Rroxscaffold_7G00157540

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008873
Physical Location & Seq
Forward (+)
1356322 .. 1357983
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157540.1

Sequence Viewer

Length: 1662 bp
ATGGCTGCACCAGCTAGAGCCCTAAACCCATTTCACACCTCTACCAATCACTCTCAAGTGACCTTCATAACCTCCCTTCTGCAAACCCTAAACCCACAGACACCTAACCCCTCAAACCTCAGCTCAGCCCCTCTTAACCAATTCTCACCTCACCTAAACCCAACCCTAGTTATCCAAGTCCTCCACAACCAGACCAATCCCTACCACGCCCTCTTCTTCTTCAAATGGGCATCAAACCCTGACCCTAATCCCAACAACTACTCCCACACCTTCAAATGCTACTCGGCCATCACCGACATCCTCCTCTCCCACTCCCTCTTCTCCTCCGCCTCATCACTCCTCCAAGAATCCAATCACCTCTCTGATTTTCTGATCGGCAAGTTCATCACAGCTCACGGCCGCCGCGGCGGTGTGAGGGCCGCCATTTATTGGTTTCACAAGGCGAAAGTGATTGAGAATGGGAGGTGCTTGTTTTCTTACAATGCAATTCTGGGTGTGTTGGTTAGGGCAAATAGGATTGGTTTAGCTGAGTCAATTTATGATCAGATTTTCAAGGAAGGTCTGGCGAAACCGGATGCGTCGACTTATACCGTAATGATTAGAGGGTTTTGTAAAGTGGGTGAGATTGAGAATGCACAGAAGGTGTTCGATCAAATGACTTGTGAGCCGAATTTGATTACTTACAATACTATGATTCATGGGTTCTGCAAGAAGGGTGAGGTTGATAGTGCTAGGAGAGTTTTGGGTCAGATGATGGAGGGTAAGGATTGCTTGCCTGATACGGTAACTTATACAACTTTGATTGATGGGTACAGTAAGAAAGGTGAGTTGGGCGAGGCAATGAAGTGTATGGATGAGATGGTGAAACAGGGTTGTGAGCCTAATGTGTTGACTTACAATGCGGTGATTCATGGTTTTTGTTTGAGTGGGAATGTTAATGGGGCAAAGAGGATGATGACGAGGATGAGGTTGAATGGTGTGAAGGATGATATAGCAACGCATACGAGTATATTGAAAGGGCTTTGCATTGCGGGGAAGGCTGATGAAGCTGTTGAGCATCTTAAAGAGATGGCCAGACTTGGGATGAAACTGGATGTGAAAGCGTATGGAATTGTTGTCAATGAGTATTGTAAGATGAAAGAACCGGATGGAGCAATTTTGCTTTTAATGGAAATGAGAATGAGAGCCCTGAGGCCAAGTGTTTCGAGCTTTAATGCAGTGCTGAGTGTTCTTCTTGAAAATGGGGAGCTCGAAAGAGCCATTAATCTTGTAAAGCAAATGCCACAAATGGGTTGCTTTCCCAATTTCTTTTCATACAACTCAGTGATATGTAGTCTTTGTAATGTGAGAGGTAGAATGGGGGAAGTTGAAGGGCTTATCCATGACATGCTTCGAAATGGTCATGCCCTTGATGCCACGCTCTGTAGTTGCTTGGTCAAAGGTTATTGCGAGGATGGTGATTTGAAAAGCGCAATGCAGGTTTTCTGTGACGCACTTGATCAGAGGTACATTATTAGTTTGGAGAGCTTTTCAGTTTTCGTCAAAGAGTTATGCGCCAAGGGGAAGGCTGTTGAGGCTGAGAGGATGTTTGAGGATATGTGTAAAAGATGCAGTGTGGTTCATATAGATATTTACAGAAAGGTGTTAGATGATTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

553

Amino Acids

61.67

Weight (kDa)

7.76

Isoelectric Point (pI)

