Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035116.1

Orthogroup ID

OG0008873

Physical Location & Seq

Genomic Coordinates Reverse (-)

2198 .. 4874

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035116.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

atgattcatgggttctgcaagaagggtgaggttgatagcgcgaggagagttttgggtcagatgatggagggtaaggattgcttgcctgatacggtaacttatacaactttgattgatgggtatagtaagaaaggtgagttgggcgaggcaatgaagtgtatggatgagatggtgaaacagggttgtgagcctaatgtgttgacttacaatgctgtgattcatggtttttgtttgagtgggaatgttaatgaggcaaagaggatgatgacgaggatgaggttgaatggtgtgaaggatgatatagcgacgcatacgagtatattgaaagggctttgcattgcggggaaggctgacgaagctgttgagcatcttaaagagatggccagacttgggatgaaactggatgtgaaaccgtatggaattgttgtcaatgagtattgtaagatgaaagaaccggatggagcaattttgcttttaatggaaatgagaatgagaggcctgaagccaagtgtttctagctttaatgcagtgctgagtgttcttcttgaaaatggggagctcgaaagagccattaatcttgtaaagcaaatgccacaaatgggttgctttcccaatttcttttcatacaactcagtgatatgtagtctttgtaatgtgagagttagaatgggggaagttgaagggcttatccatgacatgcttcgaaatggtcatgcccttgatgccacgctctgtagttgcttggtcaaaggttattgcgaggatggtgatttgagaagcgcaatgcaggttttctgtgacgcacttgatcagaggtacattattagtttggagagcttttcagttttcgtcaaagagttatgcgccaaggggaaggctgttgaggctgagaggatgtttgaggatatgtgtaaaagatgcagtgtggttcatatagatatttacagaaaggtgttagatgattatgtcgagcagtgggaagttaatttgccagcagaggaggttcctccagagcttccagaaccaacacttggtatcaactttgccagagatgggatgcaaaagatggactgcagaatttctaaagggatattgaaaatatatctatataacagtctcctctccctcgacgattcctccagtcacttgctcaccgttgagatcagcaacctcggtgcctatcaaacctttggcaaagaccgctcccggagcgcctggcagcacttttggctatggcttctcaaatttcaacaaattgccgcctccttcacctccgtcaccattccttcgtcgccgtcatccgcactgcgaaccgccttgcttaattcgcctgtcgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

446

Amino Acids

49.95

Weight (kDa)

