FvH4_6g22981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009701
Physical Location & Seq
Reverse (-)
16708998 .. 16709526
529 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22981.t1

Sequence Viewer

Length: 285 bp
ATGGTGAGGGTAAATGCATTTCGGGCACCGATGAGAAGCCAGGCGGTAAATGCCACAATTTTTGCACTCAAGGTGCATAAGCTTGTAAGGAGATCTTTATGGATCATGGATGGCGAAGCAGATAGCGATTTTCATCGCGATGGTTTTTCTGATCATCGACTTGAAAGTAACTTTTCAAGTCTTTCCAGCGATGAACATATCAACGCCTACGGCGATGACCCAGGATATGATGTGGTGCAACTAGTCTTACAAGTGACTAGTCTATCGAGGTTTTACTGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.7

Weight (kDa)

6.02

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 25
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 110
AgsI TTSAA 2 cut(s) 164, 177
AhlI ACTAGT 2 cut(s) 241, 257
AjnI CCWGG 2 cut(s) 39, 220
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AlwI GGATC 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 25
BccI CCATC 2 cut(s) 104, 134
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 2 cut(s) 41, 222
BclI TGATCA 1 cut(s) 151
BcuI ACTAGT 2 cut(s) 241, 257
BfaI CTAG 2 cut(s) 242, 258
BfmI CTRYAG 1 cut(s) 277
BglII AGATCT 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 41, 222
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 41, 222
BpuEI CTTGAG 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 2 cut(s) 41, 222
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 132
BseSI GKGCMC 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 138
BshNI GGYRCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 3 cut(s) 92, 102, 151
Bsp68I TCGCGA 1 cut(s) 138
BspACI CCGC 1 cut(s) 44
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 3 cut(s) 92, 102, 151
Bst2UI CCWGG 2 cut(s) 41, 222
Bst4CI ACNGT 1 cut(s) 278
BstF5I GGATG 1 cut(s) 115
BstFNI CGCG 1 cut(s) 138
BstKTI GATC 3 cut(s) 95, 105, 154
BstMBI GATC 3 cut(s) 92, 102, 151
BstMWI GCNNNNNNNGC 2 cut(s) 23, 50
BstNI CCWGG 2 cut(s) 41, 222
BstSCI CCNGG 2 cut(s) 39, 220
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 1 cut(s) 28
BstUI CGCG 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
BtgZI GCGATG 4 cut(s) 119, 153, 204, 228
BtsCI GGATG 1 cut(s) 115
BtuMI TCGCGA 1 cut(s) 138
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 1 cut(s) 106
CviJI RGCY 2 cut(s) 39, 82
CviKI_1 RGCY 2 cut(s) 39, 82
DpnI GATC 3 cut(s) 94, 104, 153
DpnII GATC 3 cut(s) 92, 102, 151
EcoRII CCWGG 2 cut(s) 39, 220
EcoT22I ATGCAT 1 cut(s) 19
FaeI CATG 1 cut(s) 109
FaiI YATR 5 cut(s) 78, 100, 107, 198, 228
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 151
FokI GGATG 1 cut(s) 122
FspBI CTAG 2 cut(s) 242, 258
Hin1II CATG 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 80
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 4 cut(s) 17, 65, 76, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 50
Hsp92II CATG 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 3 cut(s) 92, 102, 151
LpnPI CCDG 5 cut(s) 26, 53, 199, 207, 234
MaeI CTAG 2 cut(s) 242, 258
MaeIII GTNAC 2 cut(s) 167, 253
MalI GATC 3 cut(s) 94, 104, 153
MboI GATC 3 cut(s) 92, 102, 151
MflI RGATCY 1 cut(s) 92
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 1 cut(s) 57
MnlI CCTC 1 cut(s) 261
Mph1103I ATGCAT 1 cut(s) 19
MseI TTAA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 41, 222
MvaI CCWGG 2 cut(s) 41, 222
MvnI CGCG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 23, 50
NdeII GATC 3 cut(s) 92, 102, 151
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 253
NruI TCGCGA 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 39, 220
PspGI CCWGG 2 cut(s) 39, 220
PspN4I GGNNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 92
RruI TCGCGA 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 283
Sau3AI GATC 3 cut(s) 92, 102, 151
ScrFI CCNGG 2 cut(s) 41, 222
SduI GDGCHC 1 cut(s) 28
SetI ASST 3 cut(s) 75, 84, 272
SfcI CTRYAG 1 cut(s) 277
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SpeI ACTAGT 2 cut(s) 241, 257
Sse9I AATT 1 cut(s) 57
SsiI CCGC 1 cut(s) 44
SspMI CTAG 2 cut(s) 242, 258
StyD4I CCNGG 2 cut(s) 39, 220
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 157, 266
TasI AATT 1 cut(s) 57
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 122, 207
XspI CTAG 2 cut(s) 242, 258
Zsp2I ATGCAT 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.