23.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 157 - 205 2.6e-10 PPR repeat family
PPR_3 PF13812 190 - 234 3e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 190 - 220 2.2e-10 PPR repeat
PPR_2 PF13041 191 - 220 1.2e-06 PPR repeat family
PPR PF01535 194 - 220 1.1e-06 PPR repeat
PPR_1 PF12854 221 - 251 5.6e-14 PPR repeat
PPR_2 PF13041 223 - 270 9.1e-15 PPR repeat family
PPR PF01535 226 - 253 2.3e-07 PPR repeat
PPR_3 PF13812 251 - 304 9.4e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 255 - 288 3e-11 PPR repeat
PPR_2 PF13041 259 - 307 5.5e-20 PPR repeat family
PPR PF01535 262 - 292 2.7e-09 PPR repeat
PPR_1 PF12854 291 - 323 4.8e-11 PPR repeat
PPR_2 PF13041 295 - 342 2.1e-10 PPR repeat family
TPR_24 PF23276 298 - 385 2.1e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 325 - 357 5.8e-06 PPR repeat
PPR_2 PF13041 330 - 378 9.8e-08 PPR repeat family
PPR_3 PF13812 388 - 443 1.4e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 399 - 448 2.1e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1468
AccB7I CCANNNNNTGG 1 cut(s) 429
AccI GTMKAC 1 cut(s) 581
AccII CGCG 1 cut(s) 405
AciI CCGC 8 cut(s) 327, 400, 403, 405, 408, 420, 902, 1031
AcoI YGGCCR 3 cut(s) 285, 397, 1071
AcsI RAATTY 1 cut(s) 670
AfaI GTAC 2 cut(s) 812, 1508
AfiI CCNNNNNNNGG 3 cut(s) 429, 1080, 1289
AgsI TTSAA 8 cut(s) 223, 274, 553, 973, 1015, 1238, 1370, 1465
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
AluBI AGCT 8 cut(s) 14, 123, 392, 527, 1049, 1209, 1249, 1527
AluI AGCT 8 cut(s) 14, 123, 392, 527, 1049, 1209, 1249, 1527
Alw21I GWGCWC 1 cut(s) 1251
AoxI GGCC 5 cut(s) 285, 397, 417, 1071, 1193
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 670
AseI ATTAAT 1 cut(s) 1263
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 2 cut(s) 1472, 1556
AspS9I GGNCC 1 cut(s) 417
AsuII TTCGAA 1 cut(s) 1393
AxyI CCTNAGG 1 cut(s) 1190
BalI TGGCCA 1 cut(s) 1073
BanII GRGCYC 3 cut(s) 22, 1189, 1251
Bbv12I GWGCWC 1 cut(s) 1251
BbvCI CCTCAGC 1 cut(s) 119
BccI CCATC 7 cut(s) 296, 748, 800, 853, 1063, 1142, 1448
BceAI ACGGC 1 cut(s) 412
BclI TGATCA 2 cut(s) 541, 1498
BfaI CTAG 3 cut(s) 15, 167, 732
BfmI CTRYAG 1 cut(s) 1423
BfuAI ACCTGC 1 cut(s) 1468
BglI GCCNNNNNGGC 1 cut(s) 405
BisI GCNGC 5 cut(s) 6, 400, 403, 406, 420
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 5 cut(s) 7, 401, 404, 407, 421
BmgT120I GGNCC 1 cut(s) 417
BmsI GCATC 5 cut(s) 239, 565, 1066, 1402, 1598
Bpu10I CCTNAGC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 1393
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 403, 1557
BsaWI WCCGGW 2 cut(s) 571, 1144
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 3 cut(s) 429, 1080, 1289
Bse1I ACTGG 1 cut(s) 1095
Bse21I CCTNAGG 1 cut(s) 1190
Bse3DI GCAATG 3 cut(s) 846, 1026, 1479
BseDI CCNNGG 2 cut(s) 403, 1557
BseLI CCNNNNNNNGG 3 cut(s) 429, 1080, 1289
BseMI GCAATG 3 cut(s) 846, 1026, 1479
BseMII CTCAG 7 cut(s) 133, 138, 519, 1181, 1214, 1335, 1569
BseNI ACTGG 1 cut(s) 1095
BseRI GAGGAG 3 cut(s) 293, 313, 329
BseX3I CGGCCG 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 405
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 5 cut(s) 287, 399, 419, 1073, 1195
BsiEI CGRYCG 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 1251
BsiSI CCGG 2 cut(s) 572, 1145
BslI CCNNNNNNNGG 3 cut(s) 429, 1080, 1289
