Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008873

Physical Location & Seq

Genomic Coordinates Forward (+)

35704536 .. 35707716

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G406700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGCTACGCCAGCTAGAGCCCTAACCAACCCATCTCACCCCTCTACAAATCTCTCTCTGTTGACCTGTATAACCTCCCTTCTGCAAACCCTAGATCCACAAAACCCTAACCCCTCAAACCTCAGCTCAGCCCCCCTTAACCAATTCTCACCTCACCTGAACCCAAGCCTAGTTATCCAAGTCATCAAATCTCAGCCCAATCCTTACCATGCCCTCTTCTTCTTCAAATGGTCCTCAAACCCGGATCCTAATCCCAACAACTATTCTCACACCCACAACTGCTACTTGGCAATCACTGAGCTTCTTCTCTCCCACTCCCTCTTCTCCACTGCCTCCTCACTCCTTCAAGAATCCAATAGACTCTATGATTTTATGCTTGGCAGGTTCATCACAACTCATGGCCGCCGCGGCGATATCAGAGCCGCCATAGATTGGTTTTACAAGGCGAAGTCGATTGAGAACGGGCGGTGCTTGTTTTCTTATAATGCGATTCTGGGTGTGCTGGTTAGGGCTAATAGAATGAATTTAGCTAAGGCAATTTATGATCAGATTGTCAAGGAAGCTCAGGTAAATCCGAATGTATGGGCTTGTACAATAATGATTAGAGGGTTTTGCAAAAGGGGTGAAATTGAGAATGCCAAGAAGGTGTTTGATGAAATGACTTGCGAGCCAAATTTGATTACTTACAACACTATGATTCATGGGTTTTGTCTAAAGGGTGATTTTGATAGTGCGAGGAGAGTTTTCGGTCAGATGAGGGAGAGTGAGCATTGTTTGCCTGATACGGTAACGTATACAACTTTGATTGATGGGTATTGTAAGAAAGGTGAGTTGAAGGAGGCAATGGAGTGTATGAAAGAAATGGGGAAGCAGGGTTGTGAGCCTAATCTGTTTACTTACAATGCGTTGATTCATGGTTTCTGTTTGAGTGGTCATGTTAGTGAGGCAAAGAGGATGTTGACAAGGATGAGGTTAAATGGTGTGAAGGACAATATAGCTACACATACGGCCATATTGAAAGGGCTTTGCATTGTTGGAAAGGCCGACGAAGCTGTTAAGCATCTTCAAGATATAGTGAATCTTGGGATGAAACCGGATGTGGAAGCATATGGTGTCGTTTTTAATGAGTACTGTAAGATGAGAAAACCGGATGGAGCGATGTCCATTTTGAGGGAAATGAGGATGAGAGGCCTAAAGCCAAGTGTTTCAAGCTTTAACAGACTGCTCAAGGTTCTTGTCGAAAACGGGGACCTTGAAAGAGCCATTATTCTTCTAAATAAGATGAACCAAATGGGCTGCTCTCCAAATTTCTTTTCATATAACACAGTGATATGTAGTCTTTGTAATTTGAGAGGTAGAATGGGGGAGGTTGAAGAGTTCGTTGGTGACATGCTTTGGAACGGCCACAAGCTTGATACCGTCCTCTACAGTTGTGTAATTATGGGTTATTGTGAGGACGGCAATGTGAACATGGCAATACAGGCTTTCTGTGGAGCATTGGATAATAATCATATTATTAGTTTGGAGAGCTTTTCAATTTTGGTCAAGGAGCTGTGTGCAAAAGGGATGGTCCTTGAGGCTGAGAGGATATTTGAGGATATGTGTAACAGATGCACAGTGGTTGATGTAGATAGTTACAGAAGTGTGCTAGGAAAGTGGGTACTTGATATAAGCAGTGATCCAAGTTCTAATGGGCAAGTGATTAAGATGAATAGAATGGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

576

Amino Acids

64.61

Weight (kDa)

