RLG00000010397

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008873
Physical Location & Seq
Forward (+)
1342865 .. 1344921
2057 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010397

Sequence Viewer

Length: 1794 bp
ATGGCTGCACCAGCTAGAGCCCTAAACCCATTTCACACCTCTAGCAATCACTCTCAAGTGACCTTCATAACCTCCCTTCTGCAAACCCTAAACCCACAGACACCTAACCCCTCAAACCTCAGCTCAGCCCCTCTTAACCAATTCTCACATCACCTAAACCCAACCCTAGTTATCCAAGTCCTCCACAACCAGACCAATCCCTACCACGCCCTCTTCTTCTTCAAATGGGCATCAAACCCTGACCCTAATCCCAACAACTACTCCCACACCTTCAAATGCTACTCGGCCATCACTGACATCCTCCTCTCCCACTCCCTCTTCTCCTCCGCCTCATCACTCCTCCAAGAATCCAATAAGCTCTCTGATTTTCTGATCGGCAAGTTCATCACAGCTCACGGCCGCCGCGGCGGTGTGAGGGCCGCCATTGATTGGTTTCACAAGGCGAAAGTGATTGAGAATGGGAGGTGCTTGTTTTCTTACAATGCAATTCTGGGTGTGTTGGTTAGGGCAAATAGGATTGGTTTAGCTGAGTCAATTTATGATCAGATTTTCAAGGAAGGTCTGGTGAAACCGGATGCGTCGACTTATACCATAATGATTAGAGGGTTTTGTAAAGTGGGTGAGATTGAGAATGCACACAAGGTGTTCGACGAAATGACTTGTGACCCGAATTTGATTACTTACAATACTATGATTCATGGGTTCTGCAACAAGGGTGAGGTTGACAGTGCGAGGAGAGTTTTGGGTCAGATGATGCAGGGTAAGGATTGCTTGCCTGATACGGTAACTTATACAACTTTGATTGATGGGTACAGTAAGAAAGGTGAGTTGGGCGAGGCAATGAAGTGTATGGATGAGATGGTGAAACAGGGTTGTGAGCCTAATGTGTTGACTTACAATGCGGTAATTCATGGTTTTTGTTTGAGTGGGAATGTTAATGAGGCGAAGAGGATGATGACGAGGATGAGGTTGAATGGTGTGAAGGATGATATAGCGACGCATACGAGTATATTGAAAGGGCTTTGCTTTGCGGGGAAGGCTGATGAAGCTGTTGAGCATCTTAAAGAGATGGCCAGACTTGGGATGAAACTGGATGTGAAAGCATATGGAATTGTTGTCAATGAGTATTGTAAGATGAAAGAACCGGATGGAGCAATTTTGCTTTTAATGGAAATGAGAATGAGAGGCCTGAAGCCAAGTGTTTCGAGCTTTAATGCAGTGCTGAGTGTTCTTCTTGAAAATGGGGAGCTCGAAAGAGCCATTAATCTTGTAAAGCAAATGCCACATATGGGTTGCTTTCCCAATTTCTTTTCATACAACTCAGTGATATGTAGTCTTTGTAATGTGAGGGGTAGAATGGGGGAAGTTGAAGGGCTTATCCGTGACATGCTTCGAAATGGTCATGCCCTTGATGCCACGCTCTGTAGTTGCTTGGTCAAAGGTTATTGCGAGGATGGTGATTTGAGAAGCGCAATGCAGGTTTTCTGTGACGCACTTGATCAGAGGTATATTATTAGTTTGGAGAGCTTTTCAGTTTTCGTCAAAAAGTTATGCGCGAAGGGGAAGGCTGTTGAGGCTGAGAGGGTGTTTGAGGATATGTGTAAAAGATGCAGTGTGGTTCATATAGATATTTACAGAAAGAGAAGGAGAATCTTTGCCTGTATGGATTTCCAAGCGAGCAGTGGGAAGTTAATTTGCCCTGCAGAGGAGGTTCCGCCTGAGCTTCCAGAACCAACACTCGGTATCAATTTTGCCAGAGATGGGAAGCAAAAGACGGAGTGGTTATCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

598

Amino Acids

66.66

Weight (kDa)

