Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Reverse (-)

18490240 .. 18493599

Gene Structure 3360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g24380.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATTCTTTGGGGGACCCTGATATCAATGACGACGAAGAAGAACAAGCTCACTATGCTTCTGGGTCTGCATCCAAATTACAACCCAGGGCAGTTGTATCCAGGGCTCGCTGGAATGACGAGATGGGCATGGCTCAAGTCGTAGTTCAGAAGGGCACGTTCTCCAAGTCTACTGGAATTGTTCGCAGTGGCAAGCTCTATTACTCCATTCATGAAGTTCTGTTTTTGGTTGAAATAGGGGCTTTAGTTCTGTTGGATGAGACTGATACCGTCCTTTCCTTGGAAGATGTGTATGTGAAGATGTCAAGTGGAAAGTATAGATGCTGTTGGGATGAATTTCGGGCTTATAGGCAACTCAAATCTCTTGGTTACATTGTTGGGCGCCATGGGATTCCCTGGTCTGTGAAGAAGGCTAAGAGTGATTGCGAAATTATTGCTTCCCAAGGTTGTCCTGAAATTGATGAGGTGGGGAAGTTGGAATCTGAAGAGATCGGGTCTGTCGTTGGGTTGTTCAAAGAGTTGCAGATTAATGAAGCAAGGCCGGTTTTTAATGTGTATCACCCGAACAGCAAGTTCAGGAAGTCTTGTCCTGGTGATCCAAGCTTTGTGCTCTGTTTTACTAGGGGATATCCACCATCCAGAGCAGAGCTTGATGCTCTTGAGGAACAATGTGGGAGCATTCCTTTGAAGTTCTGTAATGTGGAGCAGGGACGGGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

241

Amino Acids

26.74

Weight (kDa)

