Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008873

Physical Location & Seq

Genomic Coordinates Forward (+)

37927732 .. 37928079

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG318900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTGGCTATGGCATTGTCTATTTTGTTTTTTATTCTGTGTAATTAACACCAGTGTTGTGCTTATAGAGAAGGAGAACTTGTGTCTATATGGACTGCCAAATGAGGCATGGGAAGTTAACCTTCCTGTTGAGGAGGTGCCTCCTGAGCTTCCTGAACCAGCATTAGGTATAAACTTTGCTAGAGATGGGATGGCAGAGAAGGACTGGTTGTCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCACGCTTTGGGTTTGGCAAAAATGAAAGGTACGTACTACTTTTCCCTTGCCACACGCACATAACAATTTGCATCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006417 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0033554 GO:0034248 GO:0034250 GO:0045727 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0097159 GO:0104004 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

115

Amino Acids

13.22

Weight (kDa)

4.85

Isoelectric Point (pI)

49.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	23 - 103	1.5e-41	Alfin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008873)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18940 FvH4_6g18941
malus_domestica	MD08G1069200.v1.1 MD08G1069300.v1.1 MD15G1052800.v1.1
prunus_persica	Prupe.1G406700_v2.0.a1
pyrus_communis	pycom08g05700 pycom08g05710 pycom15g05050
rosa_chinensis	RchiOBHm_Chr6g0311521
rosa_laevigata	RLG00000010397
rosa_multiflora	Rmu_co8085934.1_g000001 Rmu_sc0028020.1_g000001 Rmu_sc0035116.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157540
rosa_rugosa	Rorug06G0389400
rosa_samantha	Rh6AG504200 Rh6AG504300 Rh6BG514900 Rh6CG520700 Rh6DG506700 Rh7DG318900
rosa_wichuraiana	Rw6G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AfaI	GTAC	2 cut(s)	299, 303
AfiI	CCNNNNNNNGG	1 cut(s)	164
AhdI	GACNNNNNGTC	1 cut(s)	208
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	271
Alw44I	GTGCAC	1 cut(s)	267
ApaLI	GTGCAC	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	271
BccI	CCATC	2 cut(s)	179, 184
BfaI	CTAG	1 cut(s)	180
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	301
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	3 cut(s)	51, 209, 343
BseGI	GGATG	2 cut(s)	195, 339
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	3 cut(s)	51, 209, 343
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	271
BshNI	GGYRCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	271
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	271
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	51, 209, 343
Bst4CI	ACNGT	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	246, 271
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	195, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	271
BstSNI	TACGTA	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	195, 339
BtsIMutI	CAGTG	2 cut(s)	58, 235
Cac8I	GCNNGC	2 cut(s)	246, 271
Csp6I	GTAC	2 cut(s)	298, 302
CviAII	CATG	2 cut(s)	108, 237
CviJI	RGCY	2 cut(s)	7, 148
CviKI_1	RGCY	2 cut(s)	7, 148
CviQI	GTAC	2 cut(s)	298, 302
DdeI	CTNAG	1 cut(s)	144
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1105I	GACNNNNNGTC	1 cut(s)	208
Eco105I	TACGTA	1 cut(s)	301
FaeI	CATG	2 cut(s)	111, 240
FaiI	YATR	8 cut(s)	10, 65, 88, 90, 109, 170, 238, 329
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 105, 137
FatI	CATG	2 cut(s)	107, 236
FokI	GGATG	2 cut(s)	202, 326
FspBI	CTAG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	111, 240
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	233
HpaI	GTTAAC	1 cut(s)	118
Hpy166II	GTNNAC	3 cut(s)	118, 226, 269
Hpy188III	TCNNGA	2 cut(s)	143, 152
Hpy8I	GTNNAC	3 cut(s)	118, 226, 269
HpyAV	CCTTC	3 cut(s)	64, 131, 193
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	221, 254, 269, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	111, 240
KspAI	GTTAAC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	64, 138, 156, 165, 171, 190, 200
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	2 cut(s)	42, 333
MnlI	CCTC	4 cut(s)	97, 124, 127, 150
MseI	TTAA	2 cut(s)	45, 117
Mva1269I	GAATGC	1 cut(s)	254
MwoI	GCNNNNNNNGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	111, 240
NlaIV	GGNNCC	1 cut(s)	138
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	233
Ppu21I	YACGTR	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	138
RsaI	GTAC	2 cut(s)	299, 303
RsaNI	GTAC	2 cut(s)	298, 302
SaqAI	TTAA	2 cut(s)	45, 117
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	123, 138, 150, 169, 299, 303
SnaBI	TACGTA	1 cut(s)	301
Sse9I	AATT	2 cut(s)	42, 333
SspMI	CTAG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	303
TasI	AATT	2 cut(s)	42, 333
TfiI	GAWTC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	45, 117
Tru9I	TTAA	2 cut(s)	45, 117
TscAI	CASTG	2 cut(s)	58, 235
TspDTI	ATGAA	2 cut(s)	225, 306
TspRI	CASTG	2 cut(s)	58, 235
VneI	GTGCAC	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	105
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.