8.22

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_long PF17177 134 - 251 3.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 157 - 205 7.1e-11 PPR repeat family
PPR_3 PF13812 189 - 235 2.2e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 189 - 220 1.8e-11 PPR repeat
PPR_2 PF13041 191 - 220 1.3e-07 PPR repeat family
PPR PF01535 194 - 220 2.4e-07 PPR repeat
PPR_1 PF12854 221 - 251 7.1e-13 PPR repeat
PPR_2 PF13041 223 - 271 1e-14 PPR repeat family
PPR PF01535 226 - 252 3e-06 PPR repeat
PPR_3 PF13812 250 - 304 8.5e-12 Pentatricopeptide repeat domain
PPR_1 PF12854 255 - 288 3.3e-11 PPR repeat
PPR_2 PF13041 259 - 307 6.1e-20 PPR repeat family
PPR PF01535 262 - 292 3e-09 PPR repeat
PPR_1 PF12854 291 - 323 3.1e-12 PPR repeat
PPR_2 PF13041 294 - 342 5.8e-12 PPR repeat family
TPR_24 PF23276 298 - 385 1.8e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 313 - 418 9e-06 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 325 - 357 4.3e-06 PPR repeat
PPR_2 PF13041 330 - 378 8.4e-08 PPR repeat family
PPR_3 PF13812 354 - 411 1.2e-06 Pentatricopeptide repeat domain
PPR_3 PF13812 388 - 443 2.1e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 399 - 448 4.2e-11 PPR repeat family
Alfin PF12165 564 - 597 3.7e-11 Alfin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1468
AccB7I CCANNNNNTGG 1 cut(s) 429
AccI GTMKAC 1 cut(s) 581
AccII CGCG 2 cut(s) 405, 1556
AciI CCGC 9 cut(s) 327, 400, 403, 405, 408, 420, 902, 1031, 1715
AcoI YGGCCR 3 cut(s) 285, 397, 1071
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 1211
AdeI CACNNNGTG 1 cut(s) 643
AfaI GTAC 1 cut(s) 812
AfiI CCNNNNNNNGG 6 cut(s) 429, 1080, 1289, 1705, 1739, 1761
AgsI TTSAA 7 cut(s) 223, 274, 553, 973, 1015, 1238, 1370
AjuI GAANNNNNNNTTGG 2 cut(s) 812, 844
Alw21I GWGCWC 1 cut(s) 1251
AoxI GGCC 5 cut(s) 285, 397, 417, 1071, 1186
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 670
AseI ATTAAT 1 cut(s) 1263
AspLEI GCGC 2 cut(s) 1472, 1556
AspS9I GGNCC 1 cut(s) 417
AsuHPI GGTGA 7 cut(s) 143, 577, 632, 728, 836, 874, 1469
AsuII TTCGAA 1 cut(s) 1393
BalI TGGCCA 1 cut(s) 1073
BanII GRGCYC 2 cut(s) 22, 1251
Bbv12I GWGCWC 1 cut(s) 1251
BbvCI CCTCAGC 1 cut(s) 119
BccI CCATC 7 cut(s) 296, 800, 853, 1063, 1142, 1448, 1754
BceAI ACGGC 1 cut(s) 412
BclI TGATCA 2 cut(s) 541, 1498
BfaI CTAG 3 cut(s) 15, 42, 167
BfmI CTRYAG 2 cut(s) 1423, 1701
BfuAI ACCTGC 1 cut(s) 1468
BglI GCCNNNNNGGC 1 cut(s) 405
BisI GCNGC 5 cut(s) 6, 400, 403, 406, 420
BlpI GCTNAGC 1 cut(s) 124
BlsI GCNGC 5 cut(s) 7, 401, 404, 407, 421
BmgT120I GGNCC 1 cut(s) 417
