Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008873

Physical Location & Seq

Genomic Coordinates Reverse (-)

67666679 .. 67667324

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG504200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGTGATTATGACGGATTCACTCTTCTCCAAGTTTTAGTCCCAGAGAAGGAGAATCTTTGCCTTTATGGATTTCCAAGCGAGCAGTGGGAAGTTAATTTGCCAGCAGAGGAGGTTCCTCCAGAGCTTCCAGAACCAACACTTGGTATCAACTTTGCCAGAGATGGGATGCAAAAGATGGAGTGGTTATCCTTGGTAGCTCTCTACAGTGATACTTGGTTACTTTCTGTGACAATGCGCAATGGATATGATCCGTGTCCTGACTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

89

Amino Acids

10.14

Weight (kDa)

4.05

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	9 - 80	6.4e-35	Alfin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008873)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18940 FvH4_6g18941
malus_domestica	MD08G1069200.v1.1 MD08G1069300.v1.1 MD15G1052800.v1.1
prunus_persica	Prupe.1G406700_v2.0.a1
pyrus_communis	pycom08g05700 pycom08g05710 pycom15g05050
rosa_chinensis	RchiOBHm_Chr6g0311521
rosa_laevigata	RLG00000010397
rosa_multiflora	Rmu_co8085934.1_g000001 Rmu_sc0028020.1_g000001 Rmu_sc0035116.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157540
rosa_rugosa	Rorug06G0389400
rosa_samantha	Rh6AG504200 Rh6AG504300 Rh6BG514900 Rh6CG520700 Rh6DG506700 Rh7DG318900
rosa_wichuraiana	Rw6G043910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	239
AccB7I	CCANNNNNTGG	1 cut(s)	143
AclWI	GGATC	1 cut(s)	245
AfiI	CCNNNNNNNGG	3 cut(s)	49, 143, 165
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	2 cut(s)	127, 200
AluI	AGCT	2 cut(s)	127, 200
AlwI	GGATC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	158, 172
BfmI	CTRYAG	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	117
BmsI	GCATC	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 143, 165
Bse3DI	GCAATG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	3 cut(s)	49, 143, 165
BseMI	GCAATG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	125
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	49, 143, 165
BsmFI	GGGAC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	117
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	83, 105
BstF5I	GGATG	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	92, 214
Cac8I	GCNNGC	2 cut(s)	83, 105
CfoI	GCGC	1 cut(s)	240
CviJI	RGCY	2 cut(s)	127, 200
CviKI_1	RGCY	2 cut(s)	127, 200
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaiI	YATR	3 cut(s)	12, 69, 249
FaqI	GGGAC	1 cut(s)	26
FokI	GGATG	1 cut(s)	181
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	1 cut(s)	239
GsuI	CTGGAG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	240
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	18, 55, 263
Hpy188III	TCNNGA	4 cut(s)	122, 131, 260, 267
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	172
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	57, 117, 135, 144, 172
LweI	GCATC	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	219, 229
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	3 cut(s)	103, 106, 129
MseI	TTAA	1 cut(s)	96
NdeII	GATC	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	229
NsbI	TGCGCA	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	18, 55
PflMI	CCANNNNNTGG	1 cut(s)	143
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	257
SetI	ASST	3 cut(s)	117, 129, 202
SfaNI	GCATC	1 cut(s)	159
SfcI	CTRYAG	1 cut(s)	205
Sse9I	AATT	1 cut(s)	97
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	209
TasI	AATT	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	18, 55
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	2 cut(s)	92, 214
TseFI	GTSAC	1 cut(s)	229
Tsp45I	GTSAC	1 cut(s)	229
TspGWI	ACGGA	2 cut(s)	30, 243
TspRI	CASTG	2 cut(s)	92, 214
Van91I	CCANNNNNTGG	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.