Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009701

Physical Location & Seq

Genomic Coordinates Forward (+)

25305119 .. 25307807

Gene Structure 2689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG255900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAACTCATTTACTTTCTTGTTTTTATGTTGTGTTTTTTCCCCACTCTACCAGCACAACAAAACCAACAAATTTACGATTATCTCTTTATGGTCCTACAGAATCCTTCGCCCTTAACTGGCAAGGCTCCTTGGAGCATACATGGTATTTGGGCAGAAAAACTTGAACCACTTGTAGGGCCATCTCCACAAAGGTATACGTATGTGCCGGTTCAATCGTGTCAATCATTTCCTCCATTTGACCCGAAGCTTAGTCAAAACATTACAAGTGTACTCGCTACAGCTTGGCCGAGTCTTTCGACTGACTGGCCAAACATTCAATTTTGGGAACATGAATATAACAAACACGGTTCATGTATCGTAGATTTATTACCAACTTCTACGGATTACATAATGAAAGCACTTTACCTGTGGGAGCAACTCAAGTTTGACAAGGTGATGGGTGAGGGTAACCAATTTGAGCCAAATACGCTATACAAAACCGAGGAGATTCTTAAGGGCATCAAAGGTTCACATAATGTTCGACCAGAATTGACCTGTGTCGGTAATAAACTAAAAGATGTTAGGTTTTGTCATACAAGAAATTGGGTATTGGTAGATTGCGAGGGCACCCAAACATCTTGTACAGGTGAAATTCAATATGTTAGGCAAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

218

Amino Acids

25.19

Weight (kDa)

5.72

Isoelectric Point (pI)