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 5 cut(s) 287, 399, 419, 1073, 1195
Bsp119I TTCGAA 1 cut(s) 1393
Bsp1286I GDGCHC 3 cut(s) 22, 1189, 1251
Bsp143I GATC 4 cut(s) 372, 541, 649, 1498
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 8 cut(s) 327, 400, 403, 405, 408, 420, 902, 1031
BspANI GGCC 5 cut(s) 287, 399, 419, 1073, 1195
BspCNI CTCAG 7 cut(s) 132, 137, 520, 1182, 1215, 1334, 1570
BspFNI CGCG 1 cut(s) 405
BspMI ACCTGC 1 cut(s) 1468
BspT104I TTCGAA 1 cut(s) 1393
BsrDI GCAATG 3 cut(s) 846, 1026, 1479
BsrI ACTGG 1 cut(s) 1095
BssECI CCNNGG 2 cut(s) 403, 1557
BssMI GATC 4 cut(s) 372, 541, 649, 1498
BssT1I CCWWGG 1 cut(s) 1557
Bst4CI ACNGT 3 cut(s) 592, 784, 815
Bst6I CTCTTC 2 cut(s) 218, 323
BstBI TTCGAA 1 cut(s) 1393
BstC8I GCNNGC 1 cut(s) 773
BstDEI CTNAG 7 cut(s) 119, 124, 528, 1190, 1223, 1321, 1578
BstDSI CCRYGG 1 cut(s) 403
BstFNI CGCG 1 cut(s) 405
BstHHI GCGC 2 cut(s) 1472, 1556
BstKTI GATC 4 cut(s) 375, 544, 652, 1501
BstMBI GATC 4 cut(s) 372, 541, 649, 1498
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 6 cut(s) 11, 405, 1037, 1046, 1412, 1574
BstNSI RCATGY 1 cut(s) 1390
BstSFI CTRYAG 1 cut(s) 1423
BstUI CGCG 1 cut(s) 405
BstZI CGGCCG 1 cut(s) 397
Bsu36I CCTNAGG 1 cut(s) 1190
BsuRI GGCC 5 cut(s) 287, 399, 419, 1073, 1195
BtgI CCRYGG 1 cut(s) 403
BtsI GCAGTG 2 cut(s) 1224, 1618
BtsIMutI CAGTG 3 cut(s) 1224, 1329, 1618
BveI ACCTGC 1 cut(s) 1468
Cac8I GCNNGC 1 cut(s) 773
CfoI GCGC 2 cut(s) 1472, 1556
Cfr13I GGNCC 1 cut(s) 417
Cfr42I CCGCGG 1 cut(s) 406
CseI GACGC 2 cut(s) 567, 1499
Csp6I GTAC 2 cut(s) 811, 1507
CviAII CATG 5 cut(s) 698, 911, 1382, 1387, 1403
CviQI GTAC 2 cut(s) 811, 1507
DdeI CTNAG 7 cut(s) 119, 124, 528, 1190, 1223, 1321, 1578
DpnI GATC 4 cut(s) 374, 543, 651, 1500
DpnII GATC 4 cut(s) 372, 541, 649, 1498
EaeI YGGCCR 3 cut(s) 285, 397, 1071
EagI CGGCCG 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 218, 323
EarI CTCTTC 2 cut(s) 218, 323
EciI GGCGGA 1 cut(s) 316
Ecl136II GAGCTC 1 cut(s) 1249
EclXI CGGCCG 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 1557
Eco24I GRGCYC 3 cut(s) 22, 1189, 1251
Eco52I CGGCCG 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 1249
Eco81I CCTNAGG 1 cut(s) 1190
EcoICRI GAGCTC 1 cut(s) 1249
EcoT14I CCWWGG 1 cut(s) 1557
EcoT38I GRGCYC 3 cut(s) 22, 1189, 1251
ErhI CCWWGG 1 cut(s) 1557
FaeI CATG 5 cut(s) 701, 914, 1385, 1390, 1406
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FatI CATG 5 cut(s) 697, 910, 1381, 1386, 1402
FauI CCCGC 1 cut(s) 1024
FbaI TGATCA 2 cut(s) 541, 1498
FblI GTMKAC 1 cut(s) 581
Fnu4HI GCNGC 5 cut(s) 6, 400, 403, 406, 420
FriOI GRGCYC 3 cut(s) 22, 1189, 1251
Fsp4HI GCNGC 5 cut(s) 6, 400, 403, 406, 420
FspBI CTAG 3 cut(s) 15, 167, 732
GlaI GCGC 2 cut(s) 1471, 1555
GluI GCNGC 5 cut(s) 6, 400, 403, 406, 420
HaeIII GGCC 5 cut(s) 287, 399, 419, 1073, 1195
HapII CCGG 2 cut(s) 572, 1145
HgaI GACGC 2 cut(s) 567, 1499
HhaI GCGC 2 cut(s) 1472, 1556
Hin1II CATG 5 cut(s) 701, 914, 1385, 1390, 1406
Hin6I GCGC 2 cut(s) 1470, 1554
HinP1I GCGC 2 cut(s) 1470, 1554
HincII GTYRAC 2 cut(s) 582, 891
HindII GTYRAC 2 cut(s) 582, 891
HinfI GANTC 4 cut(s) 347, 530, 694, 907
HpaII CCGG 2 cut(s) 572, 1145
Hpy166II GTNNAC 2 cut(s) 582, 891
Hpy188I TCNGA 5 cut(s) 364, 372, 546, 750, 1503
Hpy188III TCNNGA 1 cut(s) 1235
Hpy8I GTNNAC 2 cut(s) 582, 891
Hpy99I CGWCG 1 cut(s) 583
