FvH4_6g18941

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0008873
Physical Location & Seq
Reverse (-)
12525923 .. 12530220
4298 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18941.t1

Sequence Viewer

Length: 1347 bp
ATGACCTTTAGTCCTATAAGAACGGCTGCTTCGTCCGACCACCATTTTGCGGTGGAGACACTAGTTTCGGTGATGAGAACCAGGAAAGTCAACCTTAAAGCTTTCATGGGGACTTCTTTTGTATGGGGATTTGGGCACCTGTCTGCGTATTCGACAACACAGGATCACTATGTCTTTCATTTTCAACAAAAGATGGATCACGAGTTTGTTTTGAACGACGGTCCTTGGTTTTTTGATGAGCAGGTTCTAGAGGCGGCAACCTATTATGGATTGAAGCTTGTTCGGTGCCTCTCAAATATTCAGGTGAAACAAGCATACTCGCCTCAAACTTTTGAGTTTGTTTATGGTGTTAAGGCGGTGGTCCATTTCAAGTACGATCGGATGGTCGGCTTTTGTTGTGTGTGTGGCCTCTTGAAACACCCGGCCCCTACCGGCTGCGACGACCCCCCGAATATGGAGTGCAAAGCATCCCAAAGCTTTCACTATAAACCTTCCGGACAAGATTGCGGCCTTTCTTGTCGGTCAATTTGGGATTTTTTCGGCCTTCTCATCAATGCATCTCCCTTGCCTCTCCCGCGCACGAAGTTCCAGACCGTGCTATCAGTGAACATCTCAGTGAACCTATCACAGGCAAAAGACGTGCAGAAGCGGGAGAAGAACAAACCCAATGTCGAAGGTGAGCAGCGTGTGCTCAAGGCTTGCCACAAGCGGGTGGTCAAAGCTCTTATTCAGAAGGAGGAGCAGGTGATGACTGCGGCGGTTCTGTCCTCCAAGTCATCCACAACCAGACCAACCCCTTCCACGCCCTCTTCTTCTTCAAATGGGCATCAAACCCTCACCCCAATCCCAACAACTACTCCCATACCTTCCAATGCTACTCTGCCATCACTGATCTCCTTCTCCACCACTCCCTCTTCTCCTCCGCCTCATCACTCCTCTGAGAATCCAATAAGCTTCGTGACTTTCTCATCGGTAAGTTCATCACAGCTCACGACCGCCATTGATTGGTTTCATAAGGCGAAAGTGATCAAAAATGGGCGGTGCTTGTTTTCTTACAATGCTATCCTGGGTGTGCTGGTTAGGGCTAATAAGATTGGTTTAGCTGAGTCAATTTATGATCAGATTCTCAAGGAAGGTGTGGTGAAACCGGATTTGTCGACTTATACTATAATGATTAGAGGGTTTTGCAAGGTGGGTGAGATTTGGAATGCACAGAAGGTGTTCGACGAAATGACTTGTGAGCCGAATTTGATTACTTATAATACTTTGATTAATGGGATGTGCAAGAAGGGTGAGCTTGATAGTGCGAGGAGAGTTTTGGGTAAGATGATGGAGAGCAAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

449

Amino Acids

49.82

Weight (kDa)