5.93

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008873)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18940 FvH4_6g18941
malus_domestica	MD08G1069200.v1.1 MD08G1069300.v1.1 MD15G1052800.v1.1
prunus_persica	Prupe.1G406700_v2.0.a1
pyrus_communis	pycom08g05700 pycom08g05710 pycom15g05050
rosa_chinensis	RchiOBHm_Chr6g0311521
rosa_laevigata	RLG00000010397
rosa_multiflora	Rmu_co8085934.1_g000001 Rmu_sc0028020.1_g000001 Rmu_sc0035116.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157540
rosa_rugosa	Rorug06G0389400
rosa_samantha	Rh6AG504200 Rh6AG504300 Rh6BG514900 Rh6CG520700 Rh6DG506700 Rh7DG318900
rosa_wichuraiana	Rw6G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	1175
AccB7I	CCANNNNNTGG	1 cut(s)	1031
AccBSI	CCGCTC	1 cut(s)	1203
AccI	GTMKAC	1 cut(s)	1335
AccII	CGCG	1 cut(s)	41
AciI	CCGC	5 cut(s)	341, 1201, 1260, 1302, 1314
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	2 cut(s)	1077, 1244
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	1 cut(s)	818
AfiI	CCNNNNNNNGG	4 cut(s)	390, 599, 1031, 1053
AgsI	TTSAA	6 cut(s)	283, 325, 548, 680, 1096, 1250
AjnI	CCWGG	1 cut(s)	1214
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 1014, 1046
AluBI	AGCT	5 cut(s)	359, 519, 559, 837, 1015
AluI	AGCT	5 cut(s)	359, 519, 559, 837, 1015
Alw21I	GWGCWC	1 cut(s)	561
Alw26I	GTCTC	1 cut(s)	1121
AoxI	GGCC	2 cut(s)	381, 496
ApeKI	GCWGC	1 cut(s)	1219
ApoI	RAATTY	2 cut(s)	1077, 1244
AseI	ATTAAT	1 cut(s)	573
AspLEI	GCGC	4 cut(s)	41, 782, 866, 1214
AsuC2I	CCSGG	1 cut(s)	1207
AsuHPI	GGTGA	7 cut(s)	38, 146, 184, 779, 1144, 1261, 1270
AsuII	TTCGAA	1 cut(s)	703
BalI	TGGCCA	1 cut(s)	383
BanI	GGYRCC	1 cut(s)	1175
BanII	GRGCYC	1 cut(s)	561
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	1231
BccI	CCATC	8 cut(s)	58, 110, 163, 373, 452, 758, 1046, 1060
BceAI	ACGGC	1 cut(s)	1279
BciT130I	CCWGG	1 cut(s)	1216
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	1207
BcoDI	GTCTC	1 cut(s)	1121
BfaI	CTAG	2 cut(s)	516, 1339
BfmI	CTRYAG	2 cut(s)	733, 1072
BfoI	RGCGCY	1 cut(s)	1215
BfuAI	ACCTGC	1 cut(s)	778
BisI	GCNGC	2 cut(s)	1220, 1260
BlsI	GCNGC	2 cut(s)	1221, 1261
Bme1390I	CCNGG	2 cut(s)	1207, 1216
BmiI	GGNNCC	2 cut(s)	1005, 1177
BmrFI	CCNGG	2 cut(s)	1207, 1216
BmsI	GCATC	4 cut(s)	376, 712, 908, 1047
BpmI	CTGGAG	2 cut(s)	993, 1123
Bpu14I	TTCGAA	1 cut(s)	703
BpuMI	CCSGG	1 cut(s)	1207
BsaJI	CCNNGG	2 cut(s)	867, 1171
BsaWI	WCCGGW	1 cut(s)	454
BsaXI	ACNNNNNCTCC	2 cut(s)	1121, 1151
Bsc4I	CCNNNNNNNGG	4 cut(s)	390, 599, 1031, 1053
Bse1I	ACTGG	2 cut(s)	405, 1140
Bse3DI	GCAATG	3 cut(s)	156, 336, 789
BseBI	CCWGG	1 cut(s)	1216
BseDI	CCNNGG	2 cut(s)	867, 1171
BseLI	CCNNNNNNNGG	4 cut(s)	390, 599, 1031, 1053
BseMI	GCAATG	3 cut(s)	156, 336, 789
BseMII	CTCAG	3 cut(s)	524, 645, 879
BseNI	ACTGG	2 cut(s)	405, 1140
BseRI	GAGGAG	3 cut(s)	58, 1013, 1109
BseXI	GCAGC	1 cut(s)	1231
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	383, 498
BshNI	GGYRCC	1 cut(s)	1175
BsiHKAI	GWGCWC	1 cut(s)	561
BsiSI	CCGG	2 cut(s)	455, 1207
BslI	CCNNNNNNNGG	4 cut(s)	390, 599, 1031, 1053
BsmAI	GTCTC	1 cut(s)	1121
BsnI	GGCC	2 cut(s)	383, 498
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	2 cut(s)	808, 1161