7.73

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008873)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18940 FvH4_6g18941
malus_domestica	MD08G1069200.v1.1 MD08G1069300.v1.1 MD15G1052800.v1.1
prunus_persica	Prupe.1G406700_v2.0.a1
pyrus_communis	pycom08g05700 pycom08g05710 pycom15g05050
rosa_chinensis	RchiOBHm_Chr6g0311521
rosa_laevigata	RLG00000010397
rosa_multiflora	Rmu_co8085934.1_g000001 Rmu_sc0028020.1_g000001 Rmu_sc0035116.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157540
rosa_rugosa	Rorug06G0389400
rosa_samantha	Rh6AG504200 Rh6AG504300 Rh6BG514900 Rh6CG520700 Rh6DG506700 Rh7DG318900
rosa_wichuraiana	Rw6G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	372
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	794
AccII	CGCG	1 cut(s)	408
AciI	CCGC	5 cut(s)	403, 406, 408, 423, 466
AclWI	GGATC	4 cut(s)	89, 239, 252, 1673
AcoI	YGGCCR	3 cut(s)	400, 1008, 1402
AcsI	RAATTY	3 cut(s)	523, 673, 1306
AfaI	GTAC	3 cut(s)	592, 1130, 1662
AfiI	CCNNNNNNNGG	2 cut(s)	432, 1170
AgsI	TTSAA	9 cut(s)	226, 347, 835, 1018, 1067, 1209, 1256, 1373, 1536
AjuI	GAANNNNNNNTTGG	4 cut(s)	1297, 1329, 1365, 1397
AlwI	GGATC	4 cut(s)	89, 239, 252, 1673
AoxI	GGCC	5 cut(s)	400, 1008, 1041, 1189, 1402
ApeKI	GCWGC	1 cut(s)	1296
ApoI	RAATTY	3 cut(s)	523, 673, 1306
AspS9I	GGNCC	3 cut(s)	231, 1249, 1570
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	7 cut(s)	29, 141, 146, 635, 731, 839, 1397
AvaII	GGWCC	3 cut(s)	231, 1249, 1570
BamHI	GGATCC	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	22
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	1283
BccI	CCATC	4 cut(s)	40, 803, 1145, 1561
BceAI	ACGGC	3 cut(s)	1023, 1417, 1474
BclI	TGATCA	1 cut(s)	544
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	4 cut(s)	15, 92, 170, 1649
BfmI	CTRYAG	1 cut(s)	1426
BfuAI	ACCTGC	1 cut(s)	372
BglI	GCCNNNNNGGC	1 cut(s)	408
BisI	GCNGC	5 cut(s)	403, 406, 409, 423, 1297
BlpI	GCTNAGC	1 cut(s)	127
BlsI	GCNGC	5 cut(s)	404, 407, 410, 424, 1298
BmcAI	AGTACT	1 cut(s)	1130
Bme1390I	CCNGG	1 cut(s)	242
Bme18I	GGWCC	3 cut(s)	231, 1249, 1570
BmgT120I	GGNCC	3 cut(s)	231, 1249, 1570
BmiI	GGNNCC	2 cut(s)	246, 1250
BmrFI	CCNGG	1 cut(s)	242
BmsI	GCATC	2 cut(s)	1069, 1601
Bpu10I	CCTNAGC	3 cut(s)	122, 531, 564
Bpu1102I	GCTNAGC	1 cut(s)	127
BpuEI	CTTGAG	2 cut(s)	1211, 1595
BpuMI	CCSGG	1 cut(s)	242
BsaBI	GATNNNNATC	2 cut(s)	249, 1506
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	2 cut(s)	1093, 1147
Bsc4I	CCNNNNNNNGG	2 cut(s)	432, 1170
Bse3DI	GCAATG	2 cut(s)	849, 1468
Bse8I	GATNNNNATC	2 cut(s)	249, 1506
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	7 cut(s)	960, 972, 1092, 1102, 1156, 1188, 1572
