Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g18940 FvH4_6g18941 |
| malus_domestica | MD08G1069200.v1.1 MD08G1069300.v1.1 MD15G1052800.v1.1 |
| prunus_persica | Prupe.1G406700_v2.0.a1 |
| pyrus_communis | pycom08g05700 pycom08g05710 pycom15g05050 |
| rosa_chinensis | RchiOBHm_Chr6g0311521 |
| rosa_laevigata | RLG00000010397 |
| rosa_multiflora | Rmu_co8085934.1_g000001 Rmu_sc0028020.1_g000001 Rmu_sc0035116.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00157540 |
| rosa_rugosa | Rorug06G0389400 |
| rosa_samantha | Rh6AG504200 Rh6AG504300 Rh6BG514900 Rh6CG520700 Rh6DG506700 Rh7DG318900 |
| rosa_wichuraiana | Rw6G043910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 400 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 1 cut(s) | 143 |
| AfaI | GTAC | 2 cut(s) | 38, 440 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 12 |
| AgsI | TTSAA | 2 cut(s) | 170, 302 |
| AluBI | AGCT | 3 cut(s) | 141, 181, 459 |
| AluI | AGCT | 3 cut(s) | 141, 181, 459 |
| Alw21I | GWGCWC | 1 cut(s) | 183 |
| AoxI | GGCC | 2 cut(s) | 3, 118 |
| AseI | ATTAAT | 1 cut(s) | 195 |
| AspLEI | GCGC | 2 cut(s) | 404, 488 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| AsuII | TTCGAA | 1 cut(s) | 325 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 183 |
| Bbv12I | GWGCWC | 1 cut(s) | 183 |
| BccI | CCATC | 2 cut(s) | 74, 380 |
| BclI | TGATCA | 1 cut(s) | 430 |
| BfmI | CTRYAG | 1 cut(s) | 355 |
| BfuAI | ACCTGC | 1 cut(s) | 400 |
| BmsI | GCATC | 2 cut(s) | 334, 530 |
| Bpu14I | TTCGAA | 1 cut(s) | 325 |
| BsaJI | CCNNGG | 2 cut(s) | 381, 489 |
| BsaWI | WCCGGW | 1 cut(s) | 76 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 12 |
| Bse1I | ACTGG | 1 cut(s) | 27 |
| Bse3DI | GCAATG | 1 cut(s) | 411 |
| BseDI | CCNNGG | 2 cut(s) | 381, 489 |
| BseGI | GGATG | 5 cut(s) | 21, 31, 85, 391, 522 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BseMI | GCAATG | 1 cut(s) | 411 |
| BseMII | CTCAG | 3 cut(s) | 146, 267, 501 |
| BseNI | ACTGG | 1 cut(s) | 27 |
| BshFI | GGCC | 2 cut(s) | 5, 120 |
| BsiHKAI | GWGCWC | 1 cut(s) | 183 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BsiWI | CGTACG | 1 cut(s) | 36 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 12 |
| BsnI | GGCC | 2 cut(s) | 5, 120 |
| Bsp119I | TTCGAA | 1 cut(s) | 325 |
| Bsp1286I | GDGCHC | 1 cut(s) | 183 |
| Bsp143I | GATC | 1 cut(s) | 430 |
| BspANI | GGCC | 2 cut(s) | 5, 120 |
| BspCNI | CTCAG | 3 cut(s) | 147, 266, 502 |
| BspMI | ACCTGC | 1 cut(s) | 400 |
| BspT104I | TTCGAA | 1 cut(s) | 325 |
| BsrDI | GCAATG | 1 cut(s) | 411 |
| BsrI | ACTGG | 1 cut(s) | 27 |
| BssECI | CCNNGG | 2 cut(s) | 381, 489 |
| BssMI | GATC | 1 cut(s) | 430 |
| BssT1I | CCWWGG | 1 cut(s) | 489 |
| BstBI | TTCGAA | 1 cut(s) | 325 |
| BstDEI | CTNAG | 3 cut(s) | 155, 253, 510 |
| BstF5I | GGATG | 5 cut(s) | 21, 31, 85, 391, 522 |
| BstHHI | GCGC | 2 cut(s) | 404, 488 |
| BstKTI | GATC | 1 cut(s) | 433 |
| BstMBI | GATC | 1 cut(s) | 430 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 344, 506 |
| BstNSI | RCATGY | 1 cut(s) | 322 |
| BstSFI | CTRYAG | 1 cut(s) | 355 |
| BsuRI | GGCC | 2 cut(s) | 5, 120 |
| BtsCI | GGATG | 5 cut(s) | 21, 31, 85, 391, 522 |
| BtsI | GCAGTG | 2 cut(s) | 156, 550 |
| BtsIMutI | CAGTG | 3 cut(s) | 156, 261, 550 |
| BveI | ACCTGC | 1 cut(s) | 400 |
| CfoI | GCGC | 2 cut(s) | 404, 488 |
| CseI | GACGC | 1 cut(s) | 431 |
| Csp6I | GTAC | 2 cut(s) | 37, 439 |
| CviAII | CATG | 3 cut(s) | 314, 319, 335 |
| CviQI | GTAC | 2 cut(s) | 37, 439 |
| DdeI | CTNAG | 3 cut(s) | 155, 253, 510 |
| DpnI | GATC | 1 cut(s) | 432 |
