Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009701

Physical Location & Seq

Genomic Coordinates Reverse (-)

21560647 .. 21561459

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG213700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAATCATTTATTTTCTTGCTTTCATATTATTTTTATCCCCCGCAACTGTGCCAGCACAGACAAACAAAGGTTACGACTATATCACGCTGGTCATCCAAAATCCTTATAGCATGAATAGCTCTACTCCTTGGACCATACATGGCCTGTGGGCCCAGAAACTTCAAGGACAATCTCCTAACTATACATTTGTGCCAGTTAATAGATGTCCATCAGCCCCTCCATTTAACAGTAATATTAGTAGCGACGTTCAAGCTGCACTAACTAAAGCTTGGCCTGGTATTTCGGGTAAAGCAGACCTTAAATTTTGGGAACAAGAATATGAGAAACATGGTTCATGTACCATAGATTTACTGCCAACTTCTAATGACTACCTACTGAAAGGAGCTTACCTGTGGGAGCAAATCAAGTTTGATGATTTGATGGGTGTGGGTCCGGGTGCCCAATTTATGCCAAATACTCAATATGATGCGAACACGGTGGTGGCGGCCATCACAAGCAAATATAAGGTCAAAACAATATTGATCTGTGCGGATGACTCCATAGTGCATGTTAGGTTTTGTTATGTAGGAAGTTGGGTACTGGTAGATTGCCTGGACACCCAACCAGATCCCCAAACAGTTTGTACGGGTTTTATTCAGTATATTAGAAAGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005615 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044421 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

219

Amino Acids

24.59

Weight (kDa)