BspACI	CCGC	5 cut(s)	341, 1201, 1260, 1302, 1314
BspANI	GGCC	2 cut(s)	383, 498
BspCNI	CTCAG	3 cut(s)	525, 644, 880
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	1005, 1177
BspMAI	CTGCAG	1 cut(s)	1076
BspMI	ACCTGC	1 cut(s)	778
BspT104I	TTCGAA	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	1175
BsrBI	CCGCTC	1 cut(s)	1203
BsrDI	GCAATG	3 cut(s)	156, 336, 789
BsrI	ACTGG	2 cut(s)	405, 1140
BssECI	CCNNGG	2 cut(s)	867, 1171
BssMI	GATC	2 cut(s)	808, 1161
BssT1I	CCWWGG	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	1216
Bst4CI	ACNGT	4 cut(s)	94, 414, 1115, 1156
BstBI	TTCGAA	1 cut(s)	703
BstC8I	GCNNGC	2 cut(s)	83, 993
BstDEI	CTNAG	3 cut(s)	533, 631, 888
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	1215
BstHHI	GCGC	4 cut(s)	41, 782, 866, 1214
BstKTI	GATC	2 cut(s)	811, 1164
BstMAI	GTCTC	1 cut(s)	1121
BstMBI	GATC	2 cut(s)	808, 1161
BstMWI	GCNNNNNNNGC	8 cut(s)	347, 356, 722, 884, 1200, 1209, 1228, 1327
BstNI	CCWGG	1 cut(s)	1216
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	2 cut(s)	1205, 1214
BstSFI	CTRYAG	2 cut(s)	733, 1072
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	1231
BsuRI	GGCC	2 cut(s)	383, 498
BtsI	GCAGTG	4 cut(s)	534, 928, 980, 1304
BtsIMutI	CAGTG	5 cut(s)	534, 639, 928, 980, 1304
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	2 cut(s)	83, 993
CfoI	GCGC	4 cut(s)	41, 782, 866, 1214
CseI	GACGC	2 cut(s)	316, 809
Csp6I	GTAC	1 cut(s)	817
CviAII	CATG	5 cut(s)	8, 221, 692, 697, 713
CviQI	GTAC	1 cut(s)	817
DdeI	CTNAG	3 cut(s)	533, 631, 888
DpnI	GATC	2 cut(s)	810, 1163
DpnII	GATC	2 cut(s)	808, 1161
EaeI	YGGCCR	1 cut(s)	381
Ecl136II	GAGCTC	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	561
Eco53kI	GAGCTC	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	521
EcoICRI	GAGCTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	1214
EcoT14I	CCWWGG	1 cut(s)	867
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	867
FaeI	CATG	5 cut(s)	11, 224, 695, 700, 716
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	5 cut(s)	7, 220, 691, 696, 712
FauI	CCCGC	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	1335
Fnu4HI	GCNGC	2 cut(s)	1220, 1260
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	2 cut(s)	1220, 1260
FspBI	CTAG	2 cut(s)	516, 1339
GlaI	GCGC	4 cut(s)	40, 781, 865, 1213
GluI	GCNGC	2 cut(s)	1220, 1260
GsuI	CTGGAG	2 cut(s)	993, 1123
HaeII	RGCGCY	1 cut(s)	1215
HaeIII	GGCC	2 cut(s)	383, 498
HapII	CCGG	2 cut(s)	455, 1207
HgaI	GACGC	2 cut(s)	316, 809
HhaI	GCGC	4 cut(s)	41, 782, 866, 1214
Hin1II	CATG	5 cut(s)	11, 224, 695, 700, 716
Hin6I	GCGC	4 cut(s)	39, 780, 864, 1212
HinP1I	GCGC	4 cut(s)	39, 780, 864, 1212
HincII	GTYRAC	2 cut(s)	201, 1336
HindII	GTYRAC	2 cut(s)	201, 1336
HinfI	GANTC	3 cut(s)	4, 217, 1133
HpaII	CCGG	2 cut(s)	455, 1207
HphI	GGTGA	7 cut(s)	38, 146, 184, 779, 1144, 1261, 1270
Hpy166II	GTNNAC	2 cut(s)	201, 1336
Hpy188I	TCNGA	2 cut(s)	60, 813
Hpy188III	TCNNGA	3 cut(s)	545, 1010, 1019
Hpy8I	GTNNAC	2 cut(s)	201, 1336
Hpy99I	CGWCG	3 cut(s)	310, 1133, 1294
HpyAV	CCTTC	7 cut(s)	16, 286, 340, 674, 868, 1276, 1296
HpyCH4III	ACNGT	4 cut(s)	94, 414, 1115, 1156
HpyCH4V	TGCA	7 cut(s)	18, 336, 527, 787, 921, 1060, 1074
