Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009701

Physical Location & Seq

Genomic Coordinates Reverse (-)

23128157 .. 23132885

Gene Structure 4729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAAATCATTTATTTTCTTGCTTTCATATTATTTTTATTTCCCGCAACTGTGCCAGCACAGACAAAAGGTTACGAGTATATCATGCTGGTCCTCCAAAATCCTTTTAACAGGAATGGCGCTAGTCCTTGGACCATACATGGCCTGTGGGCCGAGAGACTTCAAGGACCATCTCCTAACTATAAATTTGTTCCGGTTAATAGTTGTCCATCAGCCCCTCCATTTAACAGTGAGATTAATAGCGACATTCAAGCTGCACTAATTAAAGCTTGGCCCAGTATTATGGGTAAACCAAACCAAAGAGTTTGGGAACATGAATGGAGAAAACACGGTTCATGTACCACAGATTTATTACCAACTTCTAATGACTACCTACTGAAAGGAGTTTACCTGTGGGAGCAAATCAAGTTTCATGATTTGATGGGTGTGGGTCCGGGTGCCCAATTTAAGCCAAATACTCAATATGATGCGAACACGGTGCTGGCGGCCATCACAAGCAAATACAAGGTCAAAACAATGCTGACCTGTCAGGCTGGGGAAATATTGGATGTTAGGTTTTGTTATTTAGGACCTTGGGTATTGGTAGATTGCCTGGACACCCAACCACCTCCCCATACAGTTTGTACAGGTTTAATTTATTATCCTAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005615 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044421 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

217

Amino Acids

24.6

Weight (kDa)