9.09

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 111 - 140 6.2e-07 Zinc knuckle
PPR_2 PF13041 349 - 397 2.4e-11 PPR repeat family
PPR_1 PF12854 381 - 412 1.9e-11 PPR repeat
PPR_3 PF13812 381 - 425 2.3e-07 Pentatricopeptide repeat domain
PPR PF01535 386 - 412 1.8e-06 PPR repeat
PPR_1 PF12854 413 - 443 1.2e-13 PPR repeat
PPR_2 PF13041 415 - 445 1.9e-07 PPR repeat family
PPR PF01535 418 - 446 4.5e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1260
AarI CACCTGC 1 cut(s) 733
Acc36I ACCTGC 2 cut(s) 232, 733
AccB1I GGYRCC 2 cut(s) 135, 285
AccB7I CCANNNNNTGG 1 cut(s) 1005
AccI GTMKAC 1 cut(s) 1157
AccII CGCG 1 cut(s) 577
AccIII TCCGGA 1 cut(s) 494
AclWI GGATC 2 cut(s) 171, 204
AcsI RAATTY 1 cut(s) 1246
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 5 cut(s) 49, 454, 628, 709, 1005
AgsI TTSAA 6 cut(s) 185, 214, 274, 370, 415, 819
AhdI GACNNNNNGTC 1 cut(s) 9
AhlI ACTAGT 1 cut(s) 61
AjiI CACGTC 1 cut(s) 640
AjnI CCWGG 2 cut(s) 80, 1065
AluBI AGCT 8 cut(s) 101, 277, 477, 722, 954, 988, 1103, 1297
AluI AGCT 8 cut(s) 101, 277, 477, 722, 954, 988, 1103, 1297
Alw21I GWGCWC 1 cut(s) 693
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 171, 204
Aor13HI TCCGGA 1 cut(s) 494
AoxI GGCC 4 cut(s) 406, 423, 508, 541
ApeKI GCWGC 3 cut(s) 26, 435, 682
ApoI RAATTY 1 cut(s) 1246
ArsI GACNNNNNNTTYG 6 cut(s) 29, 49, 61, 81, 654, 686
AseI ATTAAT 1 cut(s) 1272
Asp700I GAANNNNTTC 1 cut(s) 1220
AspLEI GCGC 1 cut(s) 579
AspS9I GGNCC 3 cut(s) 221, 361, 424
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 8 cut(s) 82, 316, 689, 757, 829, 1153, 1208, 1304
AvaII GGWCC 2 cut(s) 221, 361
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 2 cut(s) 135, 285
BauI CACGAG 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 3 cut(s) 13, 422, 694
BccI CCATC 4 cut(s) 187, 376, 892, 1324
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 82, 1067
BclI TGATCA 2 cut(s) 1026, 1117
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 1 cut(s) 50
BcuI ACTAGT 1 cut(s) 61
BfaI CTAG 2 cut(s) 62, 248
BfuAI ACCTGC 2 cut(s) 232, 733
BisI GCNGC 6 cut(s) 27, 255, 436, 508, 683, 756
BlsI GCNGC 6 cut(s) 28, 256, 437, 509, 684, 757
Bme1390I CCNGG 3 cut(s) 82, 422, 1067
Bme18I GGWCC 2 cut(s) 221, 361
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 640
BmgT120I GGNCC 3 cut(s) 221, 361, 424
BmiI GGNNCC 3 cut(s) 137, 287, 426
BmrFI CCNGG 3 cut(s) 82, 422, 1067
BmsI GCATC 3 cut(s) 476, 566, 835
BpuEI CTTGAG 2 cut(s) 677, 1112
BpuMI CCSGG 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 224, 1066
BsaWI WCCGGW 2 cut(s) 494, 1147
BsaXI ACNNNNNCTCC 2 cut(s) 841, 871
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 454, 628, 709, 1005
Bse118I RCCGGY 1 cut(s) 431
BseAI TCCGGA 1 cut(s) 494
BseBI CCWGG 2 cut(s) 82, 1067
BseDI CCNNGG 2 cut(s) 224, 1066
BseGI GGATG 4 cut(s) 387, 467, 776, 1284
BseLI CCNNNNNNNGG 5 cut(s) 49, 454, 628, 709, 1005
BseMII CTCAG 3 cut(s) 627, 930, 1095
BseRI GAGGAG 4 cut(s) 752, 909, 925, 1324
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 3 cut(s) 13, 422, 694
BsgI GTGCAG 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 577
Bsh1285I CGRYCG 2 cut(s) 379, 996
BshFI GGCC 4 cut(s) 408, 425, 510, 543
BshNI GGYRCC 2 cut(s) 135, 285
BsiEI CGRYCG 2 cut(s) 379, 996
BsiHKAI GWGCWC 1 cut(s) 693
BsiSI CCGG 4 cut(s) 422, 432, 495, 1148
