Rh6BG514900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008873
Physical Location & Seq
Reverse (-)
70917605 .. 70918513
909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG514900.1

Sequence Viewer

Length: 804 bp
ATGGAGGGTAACGATTGCTTGCCTGATACGGTAACTTATACAACTTTGATTGATGGGTATAGTAAGAAAGGTGAGTTGGGCGAGGCAATGAAGTGTATGGATGAGATGGTGAAACAGGGTTGTGAGCCTAATGTGTTGACTTACAATGCGGTGATTCATGGGCTTTGCATTGCGGGGAAGGCTGATGAAGCTGTTGAGCATCTTAAAGAGATGGCCAGACTTGGGATGAAACTGGATGTGAAAGCATATGGAATTGTTGTCAATGAGTATTGTAAGATGAAAGAACCGGATGGAGCAATTTTGCTTTTAATGGAAATGAGAATGAGAGGCCTGAAGCCAAGTGTTTCGAGCTTTAATGCCGTGCTGAGTGTTCTTCTTGAAAATGGGGAGCTAGAAAGAGCCATTAATCTTGTAAAGCAAATGCCACAAATGGGTTGCTTTCCCAATTTCTTTTCATACAACTCAGTGATATGTAGTCTTTGTAATGTGAGAGGTAGAATGGGGGAAGTTGAAGGGCTTATCCATGACATGCTTCGAAATGGTCATGCCCTTGATGCCACGCTCTGTAGTTGCTTGGTCAAAGGTTATTGCGATGATGGTGATTTGAGAAGCGCAATGCAGGTTTTCTGTGACGCACTTGATCAGAGGTACATTATTAGTTTGGAGAGCTTTTCAGTTTTCGTCAAAGAGTTATGCGCCAAGGGGAAGGCTGTTGAGGCTGAGAGGATGTTTGAGGATATGTGTAAAAGATGCAGTGTGGTTCATATAGATATTTACAGAAAGGTGTTAGATGATTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_1 PPR_2 PPR_3

Protein Analysis

267

Amino Acids

29.83

Weight (kDa)

5.17

Isoelectric Point (pI)