7.61

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	39 - 188	1.3e-22	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22290 FvH4_6g22334 FvH4_6g22981
rosa_chinensis	RchiOBHm_Chr3g0476241 RchiOBHm_Chr3g0477761 RchiOBHm_Chr3g0477801 RchiOBHm_Chr3g0479851
rosa_laevigata	RLG00000023532
rosa_multiflora	Rmu_sc0017867.1_g000005
rosa_samantha	Rh3AG213600 Rh3AG213700 Rh3AG213900 Rh3AG229700 Rh3AG229800 Rh3BG247500 Rh3CG241400 Rh3CG259700 Rh3DG240600 Rh3DG240700 Rh3DG240800 Rh3DG255900
rosa_wichuraiana	Rw3G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AciI	CCGC	2 cut(s)	45, 485
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	2 cut(s)	340, 625
AgsI	TTSAA	2 cut(s)	164, 251
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	2 cut(s)	254, 269
AluI	AGCT	2 cut(s)	254, 269
Alw26I	GTCTC	1 cut(s)	151
AoxI	GGCC	4 cut(s)	142, 150, 272, 486
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	185
ArsI	GACNNNNNNTTYG	2 cut(s)	492, 524
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	7 cut(s)	91, 132, 150, 167, 273, 431, 569
AsuC2I	CCSGG	1 cut(s)	435
AvaII	GGWCC	5 cut(s)	91, 132, 167, 431, 569
BaeGI	GKGCMC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	437
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	4 cut(s)	178, 217, 415, 497
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	1 cut(s)	593
BcnI	CCSGG	1 cut(s)	435
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	2 cut(s)	123, 645
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	2 cut(s)	255, 486
BlsI	GCNGC	2 cut(s)	256, 487
Bme1390I	CCNGG	2 cut(s)	435, 593
Bme18I	GGWCC	5 cut(s)	91, 132, 167, 431, 569
BmgT120I	GGNCC	7 cut(s)	91, 132, 150, 167, 273, 431, 569
BmiI	GGNNCC	2 cut(s)	432, 439
BmrFI	CCNGG	2 cut(s)	435, 593
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	457
BmuI	ACTGGG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	128, 572
BsaWI	WCCGGW	1 cut(s)	193
Bse1I	ACTGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	128, 572
BseGI	GGATG	1 cut(s)	553
BseNI	ACTGG	1 cut(s)	276
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	533
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	4 cut(s)	144, 152, 274, 488
BshNI	GGYRCC	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	194, 434
BsmAI	GTCTC	1 cut(s)	151
BsnI	GGCC	4 cut(s)	144, 152, 274, 488
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp1407I	TGTACA	1 cut(s)	623
BspACI	CCGC	2 cut(s)	45, 485
BspANI	GGCC	4 cut(s)	144, 152, 274, 488
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	432, 439
BspT107I	GGYRCC	1 cut(s)	437
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	276
BssECI	CCNNGG	2 cut(s)	128, 572
BssT1I	CCWWGG	2 cut(s)	128, 572
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	5 cut(s)	52, 230, 332, 478, 619
BstAUI	TGTACA	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	57, 483
BstF5I	GGATG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	151
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	433, 591
BstSLI	GKGCMC	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	283
BsuRI	GGCC	4 cut(s)	144, 152, 274, 488
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	57, 483
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	7 cut(s)	91, 132, 150, 167, 273, 431, 569
Csp6I	GTAC	2 cut(s)	339, 624
CviAII	CATG	5 cut(s)	85, 140, 314, 336, 413
CviJI	RGCY	9 cut(s)	144, 152, 215, 254, 269, 274, 451, 488, 533
CviKI_1	RGCY	9 cut(s)	144, 152, 215, 254, 269, 274, 451, 488, 533
CviQI	GTAC	2 cut(s)	339, 624
EaeI	YGGCCR	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	128, 572
Eco47I	GGWCC	5 cut(s)	91, 132, 167, 431, 569
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	128, 572
ErhI	CCWWGG	2 cut(s)	128, 572
FaeI	CATG	5 cut(s)	88, 143, 317, 339, 416
FatI	CATG	5 cut(s)	84, 139, 313, 335, 412
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	255, 486
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	255, 486
FspBI	CTAG	2 cut(s)	123, 645
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	255, 486
GsaI	CCCAGC	1 cut(s)	537
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	144, 152, 274, 488
HapII	CCGG	2 cut(s)	194, 434
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	5 cut(s)	88, 143, 317, 339, 416
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	267
HpaII	CCGG	2 cut(s)	194, 434
Hpy166II	GTNNAC	2 cut(s)	290, 388
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	2 cut(s)	290, 388
HpyCH4III	ACNGT	5 cut(s)	52, 230, 332, 478, 619
HpyCH4V	TGCA	1 cut(s)	257
Hsp92II	CATG	5 cut(s)	88, 143, 317, 339, 416
HspAI	GCGC	1 cut(s)	120
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	2 cut(s)	123, 645
MaeIII	GTNAC	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	4 cut(s)	185, 261, 443, 633
MnlI	CCTC	3 cut(s)	104, 228, 618
MseI	TTAA	7 cut(s)	108, 198, 225, 237, 264, 447, 632
MspI	CCGG	2 cut(s)	194, 434
MspR9I	CCNGG	2 cut(s)	435, 593
MvaI	CCWGG	1 cut(s)	593
NciI	CCSGG	1 cut(s)	435
NlaIII	CATG	5 cut(s)	88, 143, 317, 339, 416
NlaIV	GGNNCC	2 cut(s)	432, 439
NmeAIII	GCCGAG	1 cut(s)	178
PagI	TCATGA	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	256, 487
PpuMI	RGGWCCY	1 cut(s)	569
PshBI	ATTAAT	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	591
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	432, 439
PspPI	GGNCC	7 cut(s)	91, 132, 150, 167, 273, 431, 569
PspPPI	RGGWCCY	1 cut(s)	569
RsaI	GTAC	2 cut(s)	340, 625
RsaNI	GTAC	2 cut(s)	339, 624
SaqAI	TTAA	7 cut(s)	108, 198, 225, 237, 264, 447, 632
SatI	GCNGC	2 cut(s)	255, 486
Sau96I	GGNCC	7 cut(s)	91, 132, 150, 167, 273, 431, 569
ScrFI	CCNGG	2 cut(s)	435, 593
SduI	GDGCHC	1 cut(s)	442
SfaNI	GCATC	1 cut(s)	457
SinI	GGWCC	5 cut(s)	91, 132, 167, 431, 569
Sse9I	AATT	4 cut(s)	185, 261, 443, 633
SsiI	CCGC	2 cut(s)	45, 485
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	2 cut(s)	123, 645
StyD4I	CCNGG	2 cut(s)	433, 591
StyI	CCWWGG	2 cut(s)	128, 572
TaaI	ACNGT	5 cut(s)	52, 230, 332, 478, 619
TasI	AATT	4 cut(s)	185, 261, 443, 633
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	1 cut(s)	488
Tru1I	TTAA	7 cut(s)	108, 198, 225, 237, 264, 447, 632
Tru9I	TTAA	7 cut(s)	108, 198, 225, 237, 264, 447, 632
TscAI	CASTG	1 cut(s)	235
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	4 cut(s)	16, 324, 330, 401
TspRI	CASTG	1 cut(s)	235
VpaK11BI	GGWCC	5 cut(s)	91, 132, 167, 431, 569
VspI	ATTAAT	1 cut(s)	237
XapI	RAATTY	1 cut(s)	185
XspI	CTAG	2 cut(s)	123, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.