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 5 cut(s) 49, 454, 628, 709, 1005
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 1213
BsnI GGCC 4 cut(s) 408, 425, 510, 543
Bsp1286I GDGCHC 2 cut(s) 138, 693
Bsp13I TCCGGA 1 cut(s) 494
Bsp143I GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
BspANI GGCC 4 cut(s) 408, 425, 510, 543
BspCNI CTCAG 3 cut(s) 626, 931, 1096
BspEI TCCGGA 1 cut(s) 494
BspFNI CGCG 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 137, 287, 426
BspMI ACCTGC 2 cut(s) 232, 733
BspPI GGATC 2 cut(s) 171, 204
BspT107I GGYRCC 2 cut(s) 135, 285
BsrFI RCCGGY 1 cut(s) 431
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 224, 1066
BssMI GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 82, 1067
Bst4CI ACNGT 2 cut(s) 221, 595
Bst6I CTCTTC 2 cut(s) 814, 919
BstAPI GCANNNNNTGC 1 cut(s) 688
BstC8I GCNNGC 1 cut(s) 700
BstDEI CTNAG 3 cut(s) 613, 939, 1104
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 4 cut(s) 387, 467, 776, 1284
BstFNI CGCG 1 cut(s) 577
BstHHI GCGC 1 cut(s) 579
BstKTI GATC 6 cut(s) 166, 199, 379, 894, 1029, 1120
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
BstMCI CGRYCG 2 cut(s) 379, 996
BstMWI GCNNNNNNNGC 2 cut(s) 574, 688
BstNI CCWGG 2 cut(s) 82, 1067
BstSCI CCNGG 3 cut(s) 80, 420, 1065
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 1 cut(s) 577
BstV1I GCAGC 3 cut(s) 13, 422, 694
BsuRI GGCC 4 cut(s) 408, 425, 510, 543
BtrI CACGTC 1 cut(s) 640
BtsCI GGATG 4 cut(s) 387, 467, 776, 1284
BtsIMutI CAGTG 3 cut(s) 609, 621, 887
BveI ACCTGC 2 cut(s) 232, 733
Cac8I GCNNGC 1 cut(s) 700
CfoI GCGC 1 cut(s) 579
Cfr10I RCCGGY 1 cut(s) 431
Cfr13I GGNCC 3 cut(s) 221, 361, 424
Csp6I GTAC 1 cut(s) 373
CviAII CATG 1 cut(s) 106
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 3 cut(s) 613, 939, 1104
DpnI GATC 6 cut(s) 165, 198, 378, 893, 1028, 1119
DpnII GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
DriI GACNNNNNGTC 1 cut(s) 9
Eam1104I CTCTTC 2 cut(s) 814, 919
Eam1105I GACNNNNNGTC 1 cut(s) 9
EarI CTCTTC 2 cut(s) 814, 919
EciI GGCGGA 1 cut(s) 912
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 221, 361
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoRII CCWGG 2 cut(s) 80, 1065
EcoT14I CCWWGG 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 109
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FaqI GGGAC 1 cut(s) 124
FatI CATG 1 cut(s) 105
FauI CCCGC 3 cut(s) 582, 642, 702
FbaI TGATCA 2 cut(s) 1026, 1117
FblI GTMKAC 1 cut(s) 1157
Fnu4HI GCNGC 6 cut(s) 27, 255, 436, 508, 683, 756
FokI GGATG 4 cut(s) 394, 454, 763, 1291
Fsp4HI GCNGC 6 cut(s) 27, 255, 436, 508, 683, 756
FspBI CTAG 2 cut(s) 62, 248
GlaI GCGC 1 cut(s) 578
GluI GCNGC 6 cut(s) 27, 255, 436, 508, 683, 756
HaeIII GGCC 4 cut(s) 408, 425, 510, 543
HapII CCGG 4 cut(s) 422, 432, 495, 1148
HhaI GCGC 1 cut(s) 579
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 577
HinP1I GCGC 1 cut(s) 577
HincII GTYRAC 2 cut(s) 91, 1158
HindII GTYRAC 2 cut(s) 91, 1158
HindIII AAGCTT 4 cut(s) 99, 275, 475, 952
HinfI GANTC 3 cut(s) 943, 1106, 1123
HpaII CCGG 4 cut(s) 422, 432, 495, 1148
HphI GGTGA 8 cut(s) 82, 316, 689, 757, 829, 1153, 1208, 1304
Hpy166II GTNNAC 4 cut(s) 91, 607, 619, 1158
Hpy188I TCNGA 5 cut(s) 37, 381, 732, 940, 1122
Hpy188III TCNNGA 7 cut(s) 200, 248, 412, 495, 589, 958, 991
Hpy8I GTNNAC 4 cut(s) 91, 607, 619, 1158
Hpy99I CGWCG 3 cut(s) 221, 443, 1229
