Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Reverse (-)

6433307 .. 6433950

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g06490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTATGTGAAGATTTCAAATGGAAAGCATGGGTGCAGTTGGGAGGAATTTCAAGCTTATAGGCAACTCAAATCTCTTGGTTACATTGTTGGGCGGCATGGTATCCCCTGGTCTATGAAGAGTGCAAAGAGTAATCATGAATCTGTTTCTTGTCACGGTTGCCTTGATAGCAATGAGGAGGTGGACTTGGATTTAGAAGAGTCTAGGTCTGTCATTGGATTGTTCAATGATATGCAACTTAATGAAACAGGGCTGGTATTTGATGTTTATCTCCCAAACAGCAAGTTCAGGAAGTCTTCTCCTGGTGACCCAAGTTTTGTGCTCTGCTTTACCAGAGGTCATCCACCACCCAAAGCAGACCTAGAAGCCCTCGAGAGACGATGCGATAACATTCCCATGAAAGTTTGTCATGTGGAGGAGGGGGGTGTGAGTTTCTTTTCCTTTGACAAAGTGGAACTTCCTATCCTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

158

Amino Acids

17.68

Weight (kDa)

5.66

Isoelectric Point (pI)

45.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	47
AgsI	TTSAA	3 cut(s)	18, 53, 226
AjnI	CCWGG	2 cut(s)	107, 301
AloI	GAACNNNNNNTCC	1 cut(s)	447
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	370
Ama87I	CYCGRG	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AsuHPI	GGTGA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	324
BciT130I	CCWGG	2 cut(s)	109, 303
BciVI	GTATCC	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	204, 362
BfuI	GTATCC	1 cut(s)	113
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	109, 303
BmeT110I	CYCGRG	1 cut(s)	371
BmrFI	CCNGG	2 cut(s)	109, 303
BmsI	GCATC	1 cut(s)	371
BpiI	GAAGAC	1 cut(s)	288
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	109, 303
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	340
BseJI	GATNNNNATC	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	178
BseRI	GAGGAG	2 cut(s)	191, 431
BsgI	GTGCAG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	370
BsmBI	CGTCTC	1 cut(s)	370
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	109, 303
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	113, 192
BstEII	GGTNACC	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	1 cut(s)	168
BstNI	CCWGG	2 cut(s)	109, 303
BstPI	GGTNACC	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	107, 301
BstV2I	GAAGAC	1 cut(s)	288
BsuI	GTATCC	1 cut(s)	113
BtsCI	GGATG	1 cut(s)	340
CciI	TCATGA	1 cut(s)	136
CviAII	CATG	5 cut(s)	29, 98, 137, 397, 410
CviJI	RGCY	3 cut(s)	56, 253, 368
CviKI_1	RGCY	3 cut(s)	56, 253, 368
Eam1104I	CTCTTC	2 cut(s)	113, 192
EarI	CTCTTC	2 cut(s)	113, 192
Eco88I	CYCGRG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	305
EcoO65I	GGTNACC	1 cut(s)	305
EcoRII	CCWGG	2 cut(s)	107, 301
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	5 cut(s)	32, 101, 140, 400, 413
FaiI	YATR	9 cut(s)	6, 30, 60, 99, 116, 138, 233, 398, 411
FalI	AAGNNNNNCTT	2 cut(s)	441, 473
FatI	CATG	5 cut(s)	28, 97, 136, 396, 409
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	2 cut(s)	204, 362
GluI	GCNGC	1 cut(s)	95
Hin1II	CATG	5 cut(s)	32, 101, 140, 400, 413
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	140, 200
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	3 cut(s)	137, 289, 373
Hpy8I	GTNNAC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	36, 125, 235
HpyF10VI	GCNNNNNNNGC	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	32, 101, 140, 400, 413
LpnPI	CCDG	8 cut(s)	94, 121, 234, 239, 274, 288, 315, 346
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	2 cut(s)	204, 362
MaeIII	GTNAC	3 cut(s)	80, 152, 305
MboII	GAAGA	4 cut(s)	22, 130, 209, 288
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	209
MnlI	CCTC	7 cut(s)	37, 169, 172, 329, 380, 409, 412
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	395
MspR9I	CCNGG	2 cut(s)	109, 303
MvaI	CCWGG	2 cut(s)	109, 303
MwoI	GCNNNNNNNGC	1 cut(s)	168
NlaIII	CATG	5 cut(s)	32, 101, 140, 400, 413
NmuCI	GTSAC	2 cut(s)	152, 305
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	96
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	107, 301
PspEI	GGTNACC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	107, 301
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	109, 303
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	6 cut(s)	58, 183, 209, 340, 363, 472
SfaNI	GCATC	1 cut(s)	371
Sfr274I	CTCGAG	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	204, 362
StyD4I	CCNGG	2 cut(s)	107, 301
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	372
TasI	AATT	1 cut(s)	47
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseFI	GTSAC	2 cut(s)	152, 305
Tsp45I	GTSAC	2 cut(s)	152, 305
TspDTI	ATGAA	4 cut(s)	131, 153, 258, 413
XapI	RAATTY	1 cut(s)	47
XhoI	CTCGAG	1 cut(s)	371
XspI	CTAG	2 cut(s)	204, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.