Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009701

Physical Location & Seq

Genomic Coordinates Reverse (-)

23594444 .. 23595372

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG247500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAACTCATATACTTTCTTGCTTTCATGTTGTGTTTTTTCCCCACTGTGCCAGCAAAACAAACACAAATTTATGACTACACCTTGCTGGTGCTACAAAATCCTACGTTCTTAACCAACGCTAGTCCTTGGACGACAAATGGCATCTGGGCAGTCAACCTTGCAGGGGAATCTCCTCCTGAGTATAAGTATGTGGCACTTGATAACTGTCCATCAGCCCCTCCATTTGACTATCAGCTTAGTGACGCCGTTATAAGTGTACTCTCTGAAGCTTGGCCAAATCCCTATCCGAATATGACTACAGCCATGGAAATTTGGAGACATGAATATGAGATACACGGTTCATGTACCATAGATATATTGCCAACTTCCACTAGTTATTTACTGCAAGCACTTTACTTGTGGGAGAAACTAAAGTTTCACGATTTGATGGGTGAGAATGGCACTTATAAGCCAAATATTCAATATCAAACCGAGGACGTGCTGAACGGCATCAAATGTGTCTATTATGTCCAACCAATATTGATATGTTCTGTCAGTGAACTAGTGGATGTTAGGTTTTGTTATACAGGACATTGGGTACTGATAAATTGCATGGGCACCCAATCAACATCAACTTGTACGGGTCTTATTCAATATAGTCGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004540 GO:0005575 GO:0005576 GO:0005615 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044421 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

216

Amino Acids

24.65

Weight (kDa)