| DpnII | GATC | 1 cut(s) | 430 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Ecl136II | GAGCTC | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 1 cut(s) | 489 |
| Eco147I | AGGCCT | 1 cut(s) | 120 |
| Eco24I | GRGCYC | 1 cut(s) | 183 |
| Eco53kI | GAGCTC | 1 cut(s) | 181 |
| Eco57I | CTGAAG | 1 cut(s) | 143 |
| EcoICRI | GAGCTC | 1 cut(s) | 181 |
| EcoT14I | CCWWGG | 1 cut(s) | 489 |
| EcoT38I | GRGCYC | 1 cut(s) | 183 |
| ErhI | CCWWGG | 1 cut(s) | 489 |
| FaeI | CATG | 3 cut(s) | 317, 322, 338 |
| FatI | CATG | 3 cut(s) | 313, 318, 334 |
| FbaI | TGATCA | 1 cut(s) | 430 |
| FokI | GGATG | 5 cut(s) | 28, 38, 92, 398, 529 |
| FriOI | GRGCYC | 1 cut(s) | 183 |
| GlaI | GCGC | 2 cut(s) | 403, 487 |
| HaeIII | GGCC | 2 cut(s) | 5, 120 |
| HapII | CCGG | 1 cut(s) | 77 |
| HgaI | GACGC | 1 cut(s) | 431 |
| HhaI | GCGC | 2 cut(s) | 404, 488 |
| Hin1II | CATG | 3 cut(s) | 317, 322, 338 |
| Hin6I | GCGC | 2 cut(s) | 402, 486 |
| HinP1I | GCGC | 2 cut(s) | 402, 486 |
| HpaII | CCGG | 1 cut(s) | 77 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 2 cut(s) | 382, 435 |
| Hpy188III | TCNNGA | 1 cut(s) | 167 |
| HpyAV | CCTTC | 2 cut(s) | 296, 490 |
| HpyCH4V | TGCA | 3 cut(s) | 149, 409, 543 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 344, 506 |
| HpyF3I | CTNAG | 3 cut(s) | 155, 253, 510 |
| Hsp92II | CATG | 3 cut(s) | 317, 322, 338 |
| HspAI | GCGC | 2 cut(s) | 402, 486 |
| Ksp22I | TGATCA | 1 cut(s) | 430 |
| Kzo9I | GATC | 1 cut(s) | 430 |
| LmnI | GCTCC | 2 cut(s) | 83, 178 |
| LpnPI | CCDG | 5 cut(s) | 8, 19, 90, 134, 395 |
| LweI | GCATC | 2 cut(s) | 334, 530 |
| MaeIII | GTNAC | 1 cut(s) | 419 |
| MalI | GATC | 1 cut(s) | 432 |
| MboI | GATC | 1 cut(s) | 430 |
| MboII | GAAGA | 1 cut(s) | 155 |
| MhlI | GDGCHC | 1 cut(s) | 183 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 3 cut(s) | 42, 87, 235 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MnlI | CCTC | 8 cut(s) | 60, 110, 275, 376, 429, 499, 507, 517 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 3 cut(s) | 98, 144, 195 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 344, 506 |
| NdeII | GATC | 1 cut(s) | 430 |
| NlaIII | CATG | 3 cut(s) | 317, 322, 338 |
| NmuCI | GTSAC | 1 cut(s) | 419 |
| NspI | RCATGY | 1 cut(s) | 322 |
| NspV | TTCGAA | 1 cut(s) | 325 |
| PceI | AGGCCT | 1 cut(s) | 120 |
| Pfl23II | CGTACG | 1 cut(s) | 36 |
| PshBI | ATTAAT | 1 cut(s) | 195 |
| Psp124BI | GAGCTC | 1 cut(s) | 183 |
| PspLI | CGTACG | 1 cut(s) | 36 |
| RsaI | GTAC | 2 cut(s) | 38, 440 |
| RsaNI | GTAC | 2 cut(s) | 37, 439 |
| SacI | GAGCTC | 1 cut(s) | 183 |
| SaqAI | TTAA | 3 cut(s) | 98, 144, 195 |
| Sau3AI | GATC | 1 cut(s) | 430 |
| SduI | GDGCHC | 1 cut(s) | 183 |
| SetI | ASST | 8 cut(s) | 143, 183, 286, 376, 414, 440, 461, 576 |
| SfaNI | GCATC | 2 cut(s) | 334, 530 |
| SfcI | CTRYAG | 1 cut(s) | 355 |
| SfuI | TTCGAA | 1 cut(s) | 325 |
| Sse9I | AATT | 3 cut(s) | 42, 87, 235 |
| SseBI | AGGCCT | 1 cut(s) | 120 |
| SstI | GAGCTC | 1 cut(s) | 183 |
| StuI | AGGCCT | 1 cut(s) | 120 |
| StyI | CCWWGG | 1 cut(s) | 489 |
| TaqI | TCGA | 3 cut(s) | 137, 183, 325 |
| TasI | AATT | 3 cut(s) | 42, 87, 235 |
| Tru1I | TTAA | 3 cut(s) | 98, 144, 195 |
| Tru9I | TTAA | 3 cut(s) | 98, 144, 195 |
| TscAI | CASTG | 3 cut(s) | 156, 261, 550 |
| TseFI | GTSAC | 1 cut(s) | 419 |
| Tsp45I | GTSAC | 1 cut(s) | 419 |
| TspDTI | ATGAA | 3 cut(s) | 32, 234, 542 |
| TspGWI | ACGGA | 1 cut(s) | 54 |
| TspRI | CASTG | 3 cut(s) | 156, 261, 550 |
| VspI | ATTAAT | 1 cut(s) | 195 |
| XceI | RCATGY | 1 cut(s) | 322 |