 cut(s) 537, 754
SchI GAGTC 1 cut(s) 616
SetI ASST 7 cut(s) 131, 311, 351, 457, 547, 585, 615
SfaNI GCATC 1 cut(s) 701
SfcI CTRYAG 1 cut(s) 526
Sse9I AATT 4 cut(s) 210, 255, 406, 619
SseBI AGGCCT 1 cut(s) 288
SsiI CCGC 1 cut(s) 62
SspMI CTAG 2 cut(s) 191, 771
StuI AGGCCT 1 cut(s) 288
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 615
TaqI TCGA 1 cut(s) 305
TasI AATT 4 cut(s) 210, 255, 406, 619
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 4 cut(s) 96, 312, 363, 618
Tru9I TTAA 4 cut(s) 96, 312, 363, 618
TscAI CASTG 3 cut(s) 324, 432, 721
TseFI GTSAC 3 cut(s) 485, 590, 608
Tsp45I GTSAC 3 cut(s) 485, 590, 608
TspDTI ATGAA 5 cut(s) 59, 179, 200, 251, 405
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 3 cut(s) 324, 432, 721
VspI ATTAAT 2 cut(s) 363, 618
XceI RCATGY 1 cut(s) 493
XspI CTAG 2 cut(s) 191, 771
Zsp2I ATGCAT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.