Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009701

Physical Location & Seq

Genomic Coordinates Forward (+)

15948585 .. 15949629

Gene Structure 1045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCATCACGAGAGATAGCGATCATCGGAATGGGTTTTGTTTTTTTTCTGGTGGTTGTGCCGCTTACCTCCAAAGCACTTTCGGGTGGTCATCGCCGTCAACATATCAATGCATACGGCGATGATCCCGGCTATGATCTGGTGTTATTTGTCCTACAAGTCACTAATCCTCGTGACAAGGAGAATGGACCTTACTTAACCATCTTCGGCCTTTGGGCCGAATATCTTCAGAATGGGGCCCCCCCTGAGACCGGGTACGTTATATATCGGGGATATACAGACTGTCTCGAAAATAGCCATATTACATTTAGTTACGGCATGCTTCAACCGTACCTAAGAAAGAGGCTCCATGTAATATGGCCAACCAGAAGAGACGGAAGCTACCCAACAGACCGGGCCTTTTGGCTGCACGAAGTTGATAAACATGGGACCTGTATGGCAGATATATTCGGACGGGGGGAGCAGTACCTACAAAAGGCAAAAGAATTGTATGAGCAGATCGGGATAGGCCAGTTCTTGGGTCGTAACGGAAGGTGGCTGCCAAAAATTGAATTCAATACCGCGGATTTACTGGGGGCGATCGGTACTGAACGCAGACCACTATTAGAATGTGAAGGAAATCATCTCGTCAGAATTTTATTCTGCTACAGCAAACACTGGGTGATTAAACCCTGCTTGCCCACCCACCCCGATCCAGCAAGAGATTGTCCCGATAGGATTTCTTATGTTCTGCCGCAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

249

Amino Acids

28.46

Weight (kDa)

