Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0003503

Physical Location & Seq

Genomic Coordinates Forward (+)

3808964 .. 3811448

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04380.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGGATATGGATGTGCCACTTGTCAAAGATAGGTTAAGTTTGTTTGACAAGTTGTTAGCCGAGTTAGTTAGGGTTACAATCAATGTAGTCCCTGAAAATAGGTGTCGCAAATCAATGTGGTGCTACATAAATGGGTCTCATAAGTCTTTTTTTTTTTTTTTCCTTCACAAATGGACATCAAAATGGTTCATGAAATTGAAAATCGATAATGTAGTCCCACAAGTAAGTGTCCTAGATCAATGTAGTTTTTCCATCACAATTTTATCAAAAATTCTGTTATGTATTGGTGTAACACGCAAATGGAGGCTTAATAATTTAATAGTTAATAAAAAGTTGTCAACCCAAAAATCCAGTCATGCAATCACCTCCAATCCCAGTCCACATTCCTCTACCTCCTTCACTGTCTATTCTCTAAAAAAAAATCTTTACACACTTCGACTTCACCGAATTGAACCTGGATTGAGATCATCTTTGGTGATGGCTTGGCCAATTGGCAATGCTTGGAGAGCTTGTTCGGCGCTTCCTTGGTGGCTTGGTGACTCAAAGAATGGCGAGGTCTACCTTGTCTTGGTTAAGCCTTGTGCATTTGAGAATTTATGGAAGGGATCTCTCTTCGGAGTAGGCCCTATTATAAAAGAAAAAATTTCATTTTACAAAAAGCACATAACAAATTTTTTCTTACAGAATTGTAGTAGAATGATCATATTGATTTGCGACACCTATTTTCAAGGACTACATTCATCGATTTTCAATTTTAGGGACCATCTTGATGGTGTGGTGGGGCCCATTTATGTGCCACATCAGCACTTAATGAAATTTTTAATAGAATTTTTCAATTTCAAGGACCATCTTGATGGTGAGGATCATCCAACTCAGACTTTTCCTCTAATAGAAACATTAAATCATCAATGCACAAATCCAAGATTCTTGAGCTCAATCAGAGATTCTGGAGCACAATCGGAATCTTGTAAGCCACTGCAACCATCTCCATCTTCTCTCTTTTCTTATTCAAACCATTGTTTTTTAATATATTTACATGGACTGATTTTTCTTATTTTCAATTTTTGTTTTTGTATATGCTTTCAAGTTGGTTGTCGTTTGGAACTATGCATCCCTATTTTATTGCGAAGCGATCACAAGGGTCGCATGATCGTTGCTAAAATTTATTCACGACGGTTTCATGATTTTACACAACGAAATTTTAGCGTCACAACTTGTTATGCCAATCCTGGTCTTAAAACTCTTTTGTATATACTTTCTCTCCTTCAAAACGCTCTACATAATCCTCGGTTCTCTACAATGATCAAGACCCTCCAAAACCTCAGTTTTACCTGCACCATTCTCATAACCATTTCCTTCTTCGTCCTCTCAACCCTTGTCGCATCGGAAACTCACCGTTTTATAAGACCGTTATCTTCATCAAAACATGGTATAAAGAGAGAGAAACTAAGCCATATTCACTTCTACTTCCATGACATAGTCAGTGGCCGACCCCCACGGACTGGCTTTGGCACTGTGTTCATGACGGACGATCCATTGACTATCGGCCCTGAATCGAGCACTAAGCTAGTCGGAAAAGCCCAAGGTATTTATGCTTCAGCTTCACAAAGTGAGTTGGGGCTTTTGATGGCCTTGAATTTTGTTTTTGTTGAAGGGAAGTATATAATGGTAGCACTCTTATTGCGTTGGGGCGCAACACCGTGTCCTCAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

572

Amino Acids

65.36

Weight (kDa)