20.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 4 - 52 1.8e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 5 - 37 1.8e-11 PPR repeat
PPR_2 PF13041 8 - 56 1.4e-20 PPR repeat family
PPR PF01535 11 - 41 1e-09 PPR repeat
TPR_24 PF23276 11 - 99 7.2e-07 Fungal tetratrico peptide repeats
PPR_1 PF12854 40 - 71 4.9e-12 PPR repeat
PPR_2 PF13041 43 - 92 3.1e-12 PPR repeat family
PPR PF01535 47 - 75 7.6e-07 PPR repeat
PPR_3 PF13812 68 - 125 3.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 79 - 123 4.4e-07 PPR repeat family
PPR_3 PF13812 102 - 157 1.9e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 113 - 162 7.5e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AciI CCGC 2 cut(s) 149, 173
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 353
AfaI GTAC 1 cut(s) 650
AfiI CCNNNNNNNGG 2 cut(s) 222, 431
AgsI TTSAA 2 cut(s) 380, 512
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 191, 351, 391, 669
AluI AGCT 4 cut(s) 191, 351, 391, 669
AoxI GGCC 2 cut(s) 213, 328
AseI ATTAAT 1 cut(s) 405
AspLEI GCGC 2 cut(s) 614, 698
AsuHPI GGTGA 4 cut(s) 83, 121, 163, 611
AsuII TTCGAA 1 cut(s) 535
BalI TGGCCA 1 cut(s) 215
BccI CCATC 5 cut(s) 47, 100, 205, 284, 590
BceAI ACGGC 1 cut(s) 344
BclI TGATCA 1 cut(s) 640
BfaI CTAG 1 cut(s) 392
BfmI CTRYAG 1 cut(s) 565
BfuAI ACCTGC 1 cut(s) 610
BmsI GCATC 3 cut(s) 208, 544, 740
Bpu14I TTCGAA 1 cut(s) 535
BsaJI CCNNGG 1 cut(s) 699
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 431
Bse1I ACTGG 1 cut(s) 237
Bse3DI GCAATG 3 cut(s) 93, 168, 621
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 5 cut(s) 106, 231, 241, 295, 732
BseLI CCNNNNNNNGG 2 cut(s) 222, 431
BseMI GCAATG 3 cut(s) 93, 168, 621
BseMII CTCAG 3 cut(s) 356, 477, 711
BseNI ACTGG 1 cut(s) 237
BshFI GGCC 2 cut(s) 215, 330
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 222, 431
BsnI GGCC 2 cut(s) 215, 330
Bsp119I TTCGAA 1 cut(s) 535
Bsp143I GATC 1 cut(s) 640
BspACI CCGC 2 cut(s) 149, 173
BspANI GGCC 2 cut(s) 215, 330
BspCNI CTCAG 3 cut(s) 357, 476, 712
BspMI ACCTGC 1 cut(s) 610
BspT104I TTCGAA 1 cut(s) 535
BsrDI GCAATG 3 cut(s) 93, 168, 621
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 1 cut(s) 640
BssT1I CCWWGG 1 cut(s) 699
Bst4CI ACNGT 1 cut(s) 31
BstBI TTCGAA 1 cut(s) 535
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 365, 463, 720
BstF5I GGATG 5 cut(s) 106, 231, 241, 295, 732
BstHHI GCGC 2 cut(s) 614, 698
BstKTI GATC 1 cut(s) 643
BstMBI GATC 1 cut(s) 640
BstMWI GCNNNNNNNGC 4 cut(s) 179, 188, 554, 716
BstNSI RCATGY 1 cut(s) 532
BstSFI CTRYAG 1 cut(s) 565
BsuRI GGCC 2 cut(s) 215, 330
BtgZI GCGATG 1 cut(s) 606
BtsCI GGATG 5 cut(s) 106, 231, 241, 295, 732
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 2 cut(s) 471, 760
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 20
CfoI GCGC 2 cut(s) 614, 698
CseI GACGC 1 cut(s) 641
Csp6I GTAC 1 cut(s) 649
CviAII CATG 4 cut(s) 158, 524, 529, 545
CviQI GTAC 1 cut(s) 649
DdeI CTNAG 3 cut(s) 365, 463, 720
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 699
Eco147I AGGCCT 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 699
FaeI CATG 4 cut(s) 161, 527, 532, 548
FatI CATG 4 cut(s) 157, 523, 528, 544
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 247
FbaI TGATCA 1 cut(s) 640
FokI GGATG 5 cut(s) 113, 238, 248, 302, 739
FspBI CTAG 1 cut(s) 392
GlaI GCGC 2 cut(s) 613, 697
HaeIII GGCC 2 cut(s) 215, 330
HapII CCGG 1 cut(s) 287
HgaI GACGC 1 cut(s) 641
HhaI GCGC 2 cut(s) 614, 698
Hin1II CATG 4 cut(s) 161, 527, 532, 548
Hin6I GCGC 2 cut(s) 612, 696
HinP1I GCGC 2 cut(s) 612, 696
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 1 cut(s) 154
HpaII CCGG 1 cut(s) 287
HphI GGTGA 4 cut(s) 83, 121, 163, 611
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 645
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 3 cut(s) 172, 506, 700
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 3 cut(s) 168, 619, 753
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 188, 554, 716
HpyF3I CTNAG 3 cut(s) 365, 463, 720
Hsp92II CATG 4 cut(s) 161, 527, 532, 548
HspAI GCGC 2 cut(s) 612, 696
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 1 cut(s) 640
LmnI GCTCC 2 cut(s) 293, 388
LpnPI CCDG 7 cut(s) 36, 101, 218, 229, 300, 344, 605
LweI GCATC 3 cut(s) 208, 544, 740
MaeI CTAG 1 cut(s) 392
MaeIII GTNAC 3 cut(s) 8, 31, 629
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MboII GAAGA 1 cut(s) 365
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 3 cut(s) 252, 297, 445
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 7 cut(s) 76, 320, 485, 639, 709, 717, 727
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 4 cut(s) 204, 308, 354, 405
Msp20I TGGCCA 1 cut(s) 215
MspI CCGG 1 cut(s) 287
MwoI GCNNNNNNNGC 4 cut(s) 179, 188, 554, 716
NdeI CATATG 1 cut(s) 247
NdeII GATC 1 cut(s) 640
NlaIII CATG 4 cut(s) 161, 527, 532, 548
NmuCI GTSAC 1 cut(s) 629
NspI RCATGY 1 cut(s) 532
NspV TTCGAA 1 cut(s) 535
PceI AGGCCT 1 cut(s) 330
PfeI GAWTC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 405
RsaI GTAC 1 cut(s) 650
RsaNI GTAC 1 cut(s) 649
SaqAI TTAA 4 cut(s) 204, 308, 354, 405
Sau3AI GATC 1 cut(s) 640
SfaNI GCATC 3 cut(s) 208, 544, 740
SfcI CTRYAG 1 cut(s) 565
SfuI TTCGAA 1 cut(s) 535
Sse9I AATT 3 cut(s) 252, 297, 445
SseBI AGGCCT 1 cut(s) 330
SsiI CCGC 2 cut(s) 149, 173
SspMI CTAG 1 cut(s) 392
StuI AGGCCT 1 cut(s) 330
StyI CCWWGG 1 cut(s) 699
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 347, 535
TasI AATT 3 cut(s) 252, 297, 445
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 4 cut(s) 204, 308, 354, 405
Tru9I TTAA 4 cut(s) 204, 308, 354, 405
TscAI CASTG 2 cut(s) 471, 760
TseFI GTSAC 1 cut(s) 629
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 7 cut(s) 104, 146, 201, 242, 293, 444, 752
TspRI CASTG 2 cut(s) 471, 760
VspI ATTAAT 1 cut(s) 405
XceI RCATGY 1 cut(s) 532
XspI CTAG 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.