pycom08g05700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0008873
Physical Location & Seq
Reverse (-)
4329283 .. 4330392
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g05700.1

Sequence Viewer

Length: 1053 bp
ATGTTTAATGAAATGATTTGTGAGCCAAATGTGATTACTTATAATACCATGATTCATGGGTTTTTTAAGATTGGTGATATTGATAGTGCAAGGAGCGTTTTGGTTCGGATGACAGAGAGTAGGGATTGCTTGCCTGATAGGATAACTTGTACAATATTGATTGATGGGTATTGTAAGAAAGGCAAGTTGGAGGAGGCGATGAAGTGTATGTATGAAATGGAGAAGCATGGTTGTGAGCCAAATGTGATCACTTATAGTACCATGATTCACGGGTTTTGTAGGAAGGGTGATTTTGATAGTGCAGGGAGAGTTTTGGGCCGGATGAGGGAGAGTAAGGATTGCTTGCCTGATTTGGTAACTTATACAACTTTGATTGATGGGTATTGCAAGAAAGGCGAGTTGGAGAAGGTGATGAAGTGCATGGGTGAAATGGAGAAACTGGGCTGTGAGCCTAATCTGTTCAGTTGCAATGCTCTGATTCATGCTTTGTGTTTGAGTGGGCACATTGGTGAGGCGAAGGAGATGGTGACAAAGATGAGATTACATGGTGTGGAGGACGATATAGTAACACACATGACTATCTTGAAAGGGCCTTACATTGAGGGGAGGCCAGATGCCGCTGCTAAACATCTTAAAGATATAGTGAACCTTGGGATGAAACCGGAAGTGGCATATGTGGTGATTTTTAATGAGTACTTCCTAGAGCTGAGTGTTTCATGCTTTAATAGAGTACTCACAGTTCATGTTGAAAATGGGGAACCTGAAAGAGCTATTTTTCTTCTAAAGGAAATGCGTCGAATGGGTTGCTTTCCGAATTTCTTTTTGTATAACACAGTGATATGCAGTCTTTGTGATATGAGAGGTAGAATGGGGGAAGTTGAAGAGCTTGTTTGTGACATGCTTGGGAATGGTCACGAGCTTCGTACCAACCTCTACGGTTGCATAATTAAGGGTTATTGCGAAGATGGCAATGTGAATATGGCAGTGCAGACTGTCTGTGGAGCTCTGGATAACAATAACATTTTGGAAACTTTAACGAAAAGCTCCCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

351

Amino Acids

39.52

Weight (kDa)