9.48

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65870
fragaria_vesca	FvH4_6g21711 FvH4_6g21712
malus_domestica	MD12G1053900.v1.1 MD14G1052200.v1.1 MD14G1052400.v1.1 MD14G1052500.v1.1
prunus_persica	Prupe.7G083000_v2.0.a1 Prupe.7G083100_v2.0.a1
pyrus_communis	pycom14g04350 pycom14g04380
rosa_chinensis	RchiOBHm_Chr3g0478991 RchiOBHm_Chr3g0479011 RchiOBHm_Chr3g0479031
rosa_laevigata	RLG00000023611 RLG00000023613
rosa_multiflora	Rmu_sc0005645.1_g000007 Rmu_sc0005645.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402830 Rroxscaffold_6G00402840
rosa_rugosa	Rorug03G0170000 Rorug03G0170100 Rorug03G0304300
rosa_samantha	Rh3AG221000 Rh3AG221400 Rh3BG253200 Rh3BG253300 Rh3BG253700 Rh3CG249800 Rh3CG249900 Rh3DG245800 Rh3DG246000 Rh4AG008400
rosa_wichuraiana	Rw3G019880 Rw3G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	632, 1403
Acc36I	ACCTGC	1 cut(s)	1340
AccB7I	CCANNNNNTGG	1 cut(s)	1502
AccI	GTMKAC	1 cut(s)	558
AclWI	GGATC	3 cut(s)	613, 870, 1526
AcoI	YGGCCR	2 cut(s)	485, 1486
AcsI	RAATTY	9 cut(s)	270, 592, 642, 670, 815, 827, 1161, 1198, 1636
AcuI	CTGAAG	1 cut(s)	1581
AdeI	CACNNNGTG	1 cut(s)	1610
AfiI	CCNNNNNNNGG	2 cut(s)	568, 1502
AjnI	CCWGG	2 cut(s)	454, 1228
AloI	GAACNNNNNNTCC	4 cut(s)	496, 528, 1095, 1127
AluBI	AGCT	4 cut(s)	509, 933, 1567, 1601
AluI	AGCT	4 cut(s)	509, 933, 1567, 1601
Alw21I	GWGCWC	3 cut(s)	935, 955, 1562
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	613, 870, 1526
AoxI	GGCC	6 cut(s)	485, 622, 782, 1486, 1546, 1629
ApaI	GGGCCC	1 cut(s)	786
ApoI	RAATTY	9 cut(s)	270, 592, 642, 670, 815, 827, 1161, 1198, 1636
ArsI	GACNNNNNNTTYG	2 cut(s)	337, 369
AspLEI	GCGC	2 cut(s)	520, 1694
AspS9I	GGNCC	6 cut(s)	623, 760, 782, 783, 844, 1547
AsuHPI	GGTGA	6 cut(s)	355, 434, 487, 548, 869, 1385
AvaII	GGWCC	2 cut(s)	760, 844
BaeGI	GKGCMC	1 cut(s)	786
BalI	TGGCCA	1 cut(s)	487
BanII	GRGCYC	2 cut(s)	786, 935
BarI	GAAGNNNNNNTAC	2 cut(s)	1579, 1611
Bbv12I	GWGCWC	3 cut(s)	935, 955, 1562
BbvCI	CCTCAGC	1 cut(s)	1707
BccI	CCATC	9 cut(s)	260, 472, 764, 771, 848, 855, 991, 997, 1621
BceAI	ACGGC	1 cut(s)	1696
BciT130I	CCWGG	2 cut(s)	456, 1230
BclI	TGATCA	2 cut(s)	699, 1302
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	2 cut(s)	233, 1568
BfoI	RGCGCY	1 cut(s)	521
BfuAI	ACCTGC	1 cut(s)	1340
Bme1390I	CCNGG	2 cut(s)	456, 1230
Bme18I	GGWCC	2 cut(s)	760, 844
BmgT120I	GGNCC	6 cut(s)	623, 760, 782, 783, 844, 1547
BmiI	GGNNCC	3 cut(s)	761, 783, 784
BmrFI	CCNGG	2 cut(s)	456, 1230
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	2 cut(s)	1119, 1391
BmuI	ACTGGG	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	969
Bpu10I	CCTNAGC	1 cut(s)	1707