BmiI GGNNCC 1 cut(s) 1713
BmsI GCATC 6 cut(s) 239, 565, 744, 1066, 1402, 1598
Bpu10I CCTNAGC 2 cut(s) 119, 1719
Bpu1102I GCTNAGC 1 cut(s) 124
Bpu14I TTCGAA 1 cut(s) 1393
BpuEI CTTGAG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 403
BsaWI WCCGGW 2 cut(s) 571, 1144
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bsc4I CCNNNNNNNGG 6 cut(s) 429, 1080, 1289, 1705, 1739, 1761
Bse1I ACTGG 1 cut(s) 1095
Bse3DI GCAATG 2 cut(s) 846, 1479
BseDI CCNNGG 1 cut(s) 403
BseLI CCNNNNNNNGG 6 cut(s) 429, 1080, 1289, 1705, 1739, 1761
BseMI GCAATG 2 cut(s) 846, 1479
BseMII CTCAG 7 cut(s) 133, 138, 519, 1214, 1335, 1569, 1710
BseNI ACTGG 1 cut(s) 1095
BseRI GAGGAG 5 cut(s) 293, 313, 329, 748, 1721
BseX3I CGGCCG 1 cut(s) 397
Bsh1236I CGCG 2 cut(s) 405, 1556
Bsh1285I CGRYCG 1 cut(s) 400
BshFI GGCC 5 cut(s) 287, 399, 419, 1073, 1188
BsiEI CGRYCG 1 cut(s) 400
BsiHKAI GWGCWC 1 cut(s) 1251
BsiSI CCGG 2 cut(s) 572, 1145
BslI CCNNNNNNNGG 6 cut(s) 429, 1080, 1289, 1705, 1739, 1761
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 5 cut(s) 287, 399, 419, 1073, 1188
Bsp119I TTCGAA 1 cut(s) 1393
Bsp1286I GDGCHC 2 cut(s) 22, 1251
Bsp143I GATC 3 cut(s) 372, 541, 1498
Bsp1720I GCTNAGC 1 cut(s) 124
BspACI CCGC 9 cut(s) 327, 400, 403, 405, 408, 420, 902, 1031, 1715
BspANI GGCC 5 cut(s) 287, 399, 419, 1073, 1188
BspCNI CTCAG 7 cut(s) 132, 137, 520, 1215, 1334, 1570, 1711
BspFNI CGCG 2 cut(s) 405, 1556
BspLI GGNNCC 1 cut(s) 1713
BspMAI CTGCAG 1 cut(s) 1705
BspMI ACCTGC 1 cut(s) 1468
BspT104I TTCGAA 1 cut(s) 1393
BsrDI GCAATG 2 cut(s) 846, 1479
BsrI ACTGG 1 cut(s) 1095
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 3 cut(s) 372, 541, 1498
Bst4CI ACNGT 3 cut(s) 728, 784, 815
Bst6I CTCTTC 3 cut(s) 218, 323, 941
BstBI TTCGAA 1 cut(s) 1393
BstC8I GCNNGC 2 cut(s) 773, 1678
BstDEI CTNAG 7 cut(s) 119, 124, 528, 1223, 1321, 1578, 1719
BstDSI CCRYGG 1 cut(s) 403
BstFNI CGCG 2 cut(s) 405, 1556
BstHHI GCGC 2 cut(s) 1472, 1556
BstKTI GATC 3 cut(s) 375, 544, 1501
BstMBI GATC 3 cut(s) 372, 541, 1498
BstMCI CGRYCG 1 cut(s) 400
BstMWI GCNNNNNNNGC 6 cut(s) 11, 405, 1037, 1046, 1412, 1574
BstNSI RCATGY 1 cut(s) 1390
BstSFI CTRYAG 2 cut(s) 1423, 1701
BstUI CGCG 2 cut(s) 405, 1556
BstZI CGGCCG 1 cut(s) 397
BsuRI GGCC 5 cut(s) 287, 399, 419, 1073, 1188
BtgI CCRYGG 1 cut(s) 403
BtsI GCAGTG 3 cut(s) 1224, 1618, 1687
BtsIMutI CAGTG 6 cut(s) 291, 733, 1224, 1329, 1618, 1687
BveI ACCTGC 1 cut(s) 1468
Cac8I GCNNGC 2 cut(s) 773, 1678
CfoI GCGC 2 cut(s) 1472, 1556
Cfr13I GGNCC 1 cut(s) 417
Cfr42I CCGCGG 1 cut(s) 406
CseI GACGC 3 cut(s) 567, 1006, 1499
