Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005645.1

Orthogroup ID

OG0003503

Physical Location & Seq

Genomic Coordinates Forward (+)

37032 .. 37616

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005645.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggctaagaccctccaaaacttcagttccctctgcaccattcccttgactcttctcctcctcttaacccttgtcggtgccagcgagcaccgcttctcaagacccttgtccccagccaaacttggcctaaagaaagagaaactgagccatctccggttctacttccacgacatagtcagcggccacagcccaacagccgttagggtcgctgaggctcccacgaccaaaaactcctccacggctttcggtgcagtggtgatgatggatgaccccttgactgccggaccggagctgggaaccaagctagtcggcaaggcacaaggcatttatgcttcggcctcgcaaaccgagttagggcttttgatggtgctgaactttgcttttgtggaagggaagtataatgggagtaatctgagcgtgttgggaaggaacgcggtgttctccgccgtgagggagatgccaatagttggcgggagcggccttttccggtttgctagggggtatgctcgtgctaggactcacaagattgatttgaacactggggatgctgtggtggagtataatgtctacgttctccattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent

Protein Analysis

194

Amino Acids

20.96

Weight (kDa)

9.64

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65870
fragaria_vesca	FvH4_6g21711 FvH4_6g21712
malus_domestica	MD12G1053900.v1.1 MD14G1052200.v1.1 MD14G1052400.v1.1 MD14G1052500.v1.1
prunus_persica	Prupe.7G083000_v2.0.a1 Prupe.7G083100_v2.0.a1
pyrus_communis	pycom14g04350 pycom14g04380
rosa_chinensis	RchiOBHm_Chr3g0478991 RchiOBHm_Chr3g0479011 RchiOBHm_Chr3g0479031
rosa_laevigata	RLG00000023611 RLG00000023613
rosa_multiflora	Rmu_sc0005645.1_g000007 Rmu_sc0005645.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402830 Rroxscaffold_6G00402840
rosa_rugosa	Rorug03G0170000 Rorug03G0170100 Rorug03G0304300
rosa_samantha	Rh3AG221000 Rh3AG221400 Rh3BG253200 Rh3BG253300 Rh3BG253700 Rh3CG249800 Rh3CG249900 Rh3DG245800 Rh3DG246000 Rh4AG008400
rosa_wichuraiana	Rw3G019880 Rw3G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccB7I	CCANNNNNTGG	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	477
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	1 cut(s)	434
AciI	CCGC	6 cut(s)	91, 180, 434, 444, 471, 477
AcoI	YGGCCR	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	7
AfiI	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
AgsI	TTSAA	1 cut(s)	535
AluBI	AGCT	2 cut(s)	292, 304
AluI	AGCT	2 cut(s)	292, 304
Alw21I	GWGCWC	1 cut(s)	90
AoxI	GGCC	4 cut(s)	124, 181, 336, 478
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	210
BccI	CCATC	3 cut(s)	156, 256, 358
BceAI	ACGGC	3 cut(s)	182, 255, 431
BfaI	CTAG	3 cut(s)	305, 495, 513
BisI	GCNGC	2 cut(s)	181, 478
BlsI	GCNGC	2 cut(s)	182, 479
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	3 cut(s)	79, 216, 298
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	447, 535
BmuI	ACTGGG	1 cut(s)	549
BoxI	GACNNNNGTC	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	3 cut(s)	153, 286, 486
Bsc4I	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
Bse1I	ACTGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	271, 550
BseLI	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
BseMII	CTCAG	3 cut(s)	134, 201, 404
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	3 cut(s)	47, 50, 223
BseYI	CCCAGC	2 cut(s)	112, 292
BsgI	GTGCAG	2 cut(s)	19, 270
Bsh1236I	CGCG	1 cut(s)	434
BshFI	GGCC	4 cut(s)	126, 183, 338, 480
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	4 cut(s)	154, 282, 287, 487
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	4 cut(s)	293, 354, 450, 467
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	4 cut(s)	126, 183, 338, 480