BpuEI	CTTGAG	1 cut(s)	949
Bsa29I	ATCGAT	2 cut(s)	204, 743
BsaBI	GATNNNNATC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	524, 1286, 1496, 1582
BsaXI	ACNNNNNCTCC	4 cut(s)	496, 526, 1245, 1275
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 1502
Bse1I	ACTGG	3 cut(s)	351, 375, 1507
Bse3DI	GCAATG	1 cut(s)	502
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	456, 1230
BseCI	ATCGAT	2 cut(s)	204, 743
BseDI	CCNNGG	4 cut(s)	524, 1286, 1496, 1582
BseGI	GGATG	3 cut(s)	16, 865, 1110
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	568, 1502
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	887, 1336
BseNI	ACTGG	3 cut(s)	351, 375, 1507
BseSI	GKGCMC	1 cut(s)	786
BsgI	GTGCAG	1 cut(s)	1318
BshFI	GGCC	6 cut(s)	487, 624, 784, 1488, 1548, 1631
BshVI	ATCGAT	2 cut(s)	204, 743
BsiHKAI	GWGCWC	3 cut(s)	935, 955, 1562
BslFI	GGGAC	3 cut(s)	74, 200, 773
BslI	CCNNNNNNNGG	2 cut(s)	568, 1502
BsmAI	GTCTC	1 cut(s)	141
BsmFI	GGGAC	3 cut(s)	74, 200, 773
BsnI	GGCC	6 cut(s)	487, 624, 784, 1488, 1548, 1631
Bso31I	GGTCTC	1 cut(s)	141
Bsp120I	GGGCCC	1 cut(s)	782
Bsp1286I	GDGCHC	4 cut(s)	786, 935, 955, 1562
Bsp143I	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
BspANI	GGCC	6 cut(s)	487, 624, 784, 1488, 1548, 1631
BspCNI	CTCAG	2 cut(s)	886, 1335
BspDI	ATCGAT	2 cut(s)	204, 743
BspHI	TCATGA	3 cut(s)	189, 1180, 1521
BspLI	GGNNCC	3 cut(s)	761, 783, 784
BspMI	ACCTGC	1 cut(s)	1340
BspPI	GGATC	3 cut(s)	613, 870, 1526
BspTNI	GGTCTC	1 cut(s)	141
BsrDI	GCAATG	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	351, 375, 1507
BssECI	CCNNGG	4 cut(s)	524, 1286, 1496, 1582
BssMI	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
BssT1I	CCWWGG	2 cut(s)	524, 1582
Bst2UI	CCWGG	2 cut(s)	456, 1230
Bst4CI	ACNGT	6 cut(s)	403, 1176, 1397, 1410, 1516, 1701
Bst6I	CTCTTC	1 cut(s)	617
BstDEI	CTNAG	5 cut(s)	873, 1322, 1448, 1563, 1707
BstDSI	CCRYGG	1 cut(s)	1496
BstF5I	GGATG	3 cut(s)	16, 865, 1110
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	2 cut(s)	520, 1694
BstKTI	GATC	9 cut(s)	238, 467, 608, 702, 865, 1135, 1152, 1305, 1534
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
BstMWI	GCNNNNNNNGC	3 cut(s)	506, 515, 802
BstNI	CCWGG	2 cut(s)	456, 1230
BstSCI	CCNGG	2 cut(s)	454, 1228
BstSLI	GKGCMC	1 cut(s)	786
BstX2I	RGATCY	1 cut(s)	605
BstXI	CCANNNNNNTGG	2 cut(s)	770, 854
BstYI	RGATCY	1 cut(s)	605
Bsu15I	ATCGAT	2 cut(s)	204, 743
BsuRI	GGCC	6 cut(s)	487, 624, 784, 1488, 1548, 1631
BsuTUI	ATCGAT	2 cut(s)	204, 743
BtgI	CCRYGG	1 cut(s)	1496
BtsCI	GGATG	3 cut(s)	16, 865, 1110
BtsI	GCAGTG	1 cut(s)	974
BtsIMutI	CAGTG	4 cut(s)	399, 974, 1489, 1512
BveI	ACCTGC	1 cut(s)	1340