Csp6I GTAC 1 cut(s) 811
CviAII CATG 4 cut(s) 698, 911, 1387, 1403
CviQI GTAC 1 cut(s) 811
DdeI CTNAG 7 cut(s) 119, 124, 528, 1223, 1321, 1578, 1719
DpnI GATC 3 cut(s) 374, 543, 1500
DpnII GATC 3 cut(s) 372, 541, 1498
DraIII CACNNNGTG 1 cut(s) 643
EaeI YGGCCR 3 cut(s) 285, 397, 1071
EagI CGGCCG 1 cut(s) 397
Eam1104I CTCTTC 3 cut(s) 218, 323, 941
EarI CTCTTC 3 cut(s) 218, 323, 941
EciI GGCGGA 2 cut(s) 316, 1704
Ecl136II GAGCTC 1 cut(s) 1249
EclXI CGGCCG 1 cut(s) 397
Eco147I AGGCCT 1 cut(s) 1188
Eco24I GRGCYC 2 cut(s) 22, 1251
Eco52I CGGCCG 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 1249
Eco57I CTGAAG 1 cut(s) 1211
EcoICRI GAGCTC 1 cut(s) 1249
EcoT38I GRGCYC 2 cut(s) 22, 1251
FaeI CATG 4 cut(s) 701, 914, 1390, 1406
FalI AAGNNNNNCTT 2 cut(s) 755, 787
FatI CATG 4 cut(s) 697, 910, 1386, 1402
FauI CCCGC 1 cut(s) 1024
FauNDI CATATG 2 cut(s) 1105, 1287
FbaI TGATCA 2 cut(s) 541, 1498
FblI GTMKAC 1 cut(s) 581
Fnu4HI GCNGC 5 cut(s) 6, 400, 403, 406, 420
FriOI GRGCYC 2 cut(s) 22, 1251
Fsp4HI GCNGC 5 cut(s) 6, 400, 403, 406, 420
FspBI CTAG 3 cut(s) 15, 42, 167
GlaI GCGC 2 cut(s) 1471, 1555
GluI GCNGC 5 cut(s) 6, 400, 403, 406, 420
HaeIII GGCC 5 cut(s) 287, 399, 419, 1073, 1188
HapII CCGG 2 cut(s) 572, 1145
HgaI GACGC 3 cut(s) 567, 1006, 1499
HhaI GCGC 2 cut(s) 1472, 1556
Hin1II CATG 4 cut(s) 701, 914, 1390, 1406
Hin6I GCGC 2 cut(s) 1470, 1554
HinP1I GCGC 2 cut(s) 1470, 1554
HincII GTYRAC 3 cut(s) 582, 724, 891
HindII GTYRAC 3 cut(s) 582, 724, 891
HinfI GANTC 4 cut(s) 347, 530, 694, 1650
HpaII CCGG 2 cut(s) 572, 1145
HphI GGTGA 7 cut(s) 143, 577, 632, 728, 836, 874, 1469
Hpy166II GTNNAC 3 cut(s) 582, 724, 891
Hpy188I TCNGA 5 cut(s) 364, 372, 546, 750, 1503
Hpy188III TCNNGA 2 cut(s) 1235, 1727
Hpy8I GTNNAC 3 cut(s) 582, 724, 891
Hpy99I CGWCG 3 cut(s) 583, 653, 1000
HpyCH4III ACNGT 3 cut(s) 728, 784, 815
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 405, 1037, 1046, 1412, 1574
HpyF3I CTNAG 7 cut(s) 119, 124, 528, 1223, 1321, 1578, 1719
Hsp92II CATG 4 cut(s) 701, 914, 1390, 1406
HspAI GCGC 2 cut(s) 1470, 1554
Ksp22I TGATCA 2 cut(s) 541, 1498
KspI CCGCGG 1 cut(s) 406
Kzo9I GATC 3 cut(s) 372, 541, 1498
LmnI GCTCC 2 cut(s) 1151, 1246
LweI GCATC 6 cut(s) 239, 565, 744, 1066, 1402, 1598
MaeI CTAG 3 cut(s) 15, 42, 167
MaeIII GTNAC 5 cut(s) 58, 662, 784, 1382, 1487
MalI GATC 3 cut(s) 374, 543, 1500
MboI GATC 3 cut(s) 372, 541, 1498
MboII GAAGA 6 cut(s) 205, 208, 211, 310, 958, 1223
MhlI GDGCHC 2 cut(s) 22, 1251
MlsI TGGCCA 1 cut(s) 1073
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 1 cut(s) 539
