Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009701

Physical Location & Seq

Genomic Coordinates Forward (+)

16015250 .. 16018149

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22334.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGAACGTAACCATTTTCATGGCGGTGTTTTTTCTGGTGGTTTTTCAAGTAGCGTCGCTGGTTAACGACCCAAAAAAAAAAGTAGTGTCGCCGGTTGTGGCGCTTTCTGATAACTTTACAAATCTTACTGAACAGATCAATGATGACGATGACGACGATGACCCAGGATTTGGTGACCCAGGATATGATGAGGTGCACCTATTCGTACAAGTGACTGGGCGGAAGGTAGCGCGCTGGACCATCCACGGCCTTTGGGACGAAAAGGCTGTGAGTAACGGGCCCTTTGCCGATGTGGTTCGTTATGTGGGATATGTCGACTGTGTCGAGAATAAAATTTCATATAATTACGACGAGCTCGATCCGATTCTAGTGCAAGACCTCCATCGAATATGGCCCACCAGAAGAGATGGAGCCTACCAAACAGACAGGGGCTTTTGGGCCCACGAAATTACTCGACATGGATCGTGTATGGTGGATGTATTGGGACGGCGGGGGGTGGCGTATCTAAGAACGGCAAAAAAATTGTGGTACAAGTGCCAGATAGACAAATTCATGGGTTCTGGAAAAAAGTATTGGCCAGGCCGTAGATTCAATGTCGCTGATTTACTGGCGGACATCGGTACGGGCAGACTAATATTGGAGTGCGAAGGAAACTTTCTGGTTAGAATTAAATTCTGCCACAGCAAAGGCTTGGTTCTTCAGGAATGCTTGCCTACCTACCCCGATCCAGAAAGAGATTGTCCCGCAAGAGTTTCTTTTAATTCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

258

Amino Acids

29.31

Weight (kDa)

