Rw3G020680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0009701
Physical Location & Seq
Reverse (-)
24487879 .. 24488488
610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020680.1

Sequence Viewer

Length: 228 bp
ATGCTGCTGCTGAAACAATCCAAGCCTGAGGGAAAAGAGGAGAGTGAAGAGCTGAAAAGCCTGGGCCTATTATATCGAAGTTTTCTCTGGGACTCTGGAAGACCAGAGGCTGATCTGGGCAAAAGGAGAAAGAGTCCAGATCTGATCATGTTCTGTGTGCAATTTCAAAGATTTAAGAGTGATCTGGAGTGGGCGCTACACTGCTACTGGTATTGCGTGCAAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.96

Weight (kDa)

7.7

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 60
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AlwNI CAGNNNCTG 1 cut(s) 110
AoxI GGCC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 4, 7
AspLEI GCGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 64
AxyI CCTNAGG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 106
BciT130I CCWGG 1 cut(s) 62
BclI TGATCA 1 cut(s) 144
BfoI RGCGCY 1 cut(s) 197
BglII AGATCT 1 cut(s) 139
BisI GCNGC 2 cut(s) 5, 8
BlsI GCNGC 2 cut(s) 6, 9
Bme1390I CCNGG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bse1I ACTGG 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 53
BshFI GGCC 1 cut(s) 66
BslFI GGGAC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 66
Bsp143I GATC 4 cut(s) 112, 139, 144, 181
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 4 cut(s) 112, 139, 144, 181
Bst2UI CCWGG 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 2 cut(s) 27, 225
BstH2I RGCGCY 1 cut(s) 197
BstHHI GCGC 1 cut(s) 196
BstKTI GATC 4 cut(s) 115, 142, 147, 184
BstMBI GATC 4 cut(s) 112, 139, 144, 181
BstNI CCWGG 1 cut(s) 62
BstSCI CCNGG 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
Bsu36I CCTNAGG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 199
BtsIMutI CAGTG 1 cut(s) 199
Cac8I GCNNGC 1 cut(s) 218
CaiI CAGNNNCTG 1 cut(s) 110
CfoI GCGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 1 cut(s) 148
CviJI RGCY 5 cut(s) 25, 52, 60, 66, 110
CviKI_1 RGCY 5 cut(s) 25, 52, 60, 66, 110
DdeI CTNAG 2 cut(s) 27, 225
DpnI GATC 4 cut(s) 114, 141, 146, 183
DpnII GATC 4 cut(s) 112, 139, 144, 181
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco81I CCTNAGG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 73, 149
FaqI GGGAC 1 cut(s) 104
FatI CATG 1 cut(s) 147
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 5, 8
Fsp4HI GCNGC 2 cut(s) 5, 8
GlaI GCGC 1 cut(s) 195
GluI GCNGC 2 cut(s) 5, 8
GsuI CTGGAG 1 cut(s) 206
HaeII RGCGCY 1 cut(s) 197
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 1 cut(s) 194
HinP1I GCGC 1 cut(s) 194
HinfI GANTC 2 cut(s) 92, 133
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 96, 137, 185
HpyCH4V TGCA 2 cut(s) 160, 220
HpyF3I CTNAG 2 cut(s) 27, 225
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 1 cut(s) 194
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 4 cut(s) 112, 139, 144, 181
LguI GCTCTTC 1 cut(s) 42
MalI GATC 4 cut(s) 114, 141, 146, 183
MboI GATC 4 cut(s) 112, 139, 144, 181
MboII GAAGA 2 cut(s) 59, 111
MflI RGATCY 1 cut(s) 139
MluCI AATT 1 cut(s) 161
MlyI GAGTC 2 cut(s) 86, 142
MnlI CCTC 3 cut(s) 22, 31, 100
MseI TTAA 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 62
MvaI CCWGG 1 cut(s) 62
NdeII GATC 4 cut(s) 112, 139, 144, 181
NlaIII CATG 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 42
PkrI GCNGC 2 cut(s) 6, 9
PleI GAGTC 2 cut(s) 86, 141
PpsI GAGTC 2 cut(s) 86, 141
Psp6I CCWGG 1 cut(s) 60
PspGI CCWGG 1 cut(s) 60
PspPI GGNCC 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 2 cut(s) 5, 8
Sau3AI GATC 4 cut(s) 112, 139, 144, 181
Sau96I GGNCC 1 cut(s) 64
SchI GAGTC 2 cut(s) 86, 142
ScrFI CCNGG 1 cut(s) 62
SetI ASST 1 cut(s) 54
Sse9I AATT 1 cut(s) 161
StyD4I CCNGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 76
TasI AATT 1 cut(s) 161
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 206
TseI GCWGC 2 cut(s) 4, 7
TspRI CASTG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.