Mox20I TGGCCA 1 cut(s) 1073
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 7 cut(s) 135, 936, 1062, 1166, 1212, 1263, 1691
Msp20I TGGCCA 1 cut(s) 1073
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 2 cut(s) 572, 1145
Mva1269I GAATGC 1 cut(s) 637
MvnI CGCG 2 cut(s) 405, 1556
MwoI GCNNNNNNNGC 6 cut(s) 11, 405, 1037, 1046, 1412, 1574
NdeI CATATG 2 cut(s) 1105, 1287
NdeII GATC 3 cut(s) 372, 541, 1498
NlaIII CATG 4 cut(s) 701, 914, 1390, 1406
NlaIV GGNNCC 1 cut(s) 1713
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 4 cut(s) 58, 662, 1382, 1487
NspI RCATGY 1 cut(s) 1390
NspV TTCGAA 1 cut(s) 1393
PceI AGGCCT 1 cut(s) 1188
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 3 cut(s) 347, 694, 1650
PflMI CCANNNNNTGG 1 cut(s) 429
PkrI GCNGC 5 cut(s) 7, 401, 404, 407, 421
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PshBI ATTAAT 1 cut(s) 1263
Psp124BI GAGCTC 1 cut(s) 1251
PspN4I GGNNCC 1 cut(s) 1713
PspPI GGNCC 1 cut(s) 417
PstI CTGCAG 1 cut(s) 1705
RsaI GTAC 1 cut(s) 812
RsaNI GTAC 1 cut(s) 811
SacI GAGCTC 1 cut(s) 1251
SacII CCGCGG 1 cut(s) 406
SalI GTCGAC 1 cut(s) 580
SaqAI TTAA 7 cut(s) 135, 936, 1062, 1166, 1212, 1263, 1691
SatI GCNGC 5 cut(s) 6, 400, 403, 406, 420
Sau3AI GATC 3 cut(s) 372, 541, 1498
Sau96I GGNCC 1 cut(s) 417
SchI GAGTC 1 cut(s) 539
SduI GDGCHC 2 cut(s) 22, 1251
SfaNI GCATC 6 cut(s) 239, 565, 744, 1066, 1402, 1598
SfcI CTRYAG 2 cut(s) 1423, 1701
Sfr303I CCGCGG 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 1393
SgrBI CCGCGG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 54
SmoI CTYRAG 1 cut(s) 54
SseBI AGGCCT 1 cut(s) 1188
SsiI CCGC 9 cut(s) 327, 400, 403, 405, 408, 420, 902, 1031, 1715
SspMI CTAG 3 cut(s) 15, 42, 167
SstI GAGCTC 1 cut(s) 1251
StuI AGGCCT 1 cut(s) 1188
TaaI ACNGT 3 cut(s) 728, 784, 815
TaqI TCGA 5 cut(s) 581, 648, 1205, 1251, 1393
TauI GCSGC 4 cut(s) 402, 405, 408, 422
TfiI GAWTC 3 cut(s) 347, 694, 1650
Tru1I TTAA 7 cut(s) 135, 936, 1062, 1166, 1212, 1263, 1691
Tru9I TTAA 7 cut(s) 135, 936, 1062, 1166, 1212, 1263, 1691
TscAI CASTG 6 cut(s) 298, 733, 1224, 1329, 1618, 1687
TseFI GTSAC 4 cut(s) 58, 662, 1382, 1487
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 4 cut(s) 58, 662, 1382, 1487
TspGWI ACGGA 2 cut(s) 1370, 1790
TspRI CASTG 6 cut(s) 298, 733, 1224, 1329, 1618, 1687
Van91I CCANNNNNTGG 1 cut(s) 429
VspI ATTAAT 1 cut(s) 1263
XapI RAATTY 1 cut(s) 670
XceI RCATGY 1 cut(s) 1390
XcmI CCANNNNNNNNNTGG 1 cut(s) 1679
XmiI GTMKAC 1 cut(s) 581
XspI CTAG 3 cut(s) 15, 42, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.