5.72

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	75 - 237	3e-12	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22290 FvH4_6g22334 FvH4_6g22981
rosa_chinensis	RchiOBHm_Chr3g0476241 RchiOBHm_Chr3g0477761 RchiOBHm_Chr3g0477801 RchiOBHm_Chr3g0479851
rosa_laevigata	RLG00000023532
rosa_multiflora	Rmu_sc0017867.1_g000005
rosa_samantha	Rh3AG213600 Rh3AG213700 Rh3AG213900 Rh3AG229700 Rh3AG229800 Rh3BG247500 Rh3CG241400 Rh3CG259700 Rh3DG240600 Rh3DG240700 Rh3DG240800 Rh3DG255900
rosa_wichuraiana	Rw3G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	1 cut(s)	235
AciI	CCGC	5 cut(s)	26, 223, 493, 614, 747
AclWI	GGATC	3 cut(s)	356, 472, 722
AcoI	YGGCCR	1 cut(s)	578
AcsI	RAATTY	3 cut(s)	336, 551, 674
AcuI	CTGAAG	1 cut(s)	686
AfaI	GTAC	3 cut(s)	210, 533, 625
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	50, 595
AjnI	CCWGG	3 cut(s)	166, 181, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	559, 591
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	2 cut(s)	201, 360
Alw44I	GTGCAC	1 cut(s)	197
AlwI	GGATC	3 cut(s)	356, 472, 722
AoxI	GGCC	6 cut(s)	250, 281, 395, 441, 578, 583
ApaI	GGGCCC	2 cut(s)	285, 445
ApaLI	GTGCAC	1 cut(s)	197
ApoI	RAATTY	3 cut(s)	336, 551, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspLEI	GCGC	3 cut(s)	106, 235, 237
AspS9I	GGNCC	6 cut(s)	240, 281, 282, 396, 441, 442
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	3 cut(s)	201, 285, 445
BalI	TGGCCA	1 cut(s)	580
BanII	GRGCYC	3 cut(s)	285, 360, 445
Bbv12I	GWGCWC	2 cut(s)	201, 360
BccI	CCATC	3 cut(s)	251, 393, 404
BceAI	ACGGC	4 cut(s)	265, 506, 531, 570
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BciT130I	CCWGG	3 cut(s)	168, 183, 582
BfaI	CTAG	1 cut(s)	371
BfoI	RGCGCY	1 cut(s)	107
Bme1390I	CCNGG	3 cut(s)	168, 183, 582
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	6 cut(s)	240, 281, 282, 396, 441, 442
BmiI	GGNNCC	3 cut(s)	283, 415, 443
BmrFI	CCNGG	3 cut(s)	168, 183, 582
BmrI	ACTGGG	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	166, 181, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	223, 615
BseBI	CCWGG	3 cut(s)	168, 183, 582
BseDI	CCNNGG	3 cut(s)	166, 181, 247
BseGI	GGATG	2 cut(s)	243, 484
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseNI	ACTGG	2 cut(s)	223, 615
BsePI	GCGCGC	1 cut(s)	233
BseSI	GKGCMC	3 cut(s)	201, 285, 445
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	6 cut(s)	252, 283, 397, 443, 580, 585
BsiHKAI	GWGCWC	2 cut(s)	201, 360
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	3 cut(s)	272, 501, 729
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	3 cut(s)	272, 501, 729
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	6 cut(s)	252, 283, 397, 443, 580, 585
Bsp120I	GGGCCC	2 cut(s)	281, 441
Bsp1286I	GDGCHC	4 cut(s)	201, 285, 360, 445
Bsp143I	GATC	4 cut(s)	138, 361, 464, 727
BspACI	CCGC	5 cut(s)	26, 223, 493, 614, 747
BspANI	GGCC	6 cut(s)	252, 283, 397, 443, 580, 585
BspFNI	CGCG	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	283, 415, 443
BspPI	GGATC	3 cut(s)	356, 472, 722
BsrFI	RCCGGY	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	223, 615
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	3 cut(s)	166, 181, 247
BssHII	GCGCGC	1 cut(s)	233
BssMI	GATC	4 cut(s)	138, 361, 464, 727
Bst2UI	CCWGG	3 cut(s)	168, 183, 582
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	2 cut(s)	235, 713
BstDEI	CTNAG	1 cut(s)	509
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	176
BstF5I	GGATG	2 cut(s)	243, 484
BstFNI	CGCG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	3 cut(s)	106, 235, 237
BstKTI	GATC	4 cut(s)	141, 364, 467, 730
BstMBI	GATC	4 cut(s)	138, 361, 464, 727
BstNI	CCWGG	3 cut(s)	168, 183, 582
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	3 cut(s)	166, 181, 580
BstSLI	GKGCMC	3 cut(s)	201, 285, 445
BstUI	CGCG	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	22
BsuRI	GGCC	6 cut(s)	252, 283, 397, 443, 580, 585
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	243, 484
Cac8I	GCNNGC	2 cut(s)	235, 713
CfoI	GCGC	3 cut(s)	106, 235, 237
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	6 cut(s)	240, 281, 282, 396, 441, 442
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	209, 532, 624
CspCI	CAANNNNNGTGG	2 cut(s)	236, 271
CviAII	CATG	3 cut(s)	22, 461, 556
CviQI	GTAC	3 cut(s)	209, 532, 624
DdeI	CTNAG	1 cut(s)	509
