Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006349.1

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Forward (+)

84391 .. 87999

Gene Structure 3609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006349.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atggaggcactggattctttgggagagcctgatatcaatgatgtcgaagaagaagaagaagaacaagttcactatgcttctgggcccgcatccaaattgcaacccagggcggttgtgtccaaggctcgctggaatgatgagatgggcatggctcagctcgtagttcagaagggcacattttccaagtctactggaattgttcgtagtggcaacctctattactccattgaggaagttctgtttttggttgaaataggggctttagttctattggatgagagtgatactggcctttccttggaagacgtatatgtgaagatgtcaggtggcaagtatggatgctgttgggaggaatttcgagcttataggcaactcaaatctcttggttacattgttgggcgttatggtattccctggtctatgaagaaggctaagagtaattgtgaatctatttcttcccaaggttgtcctgacagtgacgaggcggtgaacttggaatcagaagagatcaggtctgtcattggattgttcaatgagatgcagattaatgaagccaggccggtttttaatgtgtatctacctaacagcaagttcaggaagtcttctcccggtgatccatgctttgtgctctgttttgctaggggatatccgccatccagagcagagcttgaagcccttgagggacaatgtaggagcattcctttgaagttttgtaatgtggagcagggacggatccgagagctctctctgaaatcgtcgggcgtcagcgacggcgaatttctggagctttgcttccagtggttcactggcggaggcagattttggagacggagaatggcggaggagctggtatcgagctggtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

288

Amino Acids

32.42

Weight (kDa)