BseJI	GATNNNNATC	2 cut(s)	249, 1506
BseLI	CCNNNNNNNGG	2 cut(s)	432, 1170
BseMI	GCAATG	2 cut(s)	849, 1468
BseMII	CTCAG	6 cut(s)	136, 141, 206, 288, 578, 1572
BseRI	GAGGAG	2 cut(s)	325, 751
BseXI	GCAGC	1 cut(s)	1283
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	5 cut(s)	402, 1010, 1043, 1191, 1404
BsiSI	CCGG	3 cut(s)	242, 1094, 1148
BslFI	GGGAC	1 cut(s)	1262
BslI	CCNNNNNNNGG	2 cut(s)	432, 1170
BsmFI	GGGAC	1 cut(s)	1262
BsmI	GAATGC	1 cut(s)	640
BsnI	GGCC	5 cut(s)	402, 1010, 1043, 1191, 1404
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp1407I	TGTACA	1 cut(s)	590
Bsp143I	GATC	4 cut(s)	94, 244, 544, 1678
Bsp1720I	GCTNAGC	1 cut(s)	127
BspACI	CCGC	5 cut(s)	403, 406, 408, 423, 466
BspANI	GGCC	5 cut(s)	402, 1010, 1043, 1191, 1404
BspCNI	CTCAG	6 cut(s)	135, 140, 205, 289, 577, 1573
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	1724
BspLI	GGNNCC	2 cut(s)	246, 1250
BspMI	ACCTGC	1 cut(s)	372
BspPI	GGATC	4 cut(s)	89, 239, 252, 1673
BsrDI	GCAATG	2 cut(s)	849, 1468
BsrGI	TGTACA	1 cut(s)	590
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	4 cut(s)	94, 244, 544, 1678
BssNAI	GTATAC	1 cut(s)	795
Bst1107I	GTATAC	1 cut(s)	795
Bst4CI	ACNGT	6 cut(s)	787, 1133, 1327, 1420, 1430, 1618
Bst6I	CTCTTC	3 cut(s)	221, 326, 1368
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstAUI	TGTACA	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	12, 668
BstDEI	CTNAG	7 cut(s)	122, 127, 192, 297, 531, 564, 1581
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	7 cut(s)	960, 972, 1092, 1102, 1156, 1188, 1572
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	4 cut(s)	97, 247, 547, 1681
BstMBI	GATC	4 cut(s)	94, 244, 544, 1678
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 408, 775, 1049, 1481
BstNSI	RCATGY	1 cut(s)	1393
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	1426
BstUI	CGCG	1 cut(s)	408
BstV1I	GCAGC	1 cut(s)	1283
BstX2I	RGATCY	2 cut(s)	94, 244
BstYI	RGATCY	2 cut(s)	94, 244
BstZ17I	GTATAC	1 cut(s)	795
BsuRI	GGCC	5 cut(s)	402, 1010, 1043, 1191, 1404
BtgI	CCRYGG	1 cut(s)	406
BtgZI	GCGATG	1 cut(s)	1172
BtsCI	GGATG	7 cut(s)	960, 972, 1092, 1102, 1156, 1188, 1572
BtsI	GCAGTG	2 cut(s)	327, 1681
BtsIMutI	CAGTG	5 cut(s)	294, 327, 1332, 1623, 1681
BveI	ACCTGC	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	12, 668
CciI	TCATGA	1 cut(s)	1724
Cfr13I	GGNCC	3 cut(s)	231, 1249, 1570
Cfr42I	CCGCGG	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	591, 1129, 1661
CviAII	CATG	8 cut(s)	209, 398, 701, 914, 935, 1390, 1471, 1725
CviQI	GTAC	3 cut(s)	591, 1129, 1661
DdeI	CTNAG	7 cut(s)	122, 127, 192, 297, 531, 564, 1581
DpnI	GATC	4 cut(s)	96, 246, 546, 1680
DpnII	GATC	4 cut(s)	94, 244, 544, 1678