45.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	40 - 201	3.6e-24	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0009701)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22290 FvH4_6g22334 FvH4_6g22981
rosa_chinensis	RchiOBHm_Chr3g0476241 RchiOBHm_Chr3g0477761 RchiOBHm_Chr3g0477801 RchiOBHm_Chr3g0479851
rosa_laevigata	RLG00000023532
rosa_multiflora	Rmu_sc0017867.1_g000005
rosa_samantha	Rh3AG213600 Rh3AG213700 Rh3AG213900 Rh3AG229700 Rh3AG229800 Rh3BG247500 Rh3CG241400 Rh3CG259700 Rh3DG240600 Rh3DG240700 Rh3DG240800 Rh3DG255900
rosa_wichuraiana	Rw3G020680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	197
AcoI	YGGCCR	2 cut(s)	287, 308
AcsI	RAATTY	2 cut(s)	72, 633
AfaI	GTAC	2 cut(s)	273, 625
AfiI	CCNNNNNNNGG	2 cut(s)	119, 176
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	4 cut(s)	167, 215, 320, 638
AluBI	AGCT	2 cut(s)	250, 284
AluI	AGCT	2 cut(s)	250, 284
AoxI	GGCC	3 cut(s)	179, 287, 308
ApoI	RAATTY	2 cut(s)	72, 633
AspS9I	GGNCC	2 cut(s)	94, 179
AsuHPI	GGTGA	3 cut(s)	448, 455, 641
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	611
BalI	TGGCCA	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	608
BccI	CCATC	2 cut(s)	190, 433
BfmI	CTRYAG	2 cut(s)	98, 279
BfrI	CTTAAG	1 cut(s)	494
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	94, 179
BmiI	GGNNCC	2 cut(s)	129, 610
BmsI	GCATC	1 cut(s)	510
BoxI	GACNNNNGTC	1 cut(s)	539
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	131, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 176
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	124, 311
BseDI	CCNNGG	2 cut(s)	131, 483
BseLI	CCNNNNNNNGG	2 cut(s)	119, 176
BseNI	ACTGG	2 cut(s)	124, 311
BseRI	GAGGAG	1 cut(s)	500
BseSI	GKGCMC	1 cut(s)	611
BshFI	GGCC	3 cut(s)	181, 289, 310
BshNI	GGYRCC	1 cut(s)	608
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	119, 176
BsnI	GGCC	3 cut(s)	181, 289, 310
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp1407I	TGTACA	1 cut(s)	623
BspANI	GGCC	3 cut(s)	181, 289, 310
BspLI	GGNNCC	2 cut(s)	129, 610
BspT107I	GGYRCC	1 cut(s)	608
BspTI	CTTAAG	1 cut(s)	494
BsrFI	RCCGGY	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	2 cut(s)	124, 311
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	131, 483
BssNAI	GTATAC	1 cut(s)	198
BssT1I	CCWWGG	1 cut(s)	131
Bst1107I	GTATAC	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	494
BstAUI	TGTACA	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	251
BstEII	GGTNACC	1 cut(s)	449
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstPAI	GACNNNNGTC	1 cut(s)	539
BstPI	GGTNACC	1 cut(s)	449
BstSFI	CTRYAG	2 cut(s)	98, 279
BstSLI	GKGCMC	1 cut(s)	611
BstSNI	TACGTA	1 cut(s)	201
BstZ17I	GTATAC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	181, 289, 310
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	94, 179
Csp6I	GTAC	2 cut(s)	272, 624
CviAII	CATG	3 cut(s)	143, 332, 354
CviJI	RGCY	7 cut(s)	128, 181, 250, 284, 289, 310, 463
CviKI_1	RGCY	7 cut(s)	128, 181, 250, 284, 289, 310, 463
CviQI	GTAC	2 cut(s)	272, 624
DdeI	CTNAG	1 cut(s)	251
EaeI	YGGCCR	2 cut(s)	287, 308
Eco105I	TACGTA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	94
Eco91I	GGTNACC	1 cut(s)	449
EcoO65I	GGTNACC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	3 cut(s)	146, 335, 357
FatI	CATG	3 cut(s)	142, 331, 353
FblI	GTMKAC	1 cut(s)	197
HaeIII	GGCC	3 cut(s)	181, 289, 310
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	3 cut(s)	146, 335, 357
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	103, 292, 490
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	3 cut(s)	448, 455, 641
Hpy166II	GTNNAC	3 cut(s)	198, 272, 512
Hpy8I	GTNNAC	3 cut(s)	198, 272, 512
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4IV	ACGT	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	3 cut(s)	146, 335, 357
LmnI	GCTCC	3 cut(s)	133, 135, 415
LpnPI	CCDG	8 cut(s)	66, 105, 222, 292, 422, 540, 550, 612
LweI	GCATC	1 cut(s)	510
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	449
MhlI	GDGCHC	1 cut(s)	611
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	6 cut(s)	72, 320, 455, 530, 583, 633
MluNI	TGGCCA	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	4 cut(s)	243, 439, 478, 598
Mox20I	TGGCCA	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	2 cut(s)	116, 495
Msp20I	TGGCCA	1 cut(s)	310
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	469
NlaIII	CATG	3 cut(s)	146, 335, 357
NlaIV	GGNNCC	2 cut(s)	129, 610
NmeAIII	GCCGAG	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	103, 490
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Ppu21I	YACGTR	1 cut(s)	201
PshAI	GACNNNNGTC	1 cut(s)	539
PspEI	GGTNACC	1 cut(s)	449
PspN4I	GGNNCC	2 cut(s)	129, 610
PspPI	GGNCC	2 cut(s)	94, 179
RsaI	GTAC	2 cut(s)	273, 625
RsaNI	GTAC	2 cut(s)	272, 624
SaqAI	TTAA	2 cut(s)	116, 495
Sau96I	GGNCC	2 cut(s)	94, 179
SchI	GAGTC	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	611
SfaNI	GCATC	1 cut(s)	510
SfcI	CTRYAG	2 cut(s)	98, 279
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	2 cut(s)	422, 494
SmoI	CTYRAG	2 cut(s)	422, 494
SnaBI	TACGTA	1 cut(s)	201
Sse9I	AATT	6 cut(s)	72, 320, 455, 530, 583, 633
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	350
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	299, 523
TasI	AATT	6 cut(s)	72, 320, 455, 530, 583, 633
TatI	WGTACW	2 cut(s)	271, 623
TfiI	GAWTC	2 cut(s)	103, 490
Tru1I	TTAA	2 cut(s)	116, 495
Tru9I	TTAA	2 cut(s)	116, 495
TspDTI	ATGAA	3 cut(s)	342, 348, 410
TspGWI	ACGGA	1 cut(s)	398
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	94
XapI	RAATTY	2 cut(s)	72, 633
XmiI	GTMKAC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.