HpyCH4III ACNGT 2 cut(s) 221, 595
HpyCH4IV ACGT 1 cut(s) 639
HpyCH4V TGCA 6 cut(s) 462, 557, 643, 1188, 1211, 1284
HpyF10VI GCNNNNNNNGC 2 cut(s) 574, 688
HpyF3I CTNAG 3 cut(s) 613, 939, 1104
HpySE526I ACGT 1 cut(s) 639
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 577
Kpn2I TCCGGA 1 cut(s) 494
Ksp22I TGATCA 2 cut(s) 1026, 1117
Kzo9I GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
LmnI GCTCC 1 cut(s) 739
Lsp1109I GCAGC 3 cut(s) 13, 422, 694
LweI GCATC 3 cut(s) 476, 566, 835
MaeI CTAG 2 cut(s) 62, 248
MaeII ACGT 1 cut(s) 639
MaeIII GTNAC 1 cut(s) 958
MalI GATC 6 cut(s) 165, 198, 378, 893, 1028, 1119
MboI GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
MboII GAAGA 5 cut(s) 667, 801, 804, 807, 906
MhlI GDGCHC 2 cut(s) 138, 693
MluCI AATT 3 cut(s) 525, 1110, 1246
MlyI GAGTC 1 cut(s) 1115
MmeI TCCRAC 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 1 cut(s) 494
MroXI GAANNNNTTC 1 cut(s) 1220
MseI TTAA 3 cut(s) 96, 351, 1272
MslI CAYNNNNRTG 1 cut(s) 614
MspI CCGG 4 cut(s) 422, 432, 495, 1148
MspR9I CCNGG 3 cut(s) 82, 422, 1067
Mva1269I GAATGC 1 cut(s) 1213
MvaI CCWGG 2 cut(s) 82, 1067
MvnI CGCG 1 cut(s) 577
MwoI GCNNNNNNNGC 2 cut(s) 574, 688
NciI CCSGG 1 cut(s) 422
NdeII GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 3 cut(s) 137, 287, 426
NmuCI GTSAC 1 cut(s) 958
NsiI ATGCAT 1 cut(s) 559
PaqCI CACCTGC 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 1213
PdmI GAANNNNTTC 1 cut(s) 1220
PfeI GAWTC 2 cut(s) 943, 1123
PflMI CCANNNNNTGG 1 cut(s) 1005
PkrI GCNGC 6 cut(s) 28, 256, 437, 509, 684, 757
Ple19I CGATCG 1 cut(s) 379
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
PshBI ATTAAT 1 cut(s) 1272
PsiI TTATAA 1 cut(s) 1260
Psp6I CCWGG 2 cut(s) 80, 1065
PspGI CCWGG 2 cut(s) 80, 1065
PspN4I GGNNCC 3 cut(s) 137, 287, 426
PspPI GGNCC 3 cut(s) 221, 361, 424
PvuI CGATCG 1 cut(s) 379
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 614
SalI GTCGAC 1 cut(s) 1156
SaqAI TTAA 3 cut(s) 96, 351, 1272
SatI GCNGC 6 cut(s) 27, 255, 436, 508, 683, 756
Sau3AI GATC 6 cut(s) 163, 196, 376, 891, 1026, 1117
Sau96I GGNCC 3 cut(s) 221, 361, 424
SchI GAGTC 1 cut(s) 1115
ScrFI CCNGG 3 cut(s) 82, 422, 1067
SduI GDGCHC 2 cut(s) 138, 693
SfaNI GCATC 3 cut(s) 476, 566, 835
SinI GGWCC 2 cut(s) 221, 361
SmiMI CAYNNNNRTG 1 cut(s) 614
SmlI CTYRAG 2 cut(s) 692, 1127
SmoI CTYRAG 2 cut(s) 692, 1127
SpeI ACTAGT 1 cut(s) 61
Sse9I AATT 3 cut(s) 525, 1110, 1246
SspI AATATT 1 cut(s) 298
SspMI CTAG 2 cut(s) 62, 248
StyD4I CCNGG 3 cut(s) 80, 420, 1065
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 2 cut(s) 221, 595
TaiI ACGT 1 cut(s) 642
TaqI TCGA 4 cut(s) 152, 672, 1157, 1224
TaqII GACCGA 1 cut(s) 510
TasI AATT 3 cut(s) 525, 1110, 1246
TauI GCSGC 3 cut(s) 257, 510, 758
TfiI GAWTC 2 cut(s) 943, 1123
Tru1I TTAA 3 cut(s) 96, 351, 1272
Tru9I TTAA 3 cut(s) 96, 351, 1272
TscAI CASTG 3 cut(s) 609, 621, 894
TseFI GTSAC 1 cut(s) 958
TseI GCWGC 3 cut(s) 26, 435, 682
Tsp45I GTSAC 1 cut(s) 958
TspDTI ATGAA 4 cut(s) 94, 167, 969, 1001
TspRI CASTG 3 cut(s) 609, 621, 894
Van91I CCANNNNNTGG 1 cut(s) 1005
VpaK11BI GGWCC 2 cut(s) 221, 361
VspI ATTAAT 1 cut(s) 1272
XagI CCTNNNNNAGG 1 cut(s) 626
XapI RAATTY 1 cut(s) 1246
XbaI TCTAGA 1 cut(s) 247
XmiI GTMKAC 1 cut(s) 1157
XmnI GAANNNNTTC 1 cut(s) 1220
XspI CTAG 2 cut(s) 62, 248
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.