Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003503

Physical Location & Seq

Genomic Coordinates Reverse (-)

14368390 .. 14368773

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0170000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGCATTAGCTGCAGTAACCAAACAGGCAATGTCATTAAGCTTTCCCTTAGCAATATCTACAGTACGCGGACATGCTTAAGCGGTGAGTTAGATGATTCTTTGCTCAACTTAACATACTTGAATTACTTGGATCTCAGTAATAATTCTTTCAATGGAATTCCCATCCCGAGTTTTATAGGGTCACTCAAGAAGTTGAGGTACCTTGACCTCTCTCACTCATCTTTTGGGGGAATGGTTCCTCATCATCTTGGTAATCTATCAAACTTGCTCTACCTTGACCTCACAACAAAATCATATCCATTGAGGCCATGGGATTCAGATTTGAATTGTCTTGGTAGTCTCTTCCTTGCAATACCTCAGTTTGGGGGGCTTGAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

127

Amino Acids

13.94

Weight (kDa)

5.78

Isoelectric Point (pI)

26.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	34 - 97	7.6e-07	Leucine-rich repeat region
LRR_8	PF13855	40 - 96	2.3e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65870
fragaria_vesca	FvH4_6g21711 FvH4_6g21712
malus_domestica	MD12G1053900.v1.1 MD14G1052200.v1.1 MD14G1052400.v1.1 MD14G1052500.v1.1
prunus_persica	Prupe.7G083000_v2.0.a1 Prupe.7G083100_v2.0.a1
pyrus_communis	pycom14g04350 pycom14g04380
rosa_chinensis	RchiOBHm_Chr3g0478991 RchiOBHm_Chr3g0479011 RchiOBHm_Chr3g0479031
rosa_laevigata	RLG00000023611 RLG00000023613
rosa_multiflora	Rmu_sc0005645.1_g000007 Rmu_sc0005645.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402830 Rroxscaffold_6G00402840
rosa_rugosa	Rorug03G0170000 Rorug03G0170100 Rorug03G0304300
rosa_samantha	Rh3AG221000 Rh3AG221400 Rh3BG253200 Rh3BG253300 Rh3BG253700 Rh3CG249800 Rh3CG249900 Rh3DG245800 Rh3DG246000 Rh4AG008400
rosa_wichuraiana	Rw3G019880 Rw3G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AccII	CGCG	1 cut(s)	70
AciI	CCGC	2 cut(s)	70, 84
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	2 cut(s)	67, 203
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflII	CTTAAG	1 cut(s)	79
AgsI	TTSAA	4 cut(s)	124, 154, 328, 377
AluBI	AGCT	2 cut(s)	12, 43
AluI	AGCT	2 cut(s)	12, 43
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	141
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BccI	CCATC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	13, 61
BfrI	CTTAAG	1 cut(s)	79
BisI	GCNGC	1 cut(s)	13
BlsI	GCNGC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	169
BmiI	GGNNCC	2 cut(s)	203, 240
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse3DI	GCAATG	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	1 cut(s)	37
BseMII	CTCAG	2 cut(s)	151, 374
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	310
BsoBI	CYCGRG	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	311
BspACI	CCGC	2 cut(s)	70, 84
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	2 cut(s)	150, 373
BspFNI	CGCG	1 cut(s)	70
BspLI	GGNNCC	2 cut(s)	203, 240
BspMAI	CTGCAG	1 cut(s)	17
BspPI	GGATC	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	311
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	12
BstDEI	CTNAG	4 cut(s)	50, 137, 360, 381
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	165
BstFNI	CGCG	1 cut(s)	70
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	78
BstSFI	CTRYAG	2 cut(s)	13, 61
BstUI	CGCG	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	311
BtsCI	GGATG	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	66, 202
CviAII	CATG	2 cut(s)	75, 312
CviJI	RGCY	4 cut(s)	12, 43, 310, 373
CviKI_1	RGCY	4 cut(s)	12, 43, 310, 373
CviQI	GTAC	2 cut(s)	66, 202
DdeI	CTNAG	4 cut(s)	50, 137, 360, 381
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	2 cut(s)	78, 315
FaiI	YATR	5 cut(s)	76, 118, 179, 298, 313
FatI	CATG	2 cut(s)	74, 311
Fnu4HI	GCNGC	1 cut(s)	13
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	310
Hin1II	CATG	2 cut(s)	78, 315
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	98, 317
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	169, 190
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	15, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	4 cut(s)	50, 137, 360, 381
Hsp92II	CATG	2 cut(s)	78, 315
KpnI	GGTACC	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	17, 183
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	337
MflI	RGATCY	1 cut(s)	133
MluCI	AATT	4 cut(s)	124, 145, 159, 328
MnlI	CCTC	6 cut(s)	192, 221, 252, 293, 300, 369
MseI	TTAA	3 cut(s)	39, 80, 113
MspCI	CTTAAG	1 cut(s)	79
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	2 cut(s)	78, 315
NlaIV	GGNNCC	2 cut(s)	203, 240
NmuCI	GTSAC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	98, 317
PkrI	GCNGC	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	203, 240
PstI	CTGCAG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	67, 203
RsaNI	GTAC	2 cut(s)	66, 202
SaqAI	TTAA	3 cut(s)	39, 80, 113
SatI	GCNGC	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	133
SetI	ASST	9 cut(s)	14, 45, 203, 207, 213, 279, 285, 361, 382
SfcI	CTRYAG	2 cut(s)	13, 61
SmlI	CTYRAG	2 cut(s)	79, 188
SmoI	CTYRAG	2 cut(s)	79, 188
Sse9I	AATT	4 cut(s)	124, 145, 159, 328
SsiI	CCGC	2 cut(s)	70, 84
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	1 cut(s)	65
TasI	AATT	4 cut(s)	124, 145, 159, 328
TfiI	GAWTC	2 cut(s)	98, 317
Tru1I	TTAA	3 cut(s)	39, 80, 113
Tru9I	TTAA	3 cut(s)	39, 80, 113
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	1 cut(s)	12
Tsp45I	GTSAC	1 cut(s)	183
Vha464I	CTTAAG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	159
XceI	RCATGY	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.