5.53

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	40 - 189	4e-20	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22290 FvH4_6g22334 FvH4_6g22981
rosa_chinensis	RchiOBHm_Chr3g0476241 RchiOBHm_Chr3g0477761 RchiOBHm_Chr3g0477801 RchiOBHm_Chr3g0479851
rosa_laevigata	RLG00000023532
rosa_multiflora	Rmu_sc0017867.1_g000005
rosa_samantha	Rh3AG213600 Rh3AG213700 Rh3AG213900 Rh3AG229700 Rh3AG229800 Rh3BG247500 Rh3CG241400 Rh3CG259700 Rh3DG240600 Rh3DG240700 Rh3DG240800 Rh3DG255900
rosa_wichuraiana	Rw3G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	440
AciI	CCGC	3 cut(s)	45, 488, 533
AclWI	GGATC	1 cut(s)	605
AcoI	YGGCCR	1 cut(s)	489
AcsI	RAATTY	1 cut(s)	305
AfaI	GTAC	4 cut(s)	343, 582, 628, 656
AgsI	TTSAA	2 cut(s)	167, 254
AjnI	CCWGG	2 cut(s)	277, 594
AleI	CACNNNNGTG	1 cut(s)	482
AluBI	AGCT	4 cut(s)	123, 257, 272, 389
AluI	AGCT	4 cut(s)	123, 257, 272, 389
AlwI	GGATC	1 cut(s)	605
AoxI	GGCC	4 cut(s)	145, 153, 275, 489
ApaI	GGGCCC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	305
ArsI	GACNNNNNNTTYG	2 cut(s)	495, 527
AspS9I	GGNCC	4 cut(s)	135, 153, 154, 434
AsuC2I	CCSGG	1 cut(s)	438
AvaII	GGWCC	2 cut(s)	135, 434
BaeGI	GKGCMC	2 cut(s)	157, 445
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	220, 418, 500
BciT130I	CCWGG	2 cut(s)	279, 596
BcnI	CCSGG	1 cut(s)	438
BfaI	CTAG	1 cut(s)	658
BisI	GCNGC	2 cut(s)	258, 489
BlsI	GCNGC	2 cut(s)	259, 490
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	3 cut(s)	279, 438, 596
Bme18I	GGWCC	2 cut(s)	135, 434
BmgT120I	GGNCC	4 cut(s)	135, 153, 154, 434
BmiI	GGNNCC	3 cut(s)	155, 435, 442
BmrFI	CCNGG	3 cut(s)	279, 438, 596
BmsI	GCATC	1 cut(s)	460
BpuMI	CCSGG	1 cut(s)	438
BsaBI	GATNNNNATC	1 cut(s)	211
BsaJI	CCNNGG	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	197, 588
Bse8I	GATNNNNATC	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	279, 596
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	96, 541
BseJI	GATNNNNATC	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	197, 588
BseSI	GKGCMC	2 cut(s)	157, 445
BseXI	GCAGC	1 cut(s)	244
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	4 cut(s)	147, 155, 277, 491
BshNI	GGYRCC	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	437
BsnI	GGCC	4 cut(s)	147, 155, 277, 491
Bsp120I	GGGCCC	1 cut(s)	153
Bsp1286I	GDGCHC	2 cut(s)	157, 445
Bsp143I	GATC	2 cut(s)	525, 610
BspACI	CCGC	3 cut(s)	45, 488, 533
BspANI	GGCC	4 cut(s)	147, 155, 277, 491
BspLI	GGNNCC	3 cut(s)	155, 435, 442
BspPI	GGATC	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	197, 588
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	2 cut(s)	525, 610
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	279, 596
Bst4CI	ACNGT	4 cut(s)	52, 233, 481, 622
BstC8I	GCNNGC	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	96, 541
BstKTI	GATC	2 cut(s)	528, 613
BstMBI	GATC	2 cut(s)	525, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	2 cut(s)	279, 596
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	3 cut(s)	277, 436, 594
BstSLI	GKGCMC	2 cut(s)	157, 445
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	4 cut(s)	147, 155, 277, 491
BtsCI	GGATG	2 cut(s)	96, 541
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	4 cut(s)	135, 153, 154, 434
Csp6I	GTAC	4 cut(s)	342, 581, 627, 655
CviAII	CATG	5 cut(s)	115, 143, 332, 339, 551
CviJI	RGCY	9 cut(s)	123, 147, 155, 218, 257, 272, 277, 389, 491
CviKI_1	RGCY	9 cut(s)	123, 147, 155, 218, 257, 272, 277, 389, 491
CviQI	GTAC	4 cut(s)	342, 581, 627, 655
DpnI	GATC	2 cut(s)	527, 612
DpnII	GATC	2 cut(s)	525, 610
EaeI	YGGCCR	1 cut(s)	489
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	135, 434
EcoRII	CCWGG	2 cut(s)	277, 594
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	5 cut(s)	118, 146, 335, 342, 554
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	5 cut(s)	114, 142, 331, 338, 550
FauI	CCCGC	1 cut(s)	52
Fnu4HI	GCNGC	2 cut(s)	258, 489
FokI	GGATG	2 cut(s)	83, 548
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	258, 489
FspBI	CTAG	1 cut(s)	658
GluI	GCNGC	2 cut(s)	258, 489
HaeIII	GGCC	4 cut(s)	147, 155, 277, 491
HapII	CCGG	1 cut(s)	437
Hin1II	CATG	5 cut(s)	118, 146, 335, 342, 554
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	1 cut(s)	539
HpaII	CCGG	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4III	ACNGT	4 cut(s)	52, 233, 481, 622
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	260, 550
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	118, 146, 335, 342, 554
Kzo9I	GATC	2 cut(s)	525, 610
LmnI	GCTCC	2 cut(s)	386, 400
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	658
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	527, 612
MboI	GATC	2 cut(s)	525, 610
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	2 cut(s)	157, 445
MluCI	AATT	2 cut(s)	305, 446
MlyI	GAGTC	1 cut(s)	533
MnlI	CCTC	1 cut(s)	231
MseI	TTAA	3 cut(s)	201, 228, 303
MslI	CAYNNNNRTG	1 cut(s)	482
MspI	CCGG	1 cut(s)	437
MspR9I	CCNGG	3 cut(s)	279, 438, 596
MvaI	CCWGG	2 cut(s)	279, 596
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	525, 610
NlaIII	CATG	5 cut(s)	118, 146, 335, 342, 554
NlaIV	GGNNCC	3 cut(s)	155, 435, 442
NspI	RCATGY	1 cut(s)	554
OliI	CACNNNNGTG	1 cut(s)	482
PkrI	GCNGC	2 cut(s)	259, 490
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	277, 594
PspGI	CCWGG	2 cut(s)	277, 594
PspN4I	GGNNCC	3 cut(s)	155, 435, 442
PspOMI	GGGCCC	1 cut(s)	153
PspPI	GGNCC	4 cut(s)	135, 153, 154, 434
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	4 cut(s)	343, 582, 628, 656
RsaNI	GTAC	4 cut(s)	342, 581, 627, 655
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	3 cut(s)	201, 228, 303
SatI	GCNGC	2 cut(s)	258, 489
Sau3AI	GATC	2 cut(s)	525, 610
Sau96I	GGNCC	4 cut(s)	135, 153, 154, 434
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	3 cut(s)	279, 438, 596
SduI	GDGCHC	2 cut(s)	157, 445
SfaNI	GCATC	1 cut(s)	460
SinI	GGWCC	2 cut(s)	135, 434
SmiMI	CAYNNNNRTG	1 cut(s)	482
Sse9I	AATT	2 cut(s)	305, 446
SsiI	CCGC	3 cut(s)	45, 488, 533
SspI	AATATT	2 cut(s)	238, 522
SspMI	CTAG	1 cut(s)	658
StyD4I	CCNGG	3 cut(s)	277, 436, 594
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	4 cut(s)	52, 233, 481, 622
TaiI	ACGT	1 cut(s)	252
TasI	AATT	2 cut(s)	305, 446
TatI	WGTACW	1 cut(s)	654
TauI	GCSGC	1 cut(s)	491
Tru1I	TTAA	3 cut(s)	201, 228, 303
Tru9I	TTAA	3 cut(s)	201, 228, 303
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	16, 131, 327
VpaK11BI	GGWCC	2 cut(s)	135, 434
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	1 cut(s)	658
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.