5.16

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	233, 514, 688
AjnI	CCWGG	4 cut(s)	86, 101, 395, 589
AluBI	AGCT	4 cut(s)	50, 196, 603, 649
AluI	AGCT	4 cut(s)	50, 196, 603, 649
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	1 cut(s)	539
ApoI	RAATTY	1 cut(s)	335
AseI	ATTAAT	1 cut(s)	528
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	551, 605
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	612
BccI	CCATC	2 cut(s)	118, 643
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	4 cut(s)	88, 103, 397, 591
BciVI	GTATCC	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	254
BfaI	CTAG	1 cut(s)	621
BfoI	RGCGCY	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	109
Bme1390I	CCNGG	4 cut(s)	88, 103, 397, 591
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	3 cut(s)	17, 18, 383
BmrFI	CCNGG	4 cut(s)	88, 103, 397, 591
BmsI	GCATC	4 cut(s)	80, 311, 643, 706
BpuEI	CTTGAG	2 cut(s)	120, 680
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	7 cut(s)	86, 87, 102, 279, 385, 395, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	541
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	4 cut(s)	88, 103, 397, 591
BseDI	CCNNGG	7 cut(s)	86, 87, 102, 279, 385, 395, 442
BseGI	GGATG	5 cut(s)	71, 262, 337, 635, 721
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseNI	ACTGG	1 cut(s)	178
BseSI	GKGCMC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	612
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	1 cut(s)	541
Bsp1286I	GDGCHC	3 cut(s)	109, 158, 612
Bsp143I	GATC	2 cut(s)	489, 595
Bsp19I	CCATGG	1 cut(s)	385
BspANI	GGCC	1 cut(s)	541
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	17, 18, 383
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	541
BssECI	CCNNGG	7 cut(s)	86, 87, 102, 279, 385, 395, 442
BssMI	GATC	2 cut(s)	489, 595
BssNI	GRCGYC	1 cut(s)	382
BssT1I	CCWWGG	3 cut(s)	279, 385, 442
Bst2UI	CCWGG	4 cut(s)	88, 103, 397, 591
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	2 cut(s)	109, 194
BstDEI	CTNAG	1 cut(s)	414
BstDSI	CCRYGG	1 cut(s)	385
BstF5I	GGATG	5 cut(s)	71, 262, 337, 635, 721
BstH2I	RGCGCY	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	2 cut(s)	492, 598
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	489, 595
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	4 cut(s)	88, 103, 397, 591
BstSCI	CCNGG	4 cut(s)	86, 101, 395, 589
BstSLI	GKGCMC	1 cut(s)	158
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	385
BtsCI	GGATG	5 cut(s)	71, 262, 337, 635, 721
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	109, 194
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	16
CviAII	CATG	3 cut(s)	130, 212, 386
DdeI	CTNAG	1 cut(s)	414
DinI	GGCGCC	1 cut(s)	383
DpnI	GATC	2 cut(s)	491, 597
DpnII	GATC	2 cut(s)	489, 595
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco130I	CCWWGG	3 cut(s)	279, 385, 442
Eco24I	GRGCYC	1 cut(s)	109
Eco32I	GATATC	2 cut(s)	25, 629
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRII	CCWGG	4 cut(s)	86, 101, 395, 589
EcoRV	GATATC	2 cut(s)	25, 629
EcoT14I	CCWWGG	3 cut(s)	279, 385, 442
EcoT38I	GRGCYC	1 cut(s)	109
EgeI	GGCGCC	1 cut(s)	383
EheI	GGCGCC	1 cut(s)	383
ErhI	CCWWGG	3 cut(s)	279, 385, 442
FaeI	CATG	3 cut(s)	133, 215, 389
FaiI	YATR	7 cut(s)	57, 131, 213, 294, 318, 348, 387
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	3 cut(s)	129, 211, 385
FblI	GTMKAC	1 cut(s)	170
FokI	GGATG	4 cut(s)	58, 269, 344, 622
FriOI	GRGCYC	1 cut(s)	109
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	1 cut(s)	383
HaeII	RGCGCY	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	3 cut(s)	133, 215, 389
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	601
HinfI	GANTC	3 cut(s)	5, 391, 479
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	2 cut(s)	551, 605
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	2 cut(s)	150, 484
Hpy188III	TCNNGA	5 cut(s)	212, 452, 577, 639, 659
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	145, 403
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	71, 523
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	414
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	3 cut(s)	133, 215, 389
HspAI	GCGC	1 cut(s)	382
KasI	GGCGCC	1 cut(s)	381
KflI	GGGWCCC	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	489, 595
LmnI	GCTCC	2 cut(s)	675, 703
LweI	GCATC	4 cut(s)	80, 311, 643, 706
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	368
MalI	GATC	2 cut(s)	491, 597
MboI	GATC	2 cut(s)	489, 595
MboII	GAAGA	6 cut(s)	50, 53, 296, 310, 418, 497
MhlI	GDGCHC	3 cut(s)	109, 158, 612
MluCI	AATT	5 cut(s)	77, 177, 335, 429, 456
Mly113I	GGCGCC	1 cut(s)	382
MmeI	TCCRAC	2 cut(s)	234, 456
MnlI	CCTC	2 cut(s)	457, 655
MseI	TTAA	2 cut(s)	528, 549
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	4 cut(s)	88, 103, 397, 591
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	4 cut(s)	88, 103, 397, 591
MwoI	GCNNNNNNNGC	1 cut(s)	56
NarI	GGCGCC	1 cut(s)	382
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	2 cut(s)	489, 595
NlaIII	CATG	3 cut(s)	133, 215, 389
NlaIV	GGNNCC	3 cut(s)	17, 18, 383
PagI	TCATGA	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	3 cut(s)	5, 391, 479
PluTI	GGCGCC	1 cut(s)	385
PpuMI	RGGWCCY	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	16
Psp6I	CCWGG	4 cut(s)	86, 101, 395, 589
PspGI	CCWGG	4 cut(s)	86, 101, 395, 589
PspN4I	GGNNCC	3 cut(s)	17, 18, 383
PspPI	GGNCC	1 cut(s)	16
PspPPI	RGGWCCY	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	528, 549
Sau3AI	GATC	2 cut(s)	489, 595
Sau96I	GGNCC	1 cut(s)	16
ScrFI	CCNGG	4 cut(s)	88, 103, 397, 591
SduI	GDGCHC	3 cut(s)	109, 158, 612
SetI	ASST	7 cut(s)	52, 161, 198, 448, 468, 605, 651
SfaNI	GCATC	4 cut(s)	80, 311, 643, 706
SfoI	GGCGCC	1 cut(s)	383
SinI	GGWCC	1 cut(s)	16
SmlI	CTYRAG	2 cut(s)	135, 659
SmoI	CTYRAG	2 cut(s)	135, 659
Sse9I	AATT	5 cut(s)	77, 177, 335, 429, 456
SspDI	GGCGCC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	4 cut(s)	86, 101, 395, 589
StyI	CCWWGG	3 cut(s)	279, 385, 442
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	161
TasI	AATT	5 cut(s)	77, 177, 335, 429, 456
TfiI	GAWTC	3 cut(s)	5, 391, 479
Tru1I	TTAA	2 cut(s)	528, 549
Tru9I	TTAA	2 cut(s)	528, 549
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	4 cut(s)	200, 228, 348, 546
TspRI	CASTG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	170
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.