Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009701

Physical Location & Seq

Genomic Coordinates Forward (+)

25646027 .. 25649559

Gene Structure 3533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAACTCACTTACTTTCTTGTTTTTTTGTTGTGTTTTTTGCCCACTCTACCAGCACAACAAAACCAACAAATTTACGATATTCTCTTTATGGTCCTACAGAATCCTTCGACCTTAAAAGGCAAGGCTCCCTGGGGCATACATGGTATTTGGGCAGAAAAACTTGATCCACTTGTAGGGCCATCTCCACAAAGGTATAAGTATGTGCCAGTTCAATCGTGTCAATCATTTCCTCCATTTGACCCTAAGATTAGTCAAAAAATTACAAAGGCACTCGATAAAGCTTGGTCGAGTCTTTCGGCTACGTGGCCAAACGTTAAATTTTGGGAACATGAATATAACAAACACGGTTCATGTATCGTAGATTTATTACCAACTTCTACGGATTACCTAATGAAAGCACTTTACCTGTGGGAGCAACTCAAGTTTGACGAGGTGATGGGTAAGGGTAAGCAATTTGAGCCAAATACACTATACAAAACCGAGGATATTCTTAAGGGCATCAAAGTTTCACATAATGTTCGACCAGAATTGACCTGTATCGGTAATAAACTAACAGATGTTAGGTTTTGTCATACAAGAAATTGGGTATTGGTAGATTGCGAGGGCATCCAAACATCTTGTACAGGTCAAATTAAATATGTTAGGCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

218

Amino Acids

25.16

Weight (kDa)

8.59

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	36 - 201	7.6e-24	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22290 FvH4_6g22334 FvH4_6g22981
rosa_chinensis	RchiOBHm_Chr3g0476241 RchiOBHm_Chr3g0477761 RchiOBHm_Chr3g0477801 RchiOBHm_Chr3g0479851
rosa_laevigata	RLG00000023532
rosa_multiflora	Rmu_sc0017867.1_g000005
rosa_samantha	Rh3AG213600 Rh3AG213700 Rh3AG213900 Rh3AG229700 Rh3AG229800 Rh3BG247500 Rh3CG241400 Rh3CG259700 Rh3DG240600 Rh3DG240700 Rh3DG240800 Rh3DG255900
rosa_wichuraiana	Rw3G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	1 cut(s)	161
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	72, 320
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	1 cut(s)	284
AluI	AGCT	1 cut(s)	284
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	179, 308
ApoI	RAATTY	2 cut(s)	72, 320
AspS9I	GGNCC	2 cut(s)	94, 179
AsuHPI	GGTGA	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	310
BccI	CCATC	2 cut(s)	190, 433
BciT130I	CCWGG	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	94, 179
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	133
BmsI	GCATC	2 cut(s)	510, 618
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	131, 132, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	3 cut(s)	131, 132, 483
BseGI	GGATG	1 cut(s)	609
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	209
BshFI	GGCC	2 cut(s)	181, 310
BslI	CCNNNNNNNGG	1 cut(s)	176
BsnI	GGCC	2 cut(s)	181, 310
Bsp1407I	TGTACA	1 cut(s)	623
Bsp143I	GATC	1 cut(s)	166
BspANI	GGCC	2 cut(s)	181, 310
BspLI	GGNNCC	1 cut(s)	129
BspPI	GGATC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	131, 132, 483
BssMI	GATC	1 cut(s)	166
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	306
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	609
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	181, 310
BtsCI	GGATG	1 cut(s)	609
Cfr13I	GGNCC	2 cut(s)	94, 179
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	3 cut(s)	143, 332, 354
CviJI	RGCY	6 cut(s)	128, 181, 284, 302, 310, 463
CviKI_1	RGCY	6 cut(s)	128, 181, 284, 302, 310, 463
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	131
FaeI	CATG	3 cut(s)	146, 335, 357
FatI	CATG	3 cut(s)	142, 331, 353
FokI	GGATG	1 cut(s)	596
HaeIII	GGCC	2 cut(s)	181, 310
Hin1II	CATG	3 cut(s)	146, 335, 357
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	2 cut(s)	103, 292
HphI	GGTGA	1 cut(s)	448
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	2 cut(s)	305, 315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	2 cut(s)	305, 315
Hsp92II	CATG	3 cut(s)	146, 335, 357
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	133, 415
LpnPI	CCDG	8 cut(s)	66, 118, 145, 222, 422, 540, 550, 612
LweI	GCATC	2 cut(s)	510, 618
MaeII	ACGT	2 cut(s)	305, 315
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	7 cut(s)	72, 261, 320, 455, 530, 583, 633
MluNI	TGGCCA	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	4 cut(s)	243, 427, 478, 598
Mox20I	TGGCCA	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	4 cut(s)	116, 318, 495, 636
Msp20I	TGGCCA	1 cut(s)	310
MspCI	CTTAAG	1 cut(s)	494
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	146, 335, 357
NlaIV	GGNNCC	1 cut(s)	129
PasI	CCCWGGG	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	103
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Ppu21I	YACGTR	1 cut(s)	306
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	94, 179
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SaqAI	TTAA	4 cut(s)	116, 318, 495, 636
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	94, 179
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	133
SfaNI	GCATC	2 cut(s)	510, 618
SfcI	CTRYAG	1 cut(s)	98
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	422, 494
SmoI	CTYRAG	2 cut(s)	422, 494
Sse9I	AATT	7 cut(s)	72, 261, 320, 455, 530, 583, 633
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	2 cut(s)	308, 318
TaqI	TCGA	4 cut(s)	110, 276, 290, 523
TasI	AATT	7 cut(s)	72, 261, 320, 455, 530, 583, 633
TatI	WGTACW	1 cut(s)	623
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	4 cut(s)	116, 318, 495, 636
Tru9I	TTAA	4 cut(s)	116, 318, 495, 636
TspDTI	ATGAA	3 cut(s)	342, 348, 410
TspGWI	ACGGA	1 cut(s)	398
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	2 cut(s)	72, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.