Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028020.1

Orthogroup ID

OG0008873

Physical Location & Seq

Genomic Coordinates Reverse (-)

577 .. 2639

Gene Structure 2063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028020.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

atggctgcaccagctagagccctaaacccatttcacacctctaccaatcactctcaagtgacactcataacctccctcctgcaaaccctaaacccacagacacccaacccctcaaacctcagctcagcccctcttaaccagttctcacctcacctaaacccaaccctagttatccaagccctccacaaccagaccaatccctaccacgccctcttcttcttcaaatgggcatcaaaccctgaccccaatcccaacaactactcccacaccttcaaatgctactcggccatcactgacatcctcctctcccactccctcttctcctccgcctcatcactcctccaagaatccaatcacctctctgattttctgatcggcaagttcatcacagctcacggccgccgcggcggtgtgagggccgccattgattggtttcacaaggcgaaagtgattgagaatgggaggtgcttgttttcttacaatgcaattctgggtgtgttggttaggtcaaataggattggtttagctgagtcaatttatgatcagattttcaaggaaggtctggtgaaaccggatgcgtcgacttataccacaatgattagagggttttgtaaagtgggtgagattgagaatgcacagaaggtgttcgatgaaatgacttgtgagccgaatttgattacttacaatactatgattcatgggttctgcaagaagggtgaggttgatagcgcgaggagagttttgagtcagatgatggagggtaaggattgcttgcctgatacggtaacttatacaactttgattgatgggtatagtaagaaaggtgagttgggcgaggcagtgaagtgtatggatgagatggtgaaacagggttgtgagcctaatgtgttgacttacaatgcggtgattcatggtttttgtttgagtgggaatgttaatgaggcaaagaggatgatgacgaggatgaggttgaatggtgtgaaggatgatatagcgacgcatacgagtatattgaaagggctttgcattgcggggaaggctgacgaagctgttgagcatcttaaagagatggccagacttgggatgaaactggatgtgaaaccgtatggaattgttgtcaatgagtattgtaagatgaaagaaccggatggagcaatttcgcttttaatggaaatgagaatgagaggcctgaagccaagtgtttcgagctttaatgcagtgctgagtgttcttcttgaaaatggggagctcgaaagagccattaatcttgtaaagcaaatgccacaaatgggttgctttcccaatttcttttcatacaactcagtgatatgtagtctttgtaatgtgagaggtagaatgggggaagttgaagggcttatccatgacatgcttcgaaatggtcatgccttcgatgccacgctctgtagttgcttggtcaaaggttattgcgaggatggtgatttgagaagcgcaatgcaggttttctgtgacgcacttgatcagaggtatattattagtttggagagcttttcagttttcgtcaaagagttatgcgccaaggggaaggctgttgaggctgagaggatgtttgaggatatgtgtaaaagatgcagtgtggttcatatagatatttacagaaagtgggaagttaatttgccagcagaggaggttcctccagagcttccagaaccaacacttagtatcaactttgccagagatgggatgggatgcaaaagatggagtggttatccttggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

585

Amino Acids

65.34

Weight (kDa)