4.62

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	35 - 198	3.4e-17	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22290 FvH4_6g22334 FvH4_6g22981
rosa_chinensis	RchiOBHm_Chr3g0476241 RchiOBHm_Chr3g0477761 RchiOBHm_Chr3g0477801 RchiOBHm_Chr3g0479851
rosa_laevigata	RLG00000023532
rosa_multiflora	Rmu_sc0017867.1_g000005
rosa_samantha	Rh3AG213600 Rh3AG213700 Rh3AG213900 Rh3AG229700 Rh3AG229800 Rh3BG247500 Rh3CG241400 Rh3CG259700 Rh3DG240600 Rh3DG240700 Rh3DG240800 Rh3DG255900
rosa_wichuraiana	Rw3G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	254, 450
AccB1I	GGYRCC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	2 cut(s)	69, 312
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	4 cut(s)	261, 349, 582, 622
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	464, 635
AhlI	ACTAGT	2 cut(s)	374, 544
AjiI	CACGTC	1 cut(s)	481
AluBI	AGCT	3 cut(s)	238, 272, 648
AluI	AGCT	3 cut(s)	238, 272, 648
Alw26I	GTCTC	1 cut(s)	313
AoxI	GGCC	1 cut(s)	275
ApoI	RAATTY	2 cut(s)	69, 312
AsuHPI	GGTGA	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	599
BccI	CCATC	2 cut(s)	220, 424
BceAI	ACGGC	2 cut(s)	233, 505
BcoDI	GTCTC	1 cut(s)	313
BcuI	ACTAGT	2 cut(s)	374, 544
BfaI	CTAG	4 cut(s)	123, 375, 545, 649
BfmI	CTRYAG	1 cut(s)	300
BmgBI	CACGTC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	601
BmsI	GCATC	2 cut(s)	153, 501
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	3 cut(s)	128, 306, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseDI	CCNNGG	3 cut(s)	128, 306, 474
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	602
BshFI	GGCC	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	602
Bsp19I	CCATGG	1 cut(s)	306
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	172
BspLI	GGNNCC	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	599
BssECI	CCNNGG	3 cut(s)	128, 306, 474
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	128, 306
Bst4CI	ACNGT	3 cut(s)	49, 209, 341
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	54, 390
BstDEI	CTNAG	2 cut(s)	180, 239
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	306
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	2 cut(s)	45, 544
Cac8I	GCNNGC	2 cut(s)	54, 390
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	4 cut(s)	260, 348, 581, 621
CviAII	CATG	5 cut(s)	28, 307, 323, 345, 595
CviJI	RGCY	7 cut(s)	218, 238, 272, 277, 305, 454, 648
CviKI_1	RGCY	7 cut(s)	218, 238, 272, 277, 305, 454, 648
CviQI	GTAC	4 cut(s)	260, 348, 581, 621
DdeI	CTNAG	2 cut(s)	180, 239
EaeI	YGGCCR	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	128, 306
Eco57I	CTGAAG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	128, 306
ErhI	CCWWGG	2 cut(s)	128, 306
FaeI	CATG	5 cut(s)	31, 310, 326, 348, 598
FatI	CATG	5 cut(s)	27, 306, 322, 344, 594
FokI	GGATG	1 cut(s)	563
FspBI	CTAG	4 cut(s)	123, 375, 545, 649
HaeIII	GGCC	1 cut(s)	277
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	5 cut(s)	31, 310, 326, 348, 598
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	157, 260, 542
Hpy188I	TCNGA	3 cut(s)	268, 291, 645
Hpy188III	TCNNGA	2 cut(s)	179, 422
Hpy8I	GTNNAC	3 cut(s)	157, 260, 542
HpyCH4III	ACNGT	3 cut(s)	49, 209, 341
HpyCH4IV	ACGT	2 cut(s)	107, 480
HpyCH4V	TGCA	3 cut(s)	164, 388, 594
HpyF3I	CTNAG	2 cut(s)	180, 239
HpySE526I	ACGT	2 cut(s)	107, 480
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	31, 310, 326, 348, 598
LmnI	GCTCC	1 cut(s)	645
LpnPI	CCDG	6 cut(s)	66, 74, 133, 150, 192, 555
LweI	GCATC	2 cut(s)	153, 501
MaeI	CTAG	4 cut(s)	123, 375, 545, 649
MaeII	ACGT	2 cut(s)	107, 480
MaeIII	GTNAC	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	602
MlsI	TGGCCA	1 cut(s)	277
MluCI	AATT	3 cut(s)	69, 312, 589
MluNI	TGGCCA	1 cut(s)	277
MmeI	TCCRAC	2 cut(s)	538, 623
MnlI	CCTC	3 cut(s)	186, 231, 469
Mox20I	TGGCCA	1 cut(s)	277
MscI	TGGCCA	1 cut(s)	277
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	306
NlaIII	CATG	5 cut(s)	31, 310, 326, 348, 598
NlaIV	GGNNCC	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	170
PsiI	TTATAA	2 cut(s)	254, 450
PspN4I	GGNNCC	1 cut(s)	601
RsaI	GTAC	4 cut(s)	261, 349, 582, 622
RsaNI	GTAC	4 cut(s)	260, 348, 581, 621
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	602
SetI	ASST	8 cut(s)	86, 110, 162, 240, 274, 483, 560, 650
SfaNI	GCATC	2 cut(s)	153, 501
SfcI	CTRYAG	1 cut(s)	300
SmiMI	CAYNNNNRTG	1 cut(s)	327
SpeI	ACTAGT	2 cut(s)	374, 544
Sse9I	AATT	3 cut(s)	69, 312, 589
SspI	AATATT	2 cut(s)	460, 522
SspMI	CTAG	4 cut(s)	123, 375, 545, 649
StyI	CCWWGG	2 cut(s)	128, 306
TaaI	ACNGT	3 cut(s)	49, 209, 341
TaiI	ACGT	2 cut(s)	110, 483
TasI	AATT	3 cut(s)	69, 312, 589
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	52, 544
TseFI	GTSAC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	3 cut(s)	16, 333, 339
TspRI	CASTG	2 cut(s)	52, 544
XapI	RAATTY	2 cut(s)	69, 312
XspI	CTAG	4 cut(s)	123, 375, 545, 649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.