Bsp1286I	GDGCHC	1 cut(s)	90
BspACI	CCGC	6 cut(s)	91, 180, 434, 444, 471, 477
BspANI	GGCC	4 cut(s)	126, 183, 338, 480
BspCNI	CTCAG	3 cut(s)	135, 202, 405
BspFNI	CGCG	1 cut(s)	434
BspLI	GGNNCC	3 cut(s)	79, 216, 298
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	1 cut(s)	237
BssSI	CACGAG	1 cut(s)	507
Bst2BI	CACGAG	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	82, 86
BstDEI	CTNAG	4 cut(s)	6, 143, 210, 413
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	271, 550
BstFNI	CGCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 186, 248, 477
BstPAI	GACNNNNGTC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	126, 183, 338, 480
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	271, 550
BtsI	GCAGTG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	258, 537
Cac8I	GCNNGC	2 cut(s)	82, 86
Cfr13I	GGNCC	1 cut(s)	284
CpoI	CGGWCCG	1 cut(s)	284
CspI	CGGWCCG	1 cut(s)	284
DdeI	CTNAG	4 cut(s)	6, 143, 210, 413
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	7
FaiI	YATR	5 cut(s)	173, 330, 399, 504, 561
FaqI	GGGAC	1 cut(s)	94
FauI	CCCGC	1 cut(s)	464
FblI	GTMKAC	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	181, 478
FokI	GGATG	2 cut(s)	278, 557
Fsp4HI	GCNGC	2 cut(s)	181, 478
FspBI	CTAG	3 cut(s)	305, 495, 513
GluI	GCNGC	2 cut(s)	181, 478
GsaI	CCCAGC	2 cut(s)	116, 296
HaeIII	GGCC	4 cut(s)	126, 183, 338, 480
HapII	CCGG	4 cut(s)	154, 282, 287, 487
HinfI	GANTC	2 cut(s)	49, 517
HpaII	CCGG	4 cut(s)	154, 282, 287, 487
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	1 cut(s)	414
Hpy188III	TCNNGA	1 cut(s)	99
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	2 cut(s)	383, 420
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	36, 251
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 186, 248, 477
HpyF3I	CTNAG	4 cut(s)	6, 143, 210, 413
HpySE526I	ACGT	1 cut(s)	570
LmnI	GCTCC	3 cut(s)	220, 289, 474
LpnPI	CCDG	8 cut(s)	94, 126, 167, 278, 295, 300, 500, 525
LweI	GCATC	2 cut(s)	447, 535
MaeI	CTAG	3 cut(s)	305, 495, 513
MaeII	ACGT	1 cut(s)	570
MbiI	CCGCTC	1 cut(s)	477
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	43, 511
MnlI	CCTC	8 cut(s)	23, 41, 68, 71, 205, 244, 349, 444
MseI	TTAA	1 cut(s)	65
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	4 cut(s)	154, 282, 287, 487
MvnI	CGCG	1 cut(s)	434
MwoI	GCNNNNNNNGC	4 cut(s)	90, 186, 248, 477
NlaIV	GGNNCC	3 cut(s)	79, 216, 298
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PflFI	GACNNNGTC	1 cut(s)	173
PflMI	CCANNNNNTGG	1 cut(s)	467
PkrI	GCNGC	2 cut(s)	182, 479
PleI	GAGTC	2 cut(s)	43, 511
PpsI	GAGTC	2 cut(s)	43, 511
PshAI	GACNNNNGTC	1 cut(s)	106
PspFI	CCCAGC	2 cut(s)	112, 292
PspN4I	GGNNCC	3 cut(s)	79, 216, 298
PspPI	GGNCC	1 cut(s)	284
PsyI	GACNNNGTC	1 cut(s)	173
Rsr2I	CGGWCCG	1 cut(s)	284
RsrII	CGGWCCG	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	2 cut(s)	181, 478
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	43, 511
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	3 cut(s)	294, 306, 573
SfaNI	GCATC	2 cut(s)	447, 535
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SsiI	CCGC	6 cut(s)	91, 180, 434, 444, 471, 477
SspMI	CTAG	3 cut(s)	305, 495, 513
TaiI	ACGT	1 cut(s)	573
TauI	GCSGC	2 cut(s)	183, 480
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	258, 544
TspRI	CASTG	2 cut(s)	258, 544
Tth111I	GACNNNGTC	1 cut(s)	173
Van91I	CCANNNNNTGG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	567
XspI	CTAG	3 cut(s)	305, 495, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.