HpyCH4III ACNGT 3 cut(s) 592, 784, 815
HpyCH4V TGCA 9 cut(s) 8, 82, 485, 635, 708, 1026, 1217, 1477, 1611
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 405, 1037, 1046, 1412, 1574
HpyF3I CTNAG 7 cut(s) 119, 124, 528, 1190, 1223, 1321, 1578
Hsp92II CATG 5 cut(s) 701, 914, 1385, 1390, 1406
HspAI GCGC 2 cut(s) 1470, 1554
Ksp22I TGATCA 2 cut(s) 541, 1498
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 4 cut(s) 372, 541, 649, 1498
LmnI GCTCC 2 cut(s) 1151, 1246
LweI GCATC 5 cut(s) 239, 565, 1066, 1402, 1598
MaeI CTAG 3 cut(s) 15, 167, 732
MaeIII GTNAC 3 cut(s) 58, 784, 1487
MalI GATC 4 cut(s) 374, 543, 651, 1500
MboI GATC 4 cut(s) 372, 541, 649, 1498
MboII GAAGA 5 cut(s) 205, 208, 211, 310, 1223
MhlI GDGCHC 3 cut(s) 22, 1189, 1251
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 7 cut(s) 140, 486, 534, 670, 1110, 1155, 1303
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 1 cut(s) 539
Mox20I TGGCCA 1 cut(s) 1073
MroXI GAANNNNTTC 1 cut(s) 644
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 6 cut(s) 135, 936, 1062, 1166, 1212, 1263
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 2 cut(s) 572, 1145
Mva1269I GAATGC 1 cut(s) 637
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 6 cut(s) 11, 405, 1037, 1046, 1412, 1574
NdeII GATC 4 cut(s) 372, 541, 649, 1498
NlaIII CATG 5 cut(s) 701, 914, 1385, 1390, 1406
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 58, 1487
NspI RCATGY 1 cut(s) 1390
NspV TTCGAA 1 cut(s) 1393
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 644
PfeI GAWTC 3 cut(s) 347, 694, 907
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 5 cut(s) 7, 401, 404, 407, 421
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PshBI ATTAAT 1 cut(s) 1263
Psp124BI GAGCTC 1 cut(s) 1251
PspPI GGNCC 1 cut(s) 417
RsaI GTAC 2 cut(s) 812, 1508
RsaNI GTAC 2 cut(s) 811, 1507
SacI GAGCTC 1 cut(s) 1251
SacII CCGCGG 1 cut(s) 406
SalI GTCGAC 1 cut(s) 580
SaqAI TTAA 6 cut(s) 135, 936, 1062, 1166, 1212, 1263
SatI GCNGC 5 cut(s) 6, 400, 403, 406, 420
Sau3AI GATC 4 cut(s) 372, 541, 649, 1498
Sau96I GGNCC 1 cut(s) 417
SchI GAGTC 1 cut(s) 539
SduI GDGCHC 3 cut(s) 22, 1189, 1251
SfaNI GCATC 5 cut(s) 239, 565, 1066, 1402, 1598
SfcI CTRYAG 1 cut(s) 1423
Sfr303I CCGCGG 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 1393
SgrBI CCGCGG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
Sse9I AATT 7 cut(s) 140, 486, 534, 670, 1110, 1155, 1303
SsiI CCGC 8 cut(s) 327, 400, 403, 405, 408, 420, 902, 1031
SspMI CTAG 3 cut(s) 15, 167, 732
SstI GAGCTC 1 cut(s) 1251
StyI CCWWGG 1 cut(s) 1557
TaaI ACNGT 3 cut(s) 592, 784, 815
TaqI TCGA 5 cut(s) 581, 648, 1205, 1251, 1393
TasI AATT 7 cut(s) 140, 486, 534, 670, 1110, 1155, 1303
TauI GCSGC 4 cut(s) 402, 405, 408, 422
TfiI GAWTC 3 cut(s) 347, 694, 907
Tru1I TTAA 6 cut(s) 135, 936, 1062, 1166, 1212, 1263
Tru9I TTAA 6 cut(s) 135, 936, 1062, 1166, 1212, 1263
TscAI CASTG 3 cut(s) 1224, 1329, 1618
TseFI GTSAC 2 cut(s) 58, 1487
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 58, 1487
TspRI CASTG 3 cut(s) 1224, 1329, 1618
Van91I CCANNNNNTGG 1 cut(s) 429
VspI ATTAAT 1 cut(s) 1263
XapI RAATTY 1 cut(s) 670
XceI RCATGY 1 cut(s) 1390
XmiI GTMKAC 1 cut(s) 581
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 3 cut(s) 15, 167, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.