7.66

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	57 - 218	5e-11	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22290 FvH4_6g22334 FvH4_6g22981
rosa_chinensis	RchiOBHm_Chr3g0476241 RchiOBHm_Chr3g0477761 RchiOBHm_Chr3g0477801 RchiOBHm_Chr3g0479851
rosa_laevigata	RLG00000023532
rosa_multiflora	Rmu_sc0017867.1_g000005
rosa_samantha	Rh3AG213600 Rh3AG213700 Rh3AG213900 Rh3AG229700 Rh3AG229800 Rh3BG247500 Rh3CG241400 Rh3CG259700 Rh3DG240600 Rh3DG240700 Rh3DG240800 Rh3DG255900
rosa_wichuraiana	Rw3G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	517
AccII	CGCG	1 cut(s)	563
AciI	CCGC	4 cut(s)	62, 561, 563, 734
AclWI	GGATC	2 cut(s)	119, 686
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	551, 633
AcuI	CTGAAG	1 cut(s)	212
AdeI	CACNNNGTG	1 cut(s)	661
AfaI	GTAC	4 cut(s)	257, 332, 467, 586
AfiI	CCNNNNNNNGG	3 cut(s)	251, 475, 517
AgsI	TTSAA	3 cut(s)	326, 551, 556
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	242, 290, 366
AlwI	GGATC	2 cut(s)	119, 686
AoxI	GGCC	6 cut(s)	208, 216, 237, 359, 396, 508
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	4 cut(s)	406, 538, 736, 739
ApoI	RAATTY	2 cut(s)	551, 633
Asp700I	GAANNNNTTC	1 cut(s)	225
AspS9I	GGNCC	6 cut(s)	188, 216, 237, 238, 396, 429
AsuC2I	CCSGG	3 cut(s)	129, 253, 395
AsuHPI	GGTGA	1 cut(s)	673
AvaII	GGWCC	2 cut(s)	188, 429
BaeGI	GKGCMC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	241
BauI	CACGAG	2 cut(s)	9, 171
BbvI	GCAGC	2 cut(s)	393, 525
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	3 cut(s)	81, 133, 331
BcnI	CCSGG	3 cut(s)	129, 253, 395
BcoDI	GTCTC	3 cut(s)	242, 290, 366
BfmI	CTRYAG	1 cut(s)	646
BisI	GCNGC	6 cut(s)	62, 407, 539, 734, 737, 740
BlsI	GCNGC	6 cut(s)	63, 408, 540, 735, 738, 741
Bme1390I	CCNGG	3 cut(s)	129, 253, 395
Bme18I	GGWCC	2 cut(s)	188, 429
BmgT120I	GGNCC	6 cut(s)	188, 216, 237, 238, 396, 429
BmiI	GGNNCC	5 cut(s)	238, 239, 240, 347, 430
BmrFI	CCNGG	3 cut(s)	129, 253, 395
BmrI	ACTGGG	2 cut(s)	581, 667
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	2 cut(s)	581, 667
BpuMI	CCSGG	3 cut(s)	129, 253, 395
BsaBI	GATNNNNATC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 475, 517
Bse1I	ACTGG	3 cut(s)	511, 576, 662
Bse8I	GATNNNNATC	1 cut(s)	20
BseDI	CCNNGG	1 cut(s)	561
BseJI	GATNNNNATC	1 cut(s)	20
BseLI	CCNNNNNNNGG	3 cut(s)	251, 475, 517
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	3 cut(s)	511, 576, 662
BseSI	GKGCMC	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	393, 525
BsgI	GTGCAG	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	563
Bsh1285I	CGRYCG	1 cut(s)	582
BshFI	GGCC	6 cut(s)	210, 218, 239, 361, 398, 510
BsiEI	CGRYCG	1 cut(s)	582
BsiSI	CCGG	3 cut(s)	129, 252, 394
BslFI	GGGAC	2 cut(s)	442, 693
BslI	CCNNNNNNNGG	3 cut(s)	251, 475, 517
BsmAI	GTCTC	3 cut(s)	242, 290, 366
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	2 cut(s)	442, 693
BsnI	GGCC	6 cut(s)	210, 218, 239, 361, 398, 510
Bso31I	GGTCTC	1 cut(s)	242
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
BspACI	CCGC	4 cut(s)	62, 561, 563, 734
BspANI	GGCC	6 cut(s)	210, 218, 239, 361, 398, 510
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	5 cut(s)	238, 239, 240, 347, 430
BspPI	GGATC	2 cut(s)	119, 686
BspTNI	GGTCTC	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	511, 576, 662
BssECI	CCNNGG	1 cut(s)	561
BssMI	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
BssSI	CACGAG	2 cut(s)	9, 171
Bst2BI	CACGAG	2 cut(s)	9, 171
Bst4CI	ACNGT	2 cut(s)	284, 330
Bst6I	CTCTTC	1 cut(s)	364
BstC8I	GCNNGC	2 cut(s)	320, 677
BstDEI	CTNAG	2 cut(s)	246, 335
BstDSI	CCRYGG	1 cut(s)	561
BstENI	CCTNNNNNAGG	1 cut(s)	473
BstFNI	CGCG	1 cut(s)	563
BstKTI	GATC	6 cut(s)	24, 127, 139, 501, 582, 694
BstMAI	GTCTC	3 cut(s)	242, 290, 366
BstMBI	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	1 cut(s)	739
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	127, 251, 393
BstSFI	CTRYAG	1 cut(s)	646
BstSLI	GKGCMC	1 cut(s)	241
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	2 cut(s)	393, 525
BsuRI	GGCC	6 cut(s)	210, 218, 239, 361, 398, 510
BtgI	CCRYGG	1 cut(s)	561
BtgZI	GCGATG	2 cut(s)	77, 135
BtsIMutI	CAGTG	1 cut(s)	655
Cac8I	GCNNGC	2 cut(s)	320, 677
Cfr13I	GGNCC	6 cut(s)	188, 216, 237, 238, 396, 429
Cfr42I	CCGCGG	1 cut(s)	564
Csp6I	GTAC	4 cut(s)	256, 331, 466, 585
CviAII	CATG	3 cut(s)	319, 350, 425
CviQI	GTAC	4 cut(s)	256, 331, 466, 585
DdeI	CTNAG	2 cut(s)	246, 335