6.78

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008873)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18940 FvH4_6g18941
malus_domestica	MD08G1069200.v1.1 MD08G1069300.v1.1 MD15G1052800.v1.1
prunus_persica	Prupe.1G406700_v2.0.a1
pyrus_communis	pycom08g05700 pycom08g05710 pycom15g05050
rosa_chinensis	RchiOBHm_Chr6g0311521
rosa_laevigata	RLG00000010397
rosa_multiflora	Rmu_co8085934.1_g000001 Rmu_sc0028020.1_g000001 Rmu_sc0035116.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157540
rosa_rugosa	Rorug06G0389400
rosa_samantha	Rh6AG504200 Rh6AG504300 Rh6BG514900 Rh6CG520700 Rh6DG506700 Rh7DG318900
rosa_wichuraiana	Rw6G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1468
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	581
AccII	CGCG	2 cut(s)	405, 731
AciI	CCGC	8 cut(s)	327, 400, 403, 405, 408, 420, 902, 1031
AcoI	YGGCCR	3 cut(s)	285, 397, 1071
AcsI	RAATTY	1 cut(s)	670
AcuI	CTGAAG	1 cut(s)	1211
AfiI	CCNNNNNNNGG	4 cut(s)	429, 1080, 1289, 1719
AgsI	TTSAA	7 cut(s)	223, 274, 553, 973, 1015, 1238, 1370
AjuI	GAANNNNNNNTTGG	2 cut(s)	812, 844
AluBI	AGCT	9 cut(s)	14, 123, 392, 527, 1049, 1209, 1249, 1527, 1681
AluI	AGCT	9 cut(s)	14, 123, 392, 527, 1049, 1209, 1249, 1527, 1681
Alw21I	GWGCWC	1 cut(s)	1251
AoxI	GGCC	5 cut(s)	285, 397, 417, 1071, 1186
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	670
AseI	ATTAAT	1 cut(s)	1263
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	3 cut(s)	731, 1472, 1556
AspS9I	GGNCC	1 cut(s)	417
AsuII	TTCGAA	1 cut(s)	1393
BalI	TGGCCA	1 cut(s)	1073
BanII	GRGCYC	2 cut(s)	22, 1251
Bbv12I	GWGCWC	1 cut(s)	1251
BbvCI	CCTCAGC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	412
BclI	TGATCA	2 cut(s)	541, 1498
BfaI	CTAG	2 cut(s)	15, 167
BfmI	CTRYAG	1 cut(s)	1423
BfuAI	ACCTGC	1 cut(s)	1468
BglI	GCCNNNNNGGC	1 cut(s)	405
BisI	GCNGC	5 cut(s)	6, 400, 403, 406, 420
BlpI	GCTNAGC	1 cut(s)	124
BlsI	GCNGC	5 cut(s)	7, 401, 404, 407, 421
BmgT120I	GGNCC	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	1671
BmsI	GCATC	6 cut(s)	239, 565, 1066, 1402, 1598, 1718
BpmI	CTGGAG	1 cut(s)	1659
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	1393
BpuEI	CTTGAG	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	403, 1557, 1751
BsaWI	WCCGGW	2 cut(s)	571, 1144
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	4 cut(s)	429, 1080, 1289, 1719
Bse1I	ACTGG	2 cut(s)	139, 1095
Bse3DI	GCAATG	2 cut(s)	1026, 1479
BseDI	CCNNGG	3 cut(s)	403, 1557, 1751
BseLI	CCNNNNNNNGG	4 cut(s)	429, 1080, 1289, 1719
BseMI	GCAATG	2 cut(s)	1026, 1479
BseMII	CTCAG	6 cut(s)	133, 138, 519, 1214, 1335, 1569
BseNI	ACTGG	2 cut(s)	139, 1095
BseRI	GAGGAG	5 cut(s)	293, 313, 329, 748, 1679
BseX3I	CGGCCG	1 cut(s)	397
Bsh1236I	CGCG	2 cut(s)	405, 731
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	5 cut(s)	287, 399, 419, 1073, 1188
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	1251
BsiSI	CCGG	2 cut(s)	572, 1145
BslI	CCNNNNNNNGG	4 cut(s)	429, 1080, 1289, 1719
BsmI	GAATGC	1 cut(s)	637
BsnI	GGCC	5 cut(s)	287, 399, 419, 1073, 1188
Bsp119I	TTCGAA	1 cut(s)	1393
Bsp1286I	GDGCHC	2 cut(s)	22, 1251
Bsp143I	GATC	3 cut(s)	372, 541, 1498
Bsp1720I	GCTNAGC	1 cut(s)	124
BspACI	CCGC	8 cut(s)	327, 400, 403, 405, 408, 420, 902, 1031
BspANI	GGCC	5 cut(s)	287, 399, 419, 1073, 1188
