Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Forward (+)

9358091 .. 9361089

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G055000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGGTCGTGGATTGGGGGAATTCTTTAGGGGAGAGTGTTTCTGAGGCCCCTGCACAACATGCCAACAGCACTGATGAAGAAAATCACTATGCTTCTGGGTCTGCATCCAAGTTTCAGCCCAGGAAAATCACATCCAAGGCTCACTGGAATGACCAGATGGGCATGGCTGAGGTGGTAGTTGAAAAGGGTAGATATCGGATATCCACGGGAATTGTGCGCCATAGCAAGCTCTATTACTCTATTGAGGAAGTTTTGTTTTTGGTTGAAATAGGCGACTTGCTTCTCTTGGATGATAGTGGTACACTTTCCTTGGAAGATATATATATGAAGATTTCAGATAGAAAGAATGGGTGTTGTTGGGAGGAATTTCAAGCTTATAGGCAACTCAAGTCTCTTGGTTACATTGTTGGGCGGCATGGTATCCCCTGGTCTATAAAGAGTTTGAAGAGTAATTATGAAACTGTTTCTTCTCAAGGTTGTCCAGAAAGTGATGAGGTGGTGGACTTGGGATCAGAAGAGACTAGGTCTGTCATTGGATTGTTGAATGGGATGCAAATAAATGAAGCAAGGCTGATTTTTGATGTTTATCTCCCAAATAGCAAGTTCAGGAAGTCTTCTCCTGGTGATCCAAGTTTTGTGCTCTGCTTTACTAGGGGTCCTCCACCATCCAAAGCAGACCTTGAAGCCCTCGAGAGACAATGTCAGAACATTCCTTTGAAGGTTTGCCATGAAGAGCAGGGGTGGGTGAGTTTCTTTTCCTTTGACAAGGTGGAACTTCCTGTCCTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

265

Amino Acids

29.65

Weight (kDa)