CciI	TCATGA	3 cut(s)	189, 1180, 1521
CfoI	GCGC	2 cut(s)	520, 1694
Cfr13I	GGNCC	6 cut(s)	623, 760, 782, 783, 844, 1547
ClaI	ATCGAT	2 cut(s)	204, 743
CseI	GACGC	1 cut(s)	1195
CviAII	CATG	8 cut(s)	190, 356, 1037, 1147, 1181, 1427, 1472, 1522
DdeI	CTNAG	5 cut(s)	873, 1322, 1448, 1563, 1707
DpnI	GATC	9 cut(s)	237, 466, 607, 701, 864, 1134, 1151, 1304, 1533
DpnII	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
DraIII	CACNNNGTG	1 cut(s)	1610
EaeI	YGGCCR	2 cut(s)	485, 1486
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Ecl136II	GAGCTC	1 cut(s)	933
Eco130I	CCWWGG	2 cut(s)	524, 1582
Eco24I	GRGCYC	2 cut(s)	786, 935
Eco31I	GGTCTC	1 cut(s)	141
Eco47I	GGWCC	2 cut(s)	760, 844
Eco53kI	GAGCTC	1 cut(s)	933
Eco57I	CTGAAG	1 cut(s)	1581
EcoICRI	GAGCTC	1 cut(s)	933
EcoO109I	RGGNCCY	2 cut(s)	623, 782
EcoRII	CCWGG	2 cut(s)	454, 1228
EcoT14I	CCWWGG	2 cut(s)	524, 1582
EcoT22I	ATGCAT	1 cut(s)	1112
EcoT38I	GRGCYC	2 cut(s)	786, 935
ErhI	CCWWGG	2 cut(s)	524, 1582
FaeI	CATG	8 cut(s)	193, 359, 1040, 1150, 1184, 1430, 1475, 1525
FaqI	GGGAC	3 cut(s)	74, 200, 773
FatI	CATG	8 cut(s)	189, 355, 1036, 1146, 1180, 1426, 1471, 1521
FbaI	TGATCA	2 cut(s)	699, 1302
FblI	GTMKAC	1 cut(s)	558
FokI	GGATG	3 cut(s)	23, 852, 1097
FriOI	GRGCYC	2 cut(s)	786, 935
FspBI	CTAG	2 cut(s)	233, 1568
GlaI	GCGC	2 cut(s)	519, 1693
GsuI	CTGGAG	1 cut(s)	969
HaeII	RGCGCY	1 cut(s)	521
HaeIII	GGCC	6 cut(s)	487, 624, 784, 1488, 1548, 1631
HgaI	GACGC	1 cut(s)	1195
HhaI	GCGC	2 cut(s)	520, 1694
Hin1II	CATG	8 cut(s)	193, 359, 1040, 1150, 1184, 1430, 1475, 1525
Hin6I	GCGC	2 cut(s)	518, 1692
HinP1I	GCGC	2 cut(s)	518, 1692
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	5 cut(s)	539, 924, 944, 962, 1553
HphI	GGTGA	6 cut(s)	355, 434, 487, 548, 869, 1385
Hpy166II	GTNNAC	3 cut(s)	339, 380, 559
Hpy188I	TCNGA	6 cut(s)	617, 876, 941, 961, 1387, 1574
Hpy188III	TCNNGA	9 cut(s)	190, 767, 851, 928, 948, 1170, 1181, 1306, 1522
Hpy8I	GTNNAC	3 cut(s)	339, 380, 559
Hpy99I	CGWCG	1 cut(s)	1176
HpyAV	CCTTC	6 cut(s)	173, 406, 595, 1274, 1366, 1646
HpyCH4III	ACNGT	6 cut(s)	403, 1176, 1397, 1410, 1516, 1701
HpyCH4V	TGCA	6 cut(s)	359, 584, 912, 979, 1110, 1335
HpyF10VI	GCNNNNNNNGC	3 cut(s)	506, 515, 802
HpyF3I	CTNAG	5 cut(s)	873, 1322, 1448, 1563, 1707
Hsp92II	CATG	8 cut(s)	193, 359, 1040, 1150, 1184, 1430, 1475, 1525
HspAI	GCGC	2 cut(s)	518, 1692
Ksp22I	TGATCA	2 cut(s)	699, 1302
Kzo9I	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
LmnI	GCTCC	1 cut(s)	950
LweI	GCATC	2 cut(s)	1119, 1391
MaeI	CTAG	2 cut(s)	233, 1568
MaeIII	GTNAC	4 cut(s)	73, 289, 536, 1207
MalI	GATC	9 cut(s)	237, 466, 607, 701, 864, 1134, 1151, 1304, 1533