BspCNI	CTCAG	6 cut(s)	132, 137, 520, 1215, 1334, 1570
BspFNI	CGCG	2 cut(s)	405, 731
BspLI	GGNNCC	1 cut(s)	1671
BspMI	ACCTGC	1 cut(s)	1468
BspT104I	TTCGAA	1 cut(s)	1393
BsrDI	GCAATG	2 cut(s)	1026, 1479
BsrI	ACTGG	2 cut(s)	139, 1095
BssECI	CCNNGG	3 cut(s)	403, 1557, 1751
BssMI	GATC	3 cut(s)	372, 541, 1498
BssT1I	CCWWGG	2 cut(s)	1557, 1751
Bst4CI	ACNGT	2 cut(s)	784, 1104
Bst6I	CTCTTC	2 cut(s)	218, 323
BstBI	TTCGAA	1 cut(s)	1393
BstC8I	GCNNGC	2 cut(s)	773, 1659
BstDEI	CTNAG	7 cut(s)	119, 124, 528, 1223, 1321, 1578, 1697
BstDSI	CCRYGG	1 cut(s)	403
BstFNI	CGCG	2 cut(s)	405, 731
BstHHI	GCGC	3 cut(s)	731, 1472, 1556
BstKTI	GATC	3 cut(s)	375, 544, 1501
BstMBI	GATC	3 cut(s)	372, 541, 1498
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 405, 1037, 1046, 1412, 1574
BstNSI	RCATGY	1 cut(s)	1390
BstSFI	CTRYAG	1 cut(s)	1423
BstUI	CGCG	2 cut(s)	405, 731
BstZI	CGGCCG	1 cut(s)	397
BsuRI	GGCC	5 cut(s)	287, 399, 419, 1073, 1188
BtgI	CCRYGG	1 cut(s)	403
BtsI	GCAGTG	3 cut(s)	846, 1224, 1618
BtsIMutI	CAGTG	5 cut(s)	291, 846, 1224, 1329, 1618
BveI	ACCTGC	1 cut(s)	1468
Cac8I	GCNNGC	2 cut(s)	773, 1659
CfoI	GCGC	3 cut(s)	731, 1472, 1556
Cfr13I	GGNCC	1 cut(s)	417
Cfr42I	CCGCGG	1 cut(s)	406
CseI	GACGC	3 cut(s)	567, 1006, 1499
CviAII	CATG	5 cut(s)	698, 911, 1382, 1387, 1403
DdeI	CTNAG	7 cut(s)	119, 124, 528, 1223, 1321, 1578, 1697
DpnI	GATC	3 cut(s)	374, 543, 1500
DpnII	GATC	3 cut(s)	372, 541, 1498
EaeI	YGGCCR	3 cut(s)	285, 397, 1071
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	2 cut(s)	218, 323
EarI	CTCTTC	2 cut(s)	218, 323
EciI	GGCGGA	1 cut(s)	316
Ecl136II	GAGCTC	1 cut(s)	1249
EclXI	CGGCCG	1 cut(s)	397
Eco130I	CCWWGG	2 cut(s)	1557, 1751
Eco147I	AGGCCT	1 cut(s)	1188
Eco24I	GRGCYC	2 cut(s)	22, 1251
Eco52I	CGGCCG	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	1249
Eco57I	CTGAAG	1 cut(s)	1211
EcoICRI	GAGCTC	1 cut(s)	1249
EcoT14I	CCWWGG	2 cut(s)	1557, 1751
EcoT38I	GRGCYC	2 cut(s)	22, 1251
ErhI	CCWWGG	2 cut(s)	1557, 1751
FaeI	CATG	5 cut(s)	701, 914, 1385, 1390, 1406
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	5 cut(s)	697, 910, 1381, 1386, 1402
FauI	CCCGC	1 cut(s)	1024
FbaI	TGATCA	2 cut(s)	541, 1498
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	5 cut(s)	6, 400, 403, 406, 420
FriOI	GRGCYC	2 cut(s)	22, 1251
Fsp4HI	GCNGC	5 cut(s)	6, 400, 403, 406, 420
FspBI	CTAG	2 cut(s)	15, 167
GlaI	GCGC	3 cut(s)	730, 1471, 1555
GluI	GCNGC	5 cut(s)	6, 400, 403, 406, 420
GsuI	CTGGAG	1 cut(s)	1659
HaeIII	GGCC	5 cut(s)	287, 399, 419, 1073, 1188
HapII	CCGG	2 cut(s)	572, 1145
HgaI	GACGC	3 cut(s)	567, 1006, 1499
HhaI	GCGC	3 cut(s)	731, 1472, 1556
Hin1II	CATG	5 cut(s)	701, 914, 1385, 1390, 1406
Hin6I	GCGC	3 cut(s)	729, 1470, 1554
HinP1I	GCGC	3 cut(s)	729, 1470, 1554
HincII	GTYRAC	2 cut(s)	582, 891
HindII	GTYRAC	2 cut(s)	582, 891
HinfI	GANTC	5 cut(s)	347, 530, 694, 745, 907
HpaII	CCGG	2 cut(s)	572, 1145
Hpy166II	GTNNAC	2 cut(s)	582, 891
Hpy188I	TCNGA	5 cut(s)	364, 372, 546, 750, 1503
Hpy188III	TCNNGA	3 cut(s)	1235, 1676, 1685
Hpy8I	GTNNAC	2 cut(s)	582, 891
Hpy99I	CGWCG	2 cut(s)	583, 1000
HpyAV	CCTTC	9 cut(s)	280, 551, 634, 706, 976, 1030, 1364, 1417, 1558
HpyCH4III	ACNGT	2 cut(s)	784, 1104
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 405, 1037, 1046, 1412, 1574
HpyF3I	CTNAG	7 cut(s)	119, 124, 528, 1223, 1321, 1578, 1697