HpyF10VI	GCNNNNNNNGC	8 cut(s)	347, 356, 722, 884, 1200, 1209, 1228, 1327
HpyF3I	CTNAG	3 cut(s)	533, 631, 888
Hsp92II	CATG	5 cut(s)	11, 224, 695, 700, 716
HspAI	GCGC	4 cut(s)	39, 780, 864, 1212
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	2 cut(s)	808, 1161
LmnI	GCTCC	4 cut(s)	461, 556, 1208, 1209
Lsp1109I	GCAGC	1 cut(s)	1231
LweI	GCATC	4 cut(s)	376, 712, 908, 1047
MaeI	CTAG	2 cut(s)	516, 1339
MaeIII	GTNAC	4 cut(s)	94, 797, 1142, 1276
MalI	GATC	2 cut(s)	810, 1163
MbiI	CCGCTC	1 cut(s)	1203
MboI	GATC	2 cut(s)	808, 1161
MboII	GAAGA	1 cut(s)	533
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	8 cut(s)	420, 465, 613, 985, 1077, 1244, 1254, 1324
MluNI	TGGCCA	1 cut(s)	383
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	7 cut(s)	246, 372, 476, 522, 573, 984, 1323
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	2 cut(s)	455, 1207
MspR9I	CCNGG	2 cut(s)	1207, 1216
MvaI	CCWGG	1 cut(s)	1216
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	8 cut(s)	347, 356, 722, 884, 1200, 1209, 1228, 1327
NciI	CCSGG	1 cut(s)	1207
NdeII	GATC	2 cut(s)	808, 1161
NlaIII	CATG	5 cut(s)	11, 224, 695, 700, 716
NlaIV	GGNNCC	2 cut(s)	1005, 1177
NmuCI	GTSAC	3 cut(s)	797, 1142, 1276
NspI	RCATGY	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	703
PceI	AGGCCT	1 cut(s)	498
PfeI	GAWTC	3 cut(s)	4, 217, 1133
PflMI	CCANNNNNTGG	1 cut(s)	1031
PfoI	TCCNGGA	1 cut(s)	1205
PkrI	GCNGC	2 cut(s)	1221, 1261
PshBI	ATTAAT	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	561
Psp6I	CCWGG	1 cut(s)	1214
PspGI	CCWGG	1 cut(s)	1214
PspN4I	GGNNCC	2 cut(s)	1005, 1177
PstI	CTGCAG	1 cut(s)	1076
RsaI	GTAC	1 cut(s)	818
RsaNI	GTAC	1 cut(s)	817
SacI	GAGCTC	1 cut(s)	561
SalI	GTCGAC	1 cut(s)	1334
SaqAI	TTAA	7 cut(s)	246, 372, 476, 522, 573, 984, 1323
SatI	GCNGC	2 cut(s)	1220, 1260
Sau3AI	GATC	2 cut(s)	808, 1161
ScrFI	CCNGG	2 cut(s)	1207, 1216
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	4 cut(s)	376, 712, 908, 1047
SfcI	CTRYAG	2 cut(s)	733, 1072
SfuI	TTCGAA	1 cut(s)	703
Sse9I	AATT	8 cut(s)	420, 465, 613, 985, 1077, 1244, 1254, 1324
SseBI	AGGCCT	1 cut(s)	498
SsiI	CCGC	5 cut(s)	341, 1201, 1260, 1302, 1314
SspMI	CTAG	2 cut(s)	516, 1339
SstI	GAGCTC	1 cut(s)	561
StuI	AGGCCT	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	1205, 1214
StyI	CCWWGG	1 cut(s)	867
TaaI	ACNGT	4 cut(s)	94, 414, 1115, 1156
TaqI	TCGA	5 cut(s)	561, 703, 969, 1128, 1335
TasI	AATT	8 cut(s)	420, 465, 613, 985, 1077, 1244, 1254, 1324
TauI	GCSGC	1 cut(s)	1262
TfiI	GAWTC	3 cut(s)	4, 217, 1133
Tru1I	TTAA	7 cut(s)	246, 372, 476, 522, 573, 984, 1323
Tru9I	TTAA	7 cut(s)	246, 372, 476, 522, 573, 984, 1323
TscAI	CASTG	5 cut(s)	534, 639, 928, 980, 1311
TseFI	GTSAC	3 cut(s)	797, 1142, 1276
TseI	GCWGC	1 cut(s)	1219
Tsp45I	GTSAC	3 cut(s)	797, 1142, 1276
TspDTI	ATGAA	6 cut(s)	167, 209, 410, 461, 612, 920
TspGWI	ACGGA	1 cut(s)	1264
TspRI	CASTG	5 cut(s)	534, 639, 928, 980, 1311
Van91I	CCANNNNNTGG	1 cut(s)	1031
VspI	ATTAAT	1 cut(s)	573
XapI	RAATTY	2 cut(s)	1077, 1244
XceI	RCATGY	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	1335
XspI	CTAG	2 cut(s)	516, 1339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.