EaeI	YGGCCR	3 cut(s)	400, 1008, 1402
Eam1104I	CTCTTC	3 cut(s)	221, 326, 1368
EarI	CTCTTC	3 cut(s)	221, 326, 1368
Eco147I	AGGCCT	1 cut(s)	1191
Eco24I	GRGCYC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	3 cut(s)	231, 1249, 1570
EcoO109I	RGGNCCY	1 cut(s)	1249
EcoRV	GATATC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	22
FaeI	CATG	8 cut(s)	212, 401, 704, 917, 938, 1393, 1474, 1728
FaqI	GGGAC	1 cut(s)	1262
FatI	CATG	8 cut(s)	208, 397, 700, 913, 934, 1389, 1470, 1724
FauNDI	CATATG	1 cut(s)	1108
FbaI	TGATCA	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	5 cut(s)	403, 406, 409, 423, 1297
FokI	GGATG	7 cut(s)	967, 979, 1099, 1109, 1163, 1195, 1579
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	5 cut(s)	403, 406, 409, 423, 1297
FspBI	CTAG	4 cut(s)	15, 92, 170, 1649
GluI	GCNGC	5 cut(s)	403, 406, 409, 423, 1297
HaeIII	GGCC	5 cut(s)	402, 1010, 1043, 1191, 1404
HapII	CCGG	3 cut(s)	242, 1094, 1148
Hin1II	CATG	8 cut(s)	212, 401, 704, 917, 938, 1393, 1474, 1728
HincII	GTYRAC	2 cut(s)	63, 960
HindII	GTYRAC	2 cut(s)	63, 960
HindIII	AAGCTT	2 cut(s)	1210, 1409
HinfI	GANTC	7 cut(s)	350, 360, 490, 697, 910, 1078, 1721
HpaII	CCGG	3 cut(s)	242, 1094, 1148
HphI	GGTGA	7 cut(s)	29, 141, 146, 635, 731, 839, 1397
Hpy166II	GTNNAC	5 cut(s)	63, 795, 894, 960, 1468
Hpy188I	TCNGA	4 cut(s)	419, 549, 576, 753
Hpy188III	TCNNGA	3 cut(s)	347, 1067, 1725
Hpy8I	GTNNAC	5 cut(s)	63, 795, 894, 960, 1468
Hpy99I	CGWCG	1 cut(s)	1049
HpyAV	CCTTC	5 cut(s)	89, 353, 637, 829, 979
HpyCH4III	ACNGT	6 cut(s)	787, 1133, 1327, 1420, 1430, 1618
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	5 cut(s)	85, 615, 1029, 1559, 1614
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 408, 775, 1049, 1481
HpyF3I	CTNAG	7 cut(s)	122, 127, 192, 297, 531, 564, 1581
HpySE526I	ACGT	1 cut(s)	791
Hsp92II	CATG	8 cut(s)	212, 401, 704, 917, 938, 1393, 1474, 1728
Ksp22I	TGATCA	1 cut(s)	544
KspI	CCGCGG	1 cut(s)	409
Kzo9I	GATC	4 cut(s)	94, 244, 544, 1678
LmnI	GCTCC	3 cut(s)	1154, 1493, 1549
Lsp1109I	GCAGC	1 cut(s)	1283
LweI	GCATC	2 cut(s)	1069, 1601
MaeI	CTAG	4 cut(s)	15, 92, 170, 1649
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	4 cut(s)	787, 1385, 1604, 1634
MalI	GATC	4 cut(s)	96, 246, 546, 1680
MboI	GATC	4 cut(s)	94, 244, 544, 1678
MboII	GAAGA	8 cut(s)	208, 211, 214, 296, 313, 1055, 1262, 1385
MflI	RGATCY	2 cut(s)	94, 244
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	9 cut(s)	143, 523, 537, 627, 673, 1306, 1345, 1437, 1536
MlyI	GAGTC	1 cut(s)	354
MmeI	TCCRAC	1 cut(s)	1015
MseI	TTAA	6 cut(s)	138, 974, 1056, 1122, 1215, 1704
MslI	CAYNNNNRTG	1 cut(s)	939
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	3 cut(s)	242, 1094, 1148