5.65

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 7 - 37 1.8e-10 PPR repeat
PPR_2 PF13041 9 - 58 1.3e-13 PPR repeat family
PPR PF01535 12 - 40 8.5e-06 PPR repeat
PPR_1 PF12854 42 - 74 3.6e-09 PPR repeat
PPR_3 PF13812 43 - 90 8.5e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 45 - 94 1e-20 PPR repeat family
PPR PF01535 48 - 78 1.6e-09 PPR repeat
PPR_long PF17177 62 - 144 1.6e-08 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 76 - 109 1.5e-13 PPR repeat
PPR_2 PF13041 82 - 130 2.4e-14 PPR repeat family
PPR PF01535 83 - 111 5.9e-07 PPR repeat
PPR_1 PF12854 112 - 145 8.2e-11 PPR repeat
PPR_3 PF13812 112 - 162 7.7e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 116 - 164 4.9e-17 PPR repeat family
PPR PF01535 119 - 149 8e-10 PPR repeat
PPR_1 PF12854 148 - 180 4.7e-07 PPR repeat
PPR_2 PF13041 151 - 197 5.1e-07 PPR repeat family
PPR_2 PF13041 237 - 285 2.4e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AciI CCGC 1 cut(s) 618
AcsI RAATTY 1 cut(s) 814
AfaI GTAC 5 cut(s) 151, 259, 695, 732, 925
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 3 cut(s) 586, 749, 881
AjuI GAANNNNNNNTTGG 4 cut(s) 170, 202, 383, 415
AleI CACNNNNGTG 1 cut(s) 507
AluBI AGCT 6 cut(s) 706, 770, 886, 919, 1004, 1044
AluI AGCT 6 cut(s) 706, 770, 886, 919, 1004, 1044
Alw21I GWGCWC 1 cut(s) 1006
AoxI GGCC 3 cut(s) 316, 590, 608
ApeKI GCWGC 1 cut(s) 620
ApoI RAATTY 1 cut(s) 814
AspS9I GGNCC 2 cut(s) 316, 590
AsuC2I CCSGG 1 cut(s) 1048
AsuHPI GGTGA 7 cut(s) 86, 299, 421, 437, 521, 538, 691
BaeGI GKGCMC 1 cut(s) 504
BanII GRGCYC 1 cut(s) 1006
BauI CACGAG 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 1 cut(s) 607
BccI CCATC 4 cut(s) 158, 371, 517, 959
BcgI CGANNNNNNTGC 2 cut(s) 786, 820
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 1048
BfaI CTAG 1 cut(s) 701
BisI GCNGC 2 cut(s) 618, 621
BlsI GCNGC 2 cut(s) 619, 622
BmcAI AGTACT 2 cut(s) 695, 732
Bme1390I CCNGG 1 cut(s) 1048
BmgT120I GGNCC 2 cut(s) 316, 590
BmiI GGNNCC 1 cut(s) 759
BmrFI CCNGG 1 cut(s) 1048
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 1048
BsaJI CCNNGG 1 cut(s) 649
BsaWI WCCGGW 1 cut(s) 661
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 444
Bse3DI GCAATG 2 cut(s) 475, 976
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 3 cut(s) 114, 327, 660
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 2 cut(s) 475, 976
BseMII CTCAG 1 cut(s) 698
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 1 cut(s) 206
BseSI GKGCMC 1 cut(s) 504
BseXI GCAGC 1 cut(s) 607
BsgI GTGCAG 2 cut(s) 321, 1007
BshFI GGCC 3 cut(s) 318, 592, 610
BsiHKAI GWGCWC 1 cut(s) 1006
BsiSI CCGG 3 cut(s) 319, 662, 1048
BslI CCNNNNNNNGG 1 cut(s) 325
BsnI GGCC 3 cut(s) 318, 592, 610
Bsp1286I GDGCHC 2 cut(s) 504, 1006
Bsp1407I TGTACA 1 cut(s) 149
Bsp143I GATC 1 cut(s) 246
BspACI CCGC 1 cut(s) 618
BspANI GGCC 3 cut(s) 318, 592, 610
BspCNI CTCAG 1 cut(s) 699
BspLI GGNNCC 1 cut(s) 759
BspQI GCTCTTC 1 cut(s) 876
BsrDI GCAATG 2 cut(s) 475, 976
BsrGI TGTACA 1 cut(s) 149
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 1 cut(s) 246
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 1 cut(s) 649
Bst2BI CACGAG 1 cut(s) 914
Bst4CI ACNGT 4 cut(s) 739, 835, 938, 994
Bst6I CTCTTC 1 cut(s) 876
BstAUI TGTACA 1 cut(s) 149
BstC8I GCNNGC 2 cut(s) 131, 344
BstDEI CTNAG 1 cut(s) 707
BstF5I GGATG 3 cut(s) 114, 327, 660
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 393, 966
BstNSI RCATGY 1 cut(s) 901
BstSCI CCNGG 1 cut(s) 1046
BstSLI GKGCMC 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 607
BsuRI GGCC 3 cut(s) 318, 592, 610
BtgZI GCGATG 1 cut(s) 212
BtsCI GGATG 3 cut(s) 114, 327, 660
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 2 cut(s) 840, 990
Cac8I GCNNGC 2 cut(s) 131, 344
Cfr13I GGNCC 2 cut(s) 316, 590
CseI GACGC 1 cut(s) 782
Csp6I GTAC 5 cut(s) 150, 258, 694, 731, 924