5.09

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	415
AclWI	GGATC	2 cut(s)	520, 623
AcsI	RAATTY	2 cut(s)	22, 368
AfaI	GTAC	1 cut(s)	304
AgsI	TTSAA	7 cut(s)	185, 269, 374, 448, 547, 686, 721
AjnI	CCWGG	3 cut(s)	122, 428, 622
AloI	GAACNNNNNNTCC	1 cut(s)	768
AluBI	AGCT	2 cut(s)	232, 377
AluI	AGCT	2 cut(s)	232, 377
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	3 cut(s)	399, 515, 691
AlwI	GGATC	2 cut(s)	520, 623
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	2 cut(s)	22, 368
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	49, 659
AsuHPI	GGTGA	2 cut(s)	638, 760
AvaI	CYCGRG	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	659
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	1 cut(s)	645
BbvCI	CCTCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	154, 676
BciT130I	CCWGG	3 cut(s)	124, 430, 624
BciVI	GTATCC	1 cut(s)	434
BcoDI	GTCTC	3 cut(s)	399, 515, 691
BfaI	CTAG	2 cut(s)	525, 654
BfuI	GTATCC	1 cut(s)	434
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	3 cut(s)	124, 430, 624
Bme18I	GGWCC	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	49, 659
BmiI	GGNNCC	2 cut(s)	51, 660
BmrFI	CCNGG	3 cut(s)	124, 430, 624
BmsI	GCATC	2 cut(s)	116, 543
BpiI	GAAGAC	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	2 cut(s)	374, 459
BsaBI	GATNNNNATC	1 cut(s)	588
BsaJI	CCNNGG	5 cut(s)	122, 138, 207, 312, 428
Bse1I	ACTGG	1 cut(s)	152
Bse8I	GATNNNNATC	1 cut(s)	588
BseBI	CCWGG	3 cut(s)	124, 430, 624
BseDI	CCNNGG	5 cut(s)	122, 138, 207, 312, 428
BseGI	GGATG	5 cut(s)	107, 134, 298, 558, 668
BseJI	GATNNNNATC	1 cut(s)	588
BseMII	CTCAG	2 cut(s)	36, 162
BseNI	ACTGG	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	1 cut(s)	692
BsmAI	GTCTC	3 cut(s)	399, 515, 691
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	692
Bsp1286I	GDGCHC	1 cut(s)	645
Bsp143I	GATC	2 cut(s)	512, 628
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	37, 163
BspLI	GGNNCC	2 cut(s)	51, 660
BspPI	GGATC	2 cut(s)	520, 623
BspQI	GCTCTTC	1 cut(s)	729
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	5 cut(s)	122, 138, 207, 312, 428
BssMI	GATC	2 cut(s)	512, 628
BssT1I	CCWWGG	2 cut(s)	138, 312
Bst2UI	CCWGG	3 cut(s)	124, 430, 624
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	3 cut(s)	443, 513, 729
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	45, 171
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	5 cut(s)	107, 134, 298, 558, 668
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	2 cut(s)	515, 631
BstMAI	GTCTC	3 cut(s)	399, 515, 691
BstMBI	GATC	2 cut(s)	512, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNI	CCWGG	3 cut(s)	124, 430, 624
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	122, 428, 622
BstV2I	GAAGAC	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	5 cut(s)	107, 134, 298, 558, 668
BtsIMutI	CAGTG	2 cut(s)	72, 145
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	49, 659
Csp6I	GTAC	1 cut(s)	303
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	4 cut(s)	62, 166, 419, 731
CviJI	RGCY	8 cut(s)	50, 121, 143, 170, 232, 377, 574, 689
CviKI_1	RGCY	8 cut(s)	50, 121, 143, 170, 232, 377, 574, 689
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	45, 171
DpnI	GATC	2 cut(s)	514, 630
DpnII	GATC	2 cut(s)	512, 628
Eam1104I	CTCTTC	3 cut(s)	443, 513, 729
EarI	CTCTTC	3 cut(s)	443, 513, 729
Eco130I	CCWWGG	2 cut(s)	138, 312
Eco32I	GATATC	2 cut(s)	197, 204
Eco47I	GGWCC	1 cut(s)	659
Eco88I	CYCGRG	1 cut(s)	692
EcoO109I	RGGNCCY	2 cut(s)	49, 659
EcoRI	GAATTC	1 cut(s)	22
EcoRII	CCWGG	3 cut(s)	122, 428, 622
EcoRV	GATATC	2 cut(s)	197, 204
EcoT14I	CCWWGG	2 cut(s)	138, 312
ErhI	CCWWGG	2 cut(s)	138, 312
FaeI	CATG	4 cut(s)	65, 169, 422, 734
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FatI	CATG	4 cut(s)	61, 165, 418, 730
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	5 cut(s)	94, 121, 305, 565, 655
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	525, 654
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	65, 169, 422, 734
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	375
HphI	GGTGA	2 cut(s)	638, 760
Hpy166II	GTNNAC	2 cut(s)	305, 505
Hpy188I	TCNGA	5 cut(s)	46, 201, 340, 517, 708
Hpy188III	TCNNGA	3 cut(s)	485, 610, 694
Hpy8I	GTNNAC	2 cut(s)	305, 505
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	3 cut(s)	56, 107, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	45, 171
Hsp92II	CATG	4 cut(s)	65, 169, 422, 734
HspAI	GCGC	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	512, 628
LguI	GCTCTTC	1 cut(s)	729
LweI	GCATC	2 cut(s)	116, 543
MaeI	CTAG	2 cut(s)	525, 654
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	514, 630
MboI	GATC	2 cut(s)	512, 628
MboII	GAAGA	8 cut(s)	92, 329, 343, 460, 462, 530, 609, 746
MhlI	GDGCHC	1 cut(s)	645
MluCI	AATT	4 cut(s)	22, 213, 368, 454
MnlI	CCTC	7 cut(s)	40, 166, 241, 358, 490, 672, 701
MslI	CAYNNNNRTG	1 cut(s)	150
MspR9I	CCNGG	3 cut(s)	124, 430, 624
MvaI	CCWGG	3 cut(s)	124, 430, 624
MwoI	GCNNNNNNNGC	1 cut(s)	62
NdeII	GATC	2 cut(s)	512, 628
NlaIII	CATG	4 cut(s)	65, 169, 422, 734
NlaIV	GGNNCC	2 cut(s)	51, 660
NspI	RCATGY	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	692
PciSI	GCTCTTC	1 cut(s)	729
PflFI	GACNNNGTC	2 cut(s)	526, 702
PkrI	GCNGC	1 cut(s)	417
PpuMI	RGGWCCY	1 cut(s)	659
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	3 cut(s)	122, 428, 622
PspGI	CCWGG	3 cut(s)	122, 428, 622
PspN4I	GGNNCC	2 cut(s)	51, 660
PspPI	GGNCC	2 cut(s)	49, 659
PspPPI	RGGWCCY	1 cut(s)	659
PsyI	GACNNNGTC	2 cut(s)	526, 702
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	729
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	2 cut(s)	512, 628
Sau96I	GGNCC	2 cut(s)	49, 659
ScrFI	CCNGG	3 cut(s)	124, 430, 624
SduI	GDGCHC	1 cut(s)	645
SfaNI	GCATC	2 cut(s)	116, 543
Sfr274I	CTCGAG	1 cut(s)	692
SinI	GGWCC	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	3 cut(s)	389, 474, 692
SmoI	CTYRAG	3 cut(s)	389, 474, 692
Sse9I	AATT	4 cut(s)	22, 213, 368, 454
SsiI	CCGC	1 cut(s)	415
SspMI	CTAG	2 cut(s)	525, 654
StyD4I	CCNGG	3 cut(s)	122, 428, 622
StyI	CCWWGG	2 cut(s)	138, 312
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	693
TasI	AATT	4 cut(s)	22, 213, 368, 454
TauI	GCSGC	1 cut(s)	418
TscAI	CASTG	2 cut(s)	79, 152
TspDTI	ATGAA	5 cut(s)	93, 344, 474, 579, 747
TspRI	CASTG	2 cut(s)	79, 152
Tth111I	GACNNNGTC	2 cut(s)	526, 702
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	2 cut(s)	22, 368
XceI	RCATGY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	692
XspI	CTAG	2 cut(s)	525, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.