MspR9I	CCNGG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	640
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	5 cut(s)	11, 408, 775, 1049, 1481
NciI	CCSGG	1 cut(s)	242
NdeI	CATATG	1 cut(s)	1108
NdeII	GATC	4 cut(s)	94, 244, 544, 1678
NlaIII	CATG	8 cut(s)	212, 401, 704, 917, 938, 1393, 1474, 1728
NlaIV	GGNNCC	2 cut(s)	246, 1250
NmuCI	GTSAC	1 cut(s)	1385
NspI	RCATGY	1 cut(s)	1393
PagI	TCATGA	1 cut(s)	1724
PceI	AGGCCT	1 cut(s)	1191
PctI	GAATGC	1 cut(s)	640
PfeI	GAWTC	5 cut(s)	350, 490, 697, 910, 1078
PflMI	CCANNNNNTGG	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	404, 407, 410, 424, 1298
PleI	GAGTC	1 cut(s)	354
PpsI	GAGTC	1 cut(s)	354
PpuMI	RGGWCCY	1 cut(s)	1249
PsiI	TTATAA	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	1249
PspN4I	GGNNCC	2 cut(s)	246, 1250
PspPI	GGNCC	3 cut(s)	231, 1249, 1570
PspPPI	RGGWCCY	1 cut(s)	1249
PsuI	RGATCY	2 cut(s)	94, 244
RsaI	GTAC	3 cut(s)	592, 1130, 1662
RsaNI	GTAC	3 cut(s)	591, 1129, 1661
RseI	CAYNNNNRTG	1 cut(s)	939
SacII	CCGCGG	1 cut(s)	409
SaqAI	TTAA	6 cut(s)	138, 974, 1056, 1122, 1215, 1704
SatI	GCNGC	5 cut(s)	403, 406, 409, 423, 1297
Sau3AI	GATC	4 cut(s)	94, 244, 544, 1678
Sau96I	GGNCC	3 cut(s)	231, 1249, 1570
ScaI	AGTACT	1 cut(s)	1130
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	1069, 1601
SfcI	CTRYAG	1 cut(s)	1426
Sfr303I	CCGCGG	1 cut(s)	409
SgrBI	CCGCGG	1 cut(s)	409
SinI	GGWCC	3 cut(s)	231, 1249, 1570
SmiMI	CAYNNNNRTG	1 cut(s)	939
SmlI	CTYRAG	2 cut(s)	1226, 1574
SmoI	CTYRAG	2 cut(s)	1226, 1574
Sse9I	AATT	9 cut(s)	143, 523, 537, 627, 673, 1306, 1345, 1437, 1536
SseBI	AGGCCT	1 cut(s)	1191
SsiI	CCGC	5 cut(s)	403, 406, 408, 423, 466
SspMI	CTAG	4 cut(s)	15, 92, 170, 1649
StuI	AGGCCT	1 cut(s)	1191
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	6 cut(s)	787, 1133, 1327, 1420, 1430, 1618
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	2 cut(s)	452, 1239
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	9 cut(s)	143, 523, 537, 627, 673, 1306, 1345, 1437, 1536
TatI	WGTACW	2 cut(s)	590, 1128
TauI	GCSGC	4 cut(s)	405, 408, 411, 425
TfiI	GAWTC	5 cut(s)	350, 490, 697, 910, 1078
Tru1I	TTAA	6 cut(s)	138, 974, 1056, 1122, 1215, 1704
Tru9I	TTAA	6 cut(s)	138, 974, 1056, 1122, 1215, 1704
TscAI	CASTG	5 cut(s)	301, 334, 1332, 1623, 1681
TseFI	GTSAC	1 cut(s)	1385
TseI	GCWGC	1 cut(s)	1296
Tsp45I	GTSAC	1 cut(s)	1385
TspRI	CASTG	5 cut(s)	301, 334, 1332, 1623, 1681
Van91I	CCANNNNNTGG	1 cut(s)	432
VpaK11BI	GGWCC	3 cut(s)	231, 1249, 1570
XapI	RAATTY	3 cut(s)	523, 673, 1306
XceI	RCATGY	1 cut(s)	1393
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	4 cut(s)	15, 92, 170, 1649
ZrmI	AGTACT	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.