MboI	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
MboII	GAAGA	4 cut(s)	604, 984, 1351, 1407
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	4 cut(s)	786, 935, 955, 1562
MlsI	TGGCCA	1 cut(s)	487
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	2 cut(s)	893, 1552
Mox20I	TGGCCA	1 cut(s)	487
Mph1103I	ATGCAT	1 cut(s)	1112
MscI	TGGCCA	1 cut(s)	487
MslI	CAYNNNNRTG	5 cut(s)	181, 298, 768, 791, 852
Msp20I	TGGCCA	1 cut(s)	487
MspR9I	CCNGG	2 cut(s)	456, 1230
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	2 cut(s)	456, 1230
MwoI	GCNNNNNNNGC	3 cut(s)	506, 515, 802
NdeII	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
NlaIII	CATG	8 cut(s)	193, 359, 1040, 1150, 1184, 1430, 1475, 1525
NlaIV	GGNNCC	3 cut(s)	761, 783, 784
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	536, 1207
NsiI	ATGCAT	1 cut(s)	1112
PagI	TCATGA	3 cut(s)	189, 1180, 1521
PcsI	WCGNNNNNNNCGW	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	924, 944, 962, 1553
PflFI	GACNNNGTC	1 cut(s)	1478
PflMI	CCANNNNNTGG	1 cut(s)	1502
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
PsiI	TTATAA	2 cut(s)	632, 1403
Psp124BI	GAGCTC	1 cut(s)	935
Psp6I	CCWGG	2 cut(s)	454, 1228
PspGI	CCWGG	2 cut(s)	454, 1228
PspN4I	GGNNCC	3 cut(s)	761, 783, 784
PspOMI	GGGCCC	1 cut(s)	782
PspPI	GGNCC	6 cut(s)	623, 760, 782, 783, 844, 1547
PsuI	RGATCY	1 cut(s)	605
PsyI	GACNNNGTC	1 cut(s)	1478
RseI	CAYNNNNRTG	5 cut(s)	181, 298, 768, 791, 852
SacI	GAGCTC	1 cut(s)	935
Sau3AI	GATC	9 cut(s)	235, 464, 605, 699, 862, 1132, 1149, 1302, 1531
Sau96I	GGNCC	6 cut(s)	623, 760, 782, 783, 844, 1547
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	2 cut(s)	456, 1230
SduI	GDGCHC	4 cut(s)	786, 935, 955, 1562
SfaNI	GCATC	2 cut(s)	1119, 1391
SinI	GGWCC	2 cut(s)	760, 844
SmiMI	CAYNNNNRTG	5 cut(s)	181, 298, 768, 791, 852
SmlI	CTYRAG	1 cut(s)	928
SmoI	CTYRAG	1 cut(s)	928
SspMI	CTAG	2 cut(s)	233, 1568
SstI	GAGCTC	1 cut(s)	935
StyD4I	CCNGG	2 cut(s)	454, 1228
StyI	CCWWGG	2 cut(s)	524, 1582
TaaI	ACNGT	6 cut(s)	403, 1176, 1397, 1410, 1516, 1701
TaqI	TCGA	4 cut(s)	204, 436, 743, 1556
TfiI	GAWTC	4 cut(s)	924, 944, 962, 1553
TscAI	CASTG	4 cut(s)	406, 981, 1489, 1519
TseFI	GTSAC	2 cut(s)	536, 1207
Tsp45I	GTSAC	2 cut(s)	536, 1207
TspDTI	ATGAA	8 cut(s)	178, 206, 636, 729, 827, 1169, 1407, 1510
TspGWI	ACGGA	2 cut(s)	1513, 1541
TspRI	CASTG	4 cut(s)	406, 981, 1489, 1519
Tth111I	GACNNNGTC	1 cut(s)	1478
Van91I	CCANNNNNTGG	1 cut(s)	1502
VpaK11BI	GGWCC	2 cut(s)	760, 844
XapI	RAATTY	9 cut(s)	270, 592, 642, 670, 815, 827, 1161, 1198, 1636
XmiI	GTMKAC	1 cut(s)	558
XspI	CTAG	2 cut(s)	233, 1568
Zsp2I	ATGCAT	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.