DpnI	GATC	6 cut(s)	23, 126, 138, 500, 581, 693
DpnII	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
DraIII	CACNNNGTG	1 cut(s)	661
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	241
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	188, 429
Eco57I	CTGAAG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	473
EcoO109I	RGGNCCY	3 cut(s)	237, 238, 429
EcoRI	GAATTC	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	3 cut(s)	322, 353, 428
FaqI	GGGAC	2 cut(s)	442, 693
FatI	CATG	3 cut(s)	318, 349, 424
Fnu4HI	GCNGC	6 cut(s)	62, 407, 539, 734, 737, 740
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	6 cut(s)	62, 407, 539, 734, 737, 740
GluI	GCNGC	6 cut(s)	62, 407, 539, 734, 737, 740
HaeIII	GGCC	6 cut(s)	210, 218, 239, 361, 398, 510
HapII	CCGG	3 cut(s)	129, 252, 394
Hin1II	CATG	3 cut(s)	322, 353, 428
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HpaII	CCGG	3 cut(s)	129, 252, 394
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	4 cut(s)	29, 231, 452, 632
Hpy188III	TCNNGA	5 cut(s)	9, 173, 287, 502, 710
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	525, 608
HpyCH4III	ACNGT	2 cut(s)	284, 330
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	113, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	739
HpyF3I	CTNAG	2 cut(s)	246, 335
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	322, 353, 428
KspI	CCGCGG	1 cut(s)	564
Kzo9I	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
LmnI	GCTCC	2 cut(s)	351, 460
Lsp1109I	GCAGC	2 cut(s)	393, 525
LweI	GCATC	1 cut(s)	14
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	160, 173, 311, 524
MalI	GATC	6 cut(s)	23, 126, 138, 500, 581, 693
MboI	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
MboII	GAAGA	3 cut(s)	196, 218, 381
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	4 cut(s)	485, 546, 551, 633
MluNI	TGGCCA	1 cut(s)	361
MnlI	CCTC	3 cut(s)	79, 180, 336
Mox20I	TGGCCA	1 cut(s)	361
Mph1103I	ATGCAT	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	225
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	2 cut(s)	197, 666
MslI	CAYNNNNRTG	2 cut(s)	29, 108
Msp20I	TGGCCA	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	3 cut(s)	129, 252, 394
MspR9I	CCNGG	3 cut(s)	129, 253, 395
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	1 cut(s)	739
NciI	CCSGG	3 cut(s)	129, 253, 395
NdeII	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
NlaIII	CATG	3 cut(s)	322, 353, 428
NlaIV	GGNNCC	5 cut(s)	238, 239, 240, 347, 430
NmuCI	GTSAC	2 cut(s)	160, 173
NsiI	ATGCAT	1 cut(s)	115
NspI	RCATGY	1 cut(s)	322
PaeI	GCATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	517
PkrI	GCNGC	6 cut(s)	63, 408, 540, 735, 738, 741
Ple19I	CGATCG	1 cut(s)	582
PpuMI	RGGWCCY	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	429
PspN4I	GGNNCC	5 cut(s)	238, 239, 240, 347, 430
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	6 cut(s)	188, 216, 237, 238, 396, 429
PspPPI	RGGWCCY	1 cut(s)	429
PvuI	CGATCG	1 cut(s)	582
RsaI	GTAC	4 cut(s)	257, 332, 467, 586
RsaNI	GTAC	4 cut(s)	256, 331, 466, 585
RseI	CAYNNNNRTG	2 cut(s)	29, 108
SacII	CCGCGG	1 cut(s)	564
SaqAI	TTAA	2 cut(s)	197, 666
SatI	GCNGC	6 cut(s)	62, 407, 539, 734, 737, 740
Sau3AI	GATC	6 cut(s)	21, 124, 136, 498, 579, 691
Sau96I	GGNCC	6 cut(s)	188, 216, 237, 238, 396, 429
ScrFI	CCNGG	3 cut(s)	129, 253, 395
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	8 cut(s)	71, 193, 261, 336, 383, 434, 471, 536
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	646
Sfr303I	CCGCGG	1 cut(s)	564
SgrBI	CCGCGG	1 cut(s)	564
SinI	GGWCC	2 cut(s)	188, 429
SmiMI	CAYNNNNRTG	2 cut(s)	29, 108
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	4 cut(s)	485, 546, 551, 633
SsiI	CCGC	4 cut(s)	62, 561, 563, 734
StyD4I	CCNGG	3 cut(s)	127, 251, 393
TaaI	ACNGT	2 cut(s)	284, 330
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	288
TasI	AATT	4 cut(s)	485, 546, 551, 633
TauI	GCSGC	2 cut(s)	64, 736
Tru1I	TTAA	2 cut(s)	197, 666
Tru9I	TTAA	2 cut(s)	197, 666
TscAI	CASTG	1 cut(s)	662
TseFI	GTSAC	2 cut(s)	160, 173
TseI	GCWGC	4 cut(s)	406, 538, 736, 739
Tsp45I	GTSAC	2 cut(s)	160, 173
TspGWI	ACGGA	2 cut(s)	390, 543
TspRI	CASTG	1 cut(s)	662
Van91I	CCANNNNNTGG	1 cut(s)	517
VpaK11BI	GGWCC	2 cut(s)	188, 429
XagI	CCTNNNNNAGG	1 cut(s)	473
XapI	RAATTY	2 cut(s)	551, 633
XceI	RCATGY	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	225
Zsp2I	ATGCAT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.