FvH4_6g21712

Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003503
Physical Location & Seq
Forward (+)
15250761 .. 15251481
721 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21712.t1

Sequence Viewer

Length: 312 bp
ATGATGCCTTGTCCCAAAAGGAGCTCCAAACTTGTGGGAAGAGCACAAGGGTTTTATGCATCTGCCTCACAAAGTGAAGATGCTTTGTTGATGTCCATGAACTTGGCTTTCACGGAAGGCAAGTTTAATGGTAGCAGTCTTACTGTTTTGGGACGAAACGCTGTGGTTGAAGCTGTAAGAGAGATGCCTATAATCGGTGGAAGTGGACTTTTTCGGTTTGCTCGGGGTTATGTTCAGGCCAAGACTCTCACGTTCAATGCCACAACCGGAGATGCTGTTGTTGAATACAATGTGTTTGTACTGCATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dirigent

Protein Analysis

104

Amino Acids

11.15

Weight (kDa)

9.3

Isoelectric Point (pI)

53.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 5 - 100 6.7e-39 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 74
AfaI GTAC 1 cut(s) 300
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 3 cut(s) 170, 256, 284
AluBI AGCT 2 cut(s) 24, 173
AluI AGCT 2 cut(s) 24, 173
Alw21I GWGCWC 2 cut(s) 26, 46
Ama87I CYCGRG 1 cut(s) 222
AoxI GGCC 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 222
BanII GRGCYC 1 cut(s) 26
Bbv12I GWGCWC 2 cut(s) 26, 46
BmeT110I CYCGRG 1 cut(s) 222
BmsI GCATC 4 cut(s) 68, 70, 174, 262
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 194
BshFI GGCC 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 26, 46
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 222
Bsp1286I GDGCHC 2 cut(s) 26, 46
BspANI GGCC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 34
BstXI CCANNNNNNTGG 2 cut(s) 34, 103
BsuRI GGCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 299
CviAII CATG 1 cut(s) 97
CviJI RGCY 4 cut(s) 24, 107, 173, 239
CviKI_1 RGCY 4 cut(s) 24, 107, 173, 239
CviQI GTAC 1 cut(s) 299
DraIII CACNNNGTG 1 cut(s) 74
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 24
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 61
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 1 cut(s) 100
FaiI YATR 4 cut(s) 57, 98, 191, 231
FaqI GGGAC 1 cut(s) 165
FatI CATG 1 cut(s) 96
FriOI GRGCYC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 239
HapII CCGG 1 cut(s) 267
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 244
HpaII CCGG 1 cut(s) 267
Hpy166II GTNNAC 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 59, 304
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 1 cut(s) 100
LguI GCTCTTC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 21, 29
LpnPI CCDG 2 cut(s) 221, 280
LweI GCATC 4 cut(s) 68, 70, 174, 262
MaeII ACGT 1 cut(s) 251
MboII GAAGA 2 cut(s) 51, 89
MhlI GDGCHC 2 cut(s) 26, 46
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 1 cut(s) 76
Mph1103I ATGCAT 1 cut(s) 61
MseI TTAA 1 cut(s) 126
MspI CCGG 1 cut(s) 267
NlaIII CATG 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 26
RsaI GTAC 1 cut(s) 300
RsaNI GTAC 1 cut(s) 299
SacI GAGCTC 1 cut(s) 26
SapI GCTCTTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 126
SchI GAGTC 1 cut(s) 238
SduI GDGCHC 2 cut(s) 26, 46
SetI ASST 3 cut(s) 26, 175, 254
SfaNI GCATC 4 cut(s) 68, 70, 174, 262
SstI GAGCTC 1 cut(s) 26
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 254
TatI WGTACW 1 cut(s) 298
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TspDTI ATGAA 1 cut(s) 113
TspGWI ACGGA 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.