CviQI GTAC 5 cut(s) 150, 258, 694, 731, 924
DdeI CTNAG 1 cut(s) 707
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 876
EarI CTCTTC 1 cut(s) 876
Ecl136II GAGCTC 1 cut(s) 1004
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 1006
Eco53kI GAGCTC 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 1004
EcoO109I RGGNCCY 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 649
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FauNDI CATATG 1 cut(s) 673
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 618, 621
FokI GGATG 3 cut(s) 121, 334, 667
FriOI GRGCYC 1 cut(s) 1006
Fsp4HI GCNGC 2 cut(s) 618, 621
FspBI CTAG 1 cut(s) 701
GluI GCNGC 2 cut(s) 618, 621
HaeIII GGCC 3 cut(s) 318, 592, 610
HapII CCGG 3 cut(s) 319, 662, 1048
HgaI GACGC 1 cut(s) 782
HinfI GANTC 3 cut(s) 52, 265, 478
HpaII CCGG 3 cut(s) 319, 662, 1048
HphI GGTGA 7 cut(s) 86, 299, 421, 437, 521, 538, 691
Hpy166II GTNNAC 1 cut(s) 646
Hpy188I TCNGA 3 cut(s) 108, 477, 813
Hpy188III TCNNGA 3 cut(s) 583, 914, 1007
Hpy8I GTNNAC 1 cut(s) 646
Hpy99I CGWCG 1 cut(s) 798
HpyAV CCTTC 3 cut(s) 277, 400, 511
HpyCH4III ACNGT 4 cut(s) 739, 835, 938, 994
HpyCH4V TGCA 8 cut(s) 89, 302, 387, 420, 468, 843, 942, 988
HpyF10VI GCNNNNNNNGC 2 cut(s) 393, 966
HpyF3I CTNAG 1 cut(s) 707
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 876
LmnI GCTCC 3 cut(s) 93, 1001, 1049
LpnPI CCDG 9 cut(s) 147, 288, 332, 360, 425, 624, 675, 774, 992
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 1 cut(s) 604
MaeI CTAG 1 cut(s) 701
MaeIII GTNAC 5 cut(s) 355, 526, 565, 893, 911
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 3 cut(s) 770, 893, 974
MhlI GDGCHC 2 cut(s) 504, 1006
MluCI AATT 2 cut(s) 814, 945
MmeI TCCRAC 2 cut(s) 168, 381
MnlI CCTC 9 cut(s) 184, 187, 318, 505, 547, 595, 600, 854, 941
MseI TTAA 7 cut(s) 6, 66, 633, 687, 723, 948, 1034
MslI CAYNNNNRTG 2 cut(s) 231, 507
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 3 cut(s) 319, 662, 1048
MspR9I CCNGG 1 cut(s) 1048
MwoI GCNNNNNNNGC 2 cut(s) 393, 966
NciI CCSGG 1 cut(s) 1048
NdeI CATATG 1 cut(s) 673
NdeII GATC 1 cut(s) 246
NlaIV GGNNCC 1 cut(s) 759
NmuCI GTSAC 3 cut(s) 526, 893, 911
NspI RCATGY 1 cut(s) 901
OliI CACNNNNGTG 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 876
PfeI GAWTC 3 cut(s) 52, 265, 478
PkrI GCNGC 2 cut(s) 619, 622
PsiI TTATAA 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 1006
PspN4I GGNNCC 1 cut(s) 759
PspPI GGNCC 2 cut(s) 316, 590
PsrI GAACNNNNNNTAC 2 cut(s) 723, 755
RsaI GTAC 5 cut(s) 151, 259, 695, 732, 925
RsaNI GTAC 5 cut(s) 150, 258, 694, 731, 924
RseI CAYNNNNRTG 2 cut(s) 231, 507
SacI GAGCTC 1 cut(s) 1006
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 7 cut(s) 6, 66, 633, 687, 723, 948, 1034
SatI GCNGC 2 cut(s) 618, 621
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 2 cut(s) 316, 590
ScaI AGTACT 2 cut(s) 695, 732
ScrFI CCNGG 1 cut(s) 1048
SduI GDGCHC 2 cut(s) 504, 1006
SfaNI GCATC 1 cut(s) 604
SmiMI CAYNNNNRTG 2 cut(s) 231, 507
Sse9I AATT 2 cut(s) 814, 945
SsiI CCGC 1 cut(s) 618
SspI AATATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 701
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 1 cut(s) 1046
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 4 cut(s) 739, 835, 938, 994
TaqI TCGA 1 cut(s) 796
TasI AATT 2 cut(s) 814, 945
TatI WGTACW 3 cut(s) 149, 693, 730
TauI GCSGC 1 cut(s) 620
TfiI GAWTC 3 cut(s) 52, 265, 478
Tru1I TTAA 7 cut(s) 6, 66, 633, 687, 723, 948, 1034
Tru9I TTAA 7 cut(s) 6, 66, 633, 687, 723, 948, 1034
TscAI CASTG 2 cut(s) 840, 990
TseFI GTSAC 3 cut(s) 526, 893, 911
TseI GCWGC 1 cut(s) 620
Tsp45I GTSAC 3 cut(s) 526, 893, 911
TspDTI ATGAA 9 cut(s) 24, 44, 215, 228, 428, 470, 671, 705, 731
TspRI CASTG 2 cut(s) 840, 990
XapI RAATTY 1 cut(s) 814
XceI RCATGY 1 cut(s) 901
XspI CTAG 1 cut(s) 701
ZrmI AGTACT 2 cut(s) 695, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.