DpnI	GATC	4 cut(s)	140, 363, 466, 729
DpnII	GATC	4 cut(s)	138, 361, 464, 727
EaeI	YGGCCR	1 cut(s)	578
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
EciI	GGCGGA	2 cut(s)	238, 629
Ecl136II	GAGCTC	1 cut(s)	358
Eco24I	GRGCYC	3 cut(s)	285, 360, 445
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	686
Eco91I	GGTNACC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	358
EcoO109I	RGGNCCY	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	166, 181, 580
EcoT38I	GRGCYC	3 cut(s)	285, 360, 445
FaeI	CATG	3 cut(s)	25, 464, 559
FalI	AAGNNNNNCTT	2 cut(s)	742, 774
FaqI	GGGAC	3 cut(s)	272, 501, 729
FatI	CATG	3 cut(s)	21, 460, 555
FauI	CCCGC	2 cut(s)	486, 754
FblI	GTMKAC	1 cut(s)	318
FokI	GGATG	2 cut(s)	230, 491
FriOI	GRGCYC	3 cut(s)	285, 360, 445
FspBI	CTAG	1 cut(s)	371
GlaI	GCGC	3 cut(s)	105, 234, 236
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	6 cut(s)	252, 283, 397, 443, 580, 585
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	3 cut(s)	106, 235, 237
Hin1II	CATG	3 cut(s)	25, 464, 559
Hin6I	GCGC	3 cut(s)	104, 233, 235
HinP1I	GCGC	3 cut(s)	104, 233, 235
HincII	GTYRAC	2 cut(s)	67, 319
HindII	GTYRAC	2 cut(s)	67, 319
HinfI	GANTC	2 cut(s)	367, 591
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	67, 199, 319
Hpy188I	TCNGA	3 cut(s)	112, 366, 769
Hpy188III	TCNNGA	4 cut(s)	328, 564, 704, 731
Hpy8I	GTNNAC	3 cut(s)	67, 199, 319
Hpy99I	CGWCG	3 cut(s)	61, 161, 356
HpyAV	CCTTC	2 cut(s)	220, 644
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	2 cut(s)	199, 376
HpyF3I	CTNAG	1 cut(s)	509
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	25, 464, 559
HspAI	GCGC	3 cut(s)	104, 233, 235
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	138, 361, 464, 727
LmnI	GCTCC	1 cut(s)	413
MaeI	CTAG	1 cut(s)	371
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	4 cut(s)	10, 176, 214, 275
MalI	GATC	4 cut(s)	140, 363, 466, 729
MboI	GATC	4 cut(s)	138, 361, 464, 727
MboII	GAAGA	2 cut(s)	417, 692
MhlI	GDGCHC	4 cut(s)	201, 285, 360, 445
MlsI	TGGCCA	1 cut(s)	580
MluCI	AATT	8 cut(s)	336, 346, 450, 524, 551, 669, 674, 763
MluNI	TGGCCA	1 cut(s)	580
MnlI	CCTC	2 cut(s)	187, 392
Mox20I	TGGCCA	1 cut(s)	580
MscI	TGGCCA	1 cut(s)	580
MseI	TTAA	3 cut(s)	66, 672, 762
MslI	CAYNNNNRTG	2 cut(s)	20, 26
Msp20I	TGGCCA	1 cut(s)	580
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	168, 183, 582
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	3 cut(s)	168, 183, 582
MvnI	CGCG	1 cut(s)	235
NdeII	GATC	4 cut(s)	138, 361, 464, 727
NlaIII	CATG	3 cut(s)	25, 464, 559
NlaIV	GGNNCC	3 cut(s)	283, 415, 443
NmuCI	GTSAC	2 cut(s)	176, 214
PauI	GCGCGC	1 cut(s)	233
PcsI	WCGNNNNNNNCGW	3 cut(s)	156, 324, 357
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	2 cut(s)	367, 591
PflFI	GACNNNGTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	360
Psp6I	CCWGG	3 cut(s)	166, 181, 580
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	3 cut(s)	166, 181, 580
PspN4I	GGNNCC	3 cut(s)	283, 415, 443
PspOMI	GGGCCC	2 cut(s)	281, 441
PspPI	GGNCC	6 cut(s)	240, 281, 282, 396, 441, 442
PsyI	GACNNNGTC	1 cut(s)	323
PteI	GCGCGC	1 cut(s)	233
RsaI	GTAC	3 cut(s)	210, 533, 625
RsaNI	GTAC	3 cut(s)	209, 532, 624
RseI	CAYNNNNRTG	2 cut(s)	20, 26
SacI	GAGCTC	1 cut(s)	360
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	66, 672, 762
Sau3AI	GATC	4 cut(s)	138, 361, 464, 727
Sau96I	GGNCC	6 cut(s)	240, 281, 282, 396, 441, 442
ScrFI	CCNGG	3 cut(s)	168, 183, 582
SduI	GDGCHC	4 cut(s)	201, 285, 360, 445
SetI	ASST	7 cut(s)	12, 198, 204, 231, 360, 384, 722
SinI	GGWCC	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	20, 26
Sse9I	AATT	8 cut(s)	336, 346, 450, 524, 551, 669, 674, 763
SsiI	CCGC	5 cut(s)	26, 223, 493, 614, 747
SspI	AATATT	1 cut(s)	639
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	166, 181, 580
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	5 cut(s)	318, 327, 360, 388, 457
TasI	AATT	8 cut(s)	336, 346, 450, 524, 551, 669, 674, 763
TfiI	GAWTC	2 cut(s)	367, 591
Tru1I	TTAA	3 cut(s)	66, 672, 762
Tru9I	TTAA	3 cut(s)	66, 672, 762
TseFI	GTSAC	2 cut(s)	176, 214
Tsp45I	GTSAC	2 cut(s)	176, 214
TspDTI	ATGAA	3 cut(s)	10, 330, 544
Tth111I	GACNNNGTC	1 cut(s)	323
Van91I	CCANNNNNTGG	1 cut(s)	173
VneI	GTGCAC	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	3 cut(s)	336, 551, 674
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.