Hsp92II	CATG	5 cut(s)	701, 914, 1385, 1390, 1406
HspAI	GCGC	3 cut(s)	729, 1470, 1554
Ksp22I	TGATCA	2 cut(s)	541, 1498
KspI	CCGCGG	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	372, 541, 1498
LmnI	GCTCC	2 cut(s)	1151, 1246
LweI	GCATC	6 cut(s)	239, 565, 1066, 1402, 1598, 1718
MaeI	CTAG	2 cut(s)	15, 167
MaeIII	GTNAC	3 cut(s)	58, 784, 1487
MalI	GATC	3 cut(s)	374, 543, 1500
MboI	GATC	3 cut(s)	372, 541, 1498
MboII	GAAGA	5 cut(s)	205, 208, 211, 310, 1223
MhlI	GDGCHC	2 cut(s)	22, 1251
MlsI	TGGCCA	1 cut(s)	1073
MluCI	AATT	7 cut(s)	486, 534, 670, 1110, 1155, 1303, 1651
MluNI	TGGCCA	1 cut(s)	1073
MlyI	GAGTC	2 cut(s)	539, 754
Mox20I	TGGCCA	1 cut(s)	1073
MroXI	GAANNNNTTC	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	1073
MseI	TTAA	7 cut(s)	135, 936, 1062, 1166, 1212, 1263, 1650
Msp20I	TGGCCA	1 cut(s)	1073
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	2 cut(s)	572, 1145
Mva1269I	GAATGC	1 cut(s)	637
MvnI	CGCG	2 cut(s)	405, 731
MwoI	GCNNNNNNNGC	6 cut(s)	11, 405, 1037, 1046, 1412, 1574
NdeII	GATC	3 cut(s)	372, 541, 1498
NlaIII	CATG	5 cut(s)	701, 914, 1385, 1390, 1406
NlaIV	GGNNCC	1 cut(s)	1671
NmeAIII	GCCGAG	1 cut(s)	263
NmuCI	GTSAC	2 cut(s)	58, 1487
NspI	RCATGY	1 cut(s)	1390
NspV	TTCGAA	1 cut(s)	1393
PceI	AGGCCT	1 cut(s)	1188
PctI	GAATGC	1 cut(s)	637
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	347, 694, 907
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	5 cut(s)	7, 401, 404, 407, 421
PleI	GAGTC	2 cut(s)	538, 753
PpsI	GAGTC	2 cut(s)	538, 753
PshBI	ATTAAT	1 cut(s)	1263
Psp124BI	GAGCTC	1 cut(s)	1251
PspN4I	GGNNCC	1 cut(s)	1671
PspPI	GGNCC	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	1251
SacII	CCGCGG	1 cut(s)	406
SalI	GTCGAC	1 cut(s)	580
SaqAI	TTAA	7 cut(s)	135, 936, 1062, 1166, 1212, 1263, 1650
SatI	GCNGC	5 cut(s)	6, 400, 403, 406, 420
Sau3AI	GATC	3 cut(s)	372, 541, 1498
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	2 cut(s)	539, 754
SduI	GDGCHC	2 cut(s)	22, 1251
SfaNI	GCATC	6 cut(s)	239, 565, 1066, 1402, 1598, 1718
SfcI	CTRYAG	1 cut(s)	1423
Sfr303I	CCGCGG	1 cut(s)	406
SfuI	TTCGAA	1 cut(s)	1393
SgrBI	CCGCGG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	7 cut(s)	486, 534, 670, 1110, 1155, 1303, 1651
SseBI	AGGCCT	1 cut(s)	1188
SsiI	CCGC	8 cut(s)	327, 400, 403, 405, 408, 420, 902, 1031
SspMI	CTAG	2 cut(s)	15, 167
SstI	GAGCTC	1 cut(s)	1251
StuI	AGGCCT	1 cut(s)	1188
StyI	CCWWGG	2 cut(s)	1557, 1751
TaaI	ACNGT	2 cut(s)	784, 1104
TaqI	TCGA	6 cut(s)	581, 648, 1205, 1251, 1393, 1410
TasI	AATT	7 cut(s)	486, 534, 670, 1110, 1155, 1303, 1651
TauI	GCSGC	4 cut(s)	402, 405, 408, 422
TfiI	GAWTC	3 cut(s)	347, 694, 907
Tru1I	TTAA	7 cut(s)	135, 936, 1062, 1166, 1212, 1263, 1650
Tru9I	TTAA	7 cut(s)	135, 936, 1062, 1166, 1212, 1263, 1650
TscAI	CASTG	5 cut(s)	298, 846, 1224, 1329, 1618
TseFI	GTSAC	2 cut(s)	58, 1487
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	58, 1487
TspDTI	ATGAA	8 cut(s)	373, 666, 686, 899, 1100, 1151, 1302, 1610
TspRI	CASTG	5 cut(s)	298, 846, 1224, 1329, 1618
Van91I	CCANNNNNTGG	1 cut(s)	429
VspI	ATTAAT	1 cut(s)	1263
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	1390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1720
XmiI	GTMKAC	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	2 cut(s)	15, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.