4.88

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	6 cut(s)	87, 110, 485, 650, 810, 839
AclWI	GGATC	3 cut(s)	608, 727, 740
AcsI	RAATTY	2 cut(s)	353, 776
AcyI	GRCGYC	1 cut(s)	762
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	251, 532, 671, 706
AjnI	CCWGG	3 cut(s)	104, 413, 554
AluBI	AGCT	7 cut(s)	157, 362, 667, 742, 787, 847, 858
AluI	AGCT	7 cut(s)	157, 362, 667, 742, 787, 847, 858
Alw21I	GWGCWC	2 cut(s)	630, 744
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	3 cut(s)	608, 727, 740
AoxI	GGCC	3 cut(s)	83, 289, 557
ApaI	GGGCCC	1 cut(s)	87
ApoI	RAATTY	2 cut(s)	353, 776
AseI	ATTAAT	1 cut(s)	546
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	2 cut(s)	83, 84
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	499, 623
BaeGI	GKGCMC	2 cut(s)	87, 176
BamHI	GGATCC	1 cut(s)	732
BanII	GRGCYC	2 cut(s)	87, 744
BbsI	GAAGAC	2 cut(s)	309, 594
Bbv12I	GWGCWC	2 cut(s)	630, 744
BccI	CCATC	2 cut(s)	136, 661
BceAI	ACGGC	1 cut(s)	787
BciT130I	CCWGG	3 cut(s)	106, 415, 556
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	1 cut(s)	639
BlpI	GCTNAGC	1 cut(s)	153
Bme1390I	CCNGG	4 cut(s)	106, 415, 556, 609
BmgT120I	GGNCC	2 cut(s)	83, 84
BmiI	GGNNCC	2 cut(s)	85, 734
BmrFI	CCNGG	4 cut(s)	106, 415, 556, 609
BmsI	GCATC	3 cut(s)	98, 329, 528
BpiI	GAAGAC	2 cut(s)	309, 594
BpmI	CTGGAG	1 cut(s)	803
Bpu1102I	GCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	698
BpuMI	CCSGG	1 cut(s)	609
BsaHI	GRCGYC	1 cut(s)	762
BsaJI	CCNNGG	6 cut(s)	104, 105, 120, 297, 413, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	559
Bse1I	ACTGG	5 cut(s)	15, 196, 292, 796, 811
BseBI	CCWGG	3 cut(s)	106, 415, 556
BseDI	CCNNGG	6 cut(s)	104, 105, 120, 297, 413, 460
BseGI	GGATG	4 cut(s)	89, 280, 344, 653
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	167
BseNI	ACTGG	5 cut(s)	15, 196, 292, 796, 811
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	2 cut(s)	87, 176
BshFI	GGCC	3 cut(s)	85, 291, 559
BsiHKAI	GWGCWC	2 cut(s)	630, 744
BsiSI	CCGG	2 cut(s)	560, 609
BslFI	GGGAC	2 cut(s)	696, 741
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	820
BsmBI	CGTCTC	1 cut(s)	820
BsmFI	GGGAC	2 cut(s)	696, 741
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	3 cut(s)	85, 291, 559
Bsp120I	GGGCCC	1 cut(s)	83
Bsp1286I	GDGCHC	4 cut(s)	87, 176, 630, 744
Bsp143I	GATC	3 cut(s)	507, 613, 732
Bsp1720I	GCTNAGC	1 cut(s)	153
BspACI	CCGC	6 cut(s)	87, 110, 485, 650, 810, 839
BspANI	GGCC	3 cut(s)	85, 291, 559
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	85, 734
BspPI	GGATC	3 cut(s)	608, 727, 740
BsrFI	RCCGGY	1 cut(s)	559
BsrI	ACTGG	5 cut(s)	15, 196, 292, 796, 811
BssAI	RCCGGY	1 cut(s)	559
BssECI	CCNNGG	6 cut(s)	104, 105, 120, 297, 413, 460
BssMI	GATC	3 cut(s)	507, 613, 732
BssNI	GRCGYC	1 cut(s)	762
BssT1I	CCWWGG	3 cut(s)	120, 297, 460
Bst2UI	CCWGG	3 cut(s)	106, 415, 556
Bst4CI	ACNGT	1 cut(s)	476
Bst6I	CTCTTC	1 cut(s)	498
BstACI	GRCGYC	1 cut(s)	762
BstC8I	GCNNGC	2 cut(s)	87, 127
BstDEI	CTNAG	2 cut(s)	153, 432
BstF5I	GGATG	4 cut(s)	89, 280, 344, 653
BstKTI	GATC	3 cut(s)	510, 616, 735
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	3 cut(s)	507, 613, 732
BstNI	CCWGG	3 cut(s)	106, 415, 556
BstSCI	CCNGG	4 cut(s)	104, 413, 554, 607
BstSLI	GKGCMC	2 cut(s)	87, 176
BstV2I	GAAGAC	2 cut(s)	309, 594
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	85, 291, 559
BtsCI	GGATG	4 cut(s)	89, 280, 344, 653
BtsIMutI	CAGTG	4 cut(s)	8, 481, 803, 804
Cac8I	GCNNGC	2 cut(s)	87, 127
Cfr10I	RCCGGY	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	83, 84
CseI	GACGC	1 cut(s)	751
CviAII	CATG	2 cut(s)	148, 618
DdeI	CTNAG	2 cut(s)	153, 432
DpnI	GATC	3 cut(s)	509, 615, 734
DpnII	GATC	3 cut(s)	507, 613, 732
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	3 cut(s)	639, 825, 854
Ecl136II	GAGCTC	1 cut(s)	742
Eco130I	CCWWGG	3 cut(s)	120, 297, 460
Eco24I	GRGCYC	2 cut(s)	87, 744
Eco32I	GATATC	2 cut(s)	34, 647
Eco53kI	GAGCTC	1 cut(s)	742
EcoICRI	GAGCTC	1 cut(s)	742
EcoRII	CCWGG	3 cut(s)	104, 413, 554
EcoRV	GATATC	2 cut(s)	34, 647
EcoT14I	CCWWGG	3 cut(s)	120, 297, 460
EcoT38I	GRGCYC	2 cut(s)	87, 744
ErhI	CCWWGG	3 cut(s)	120, 297, 460
Esp3I	CGTCTC	1 cut(s)	820
FaeI	CATG	2 cut(s)	151, 621
FaiI	YATR	9 cut(s)	75, 149, 310, 312, 336, 366, 405, 422, 619
FaqI	GGGAC	2 cut(s)	696, 741
FatI	CATG	2 cut(s)	147, 617
FauI	CCCGC	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	188
FokI	GGATG	4 cut(s)	76, 287, 351, 640
FriOI	GRGCYC	2 cut(s)	87, 744
FspBI	CTAG	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	803
HaeIII	GGCC	3 cut(s)	85, 291, 559
HapII	CCGG	2 cut(s)	560, 609
HgaI	GACGC	1 cut(s)	751
Hin1I	GRCGYC	1 cut(s)	762
Hin1II	CATG	2 cut(s)	151, 621
HinfI	GANTC	3 cut(s)	14, 446, 497
HpaII	CCGG	2 cut(s)	560, 609
HphI	GGTGA	2 cut(s)	499, 623
Hpy166II	GTNNAC	4 cut(s)	70, 189, 490, 804
Hpy188I	TCNGA	4 cut(s)	168, 502, 737, 750
Hpy188III	TCNNGA	4 cut(s)	470, 595, 657, 782
Hpy8I	GTNNAC	4 cut(s)	70, 189, 490, 804
Hpy99I	CGWCG	2 cut(s)	760, 773
HpyAV	CCTTC	2 cut(s)	163, 421
HpyCH4III	ACNGT	1 cut(s)	476
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	2 cut(s)	100, 541
HpyF3I	CTNAG	2 cut(s)	153, 432
HpySE526I	ACGT	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	762
Hsp92II	CATG	2 cut(s)	151, 621
Kzo9I	GATC	3 cut(s)	507, 613, 732
LmnI	GCTCC	4 cut(s)	693, 721, 784, 844
LweI	GCATC	3 cut(s)	98, 329, 528
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	2 cut(s)	386, 476
MalI	GATC	3 cut(s)	509, 615, 734
MboI	GATC	3 cut(s)	507, 613, 732
MflI	RGATCY	1 cut(s)	732
MhlI	GDGCHC	4 cut(s)	87, 176, 630, 744
MluCI	AATT	5 cut(s)	95, 195, 353, 439, 776
MnlI	CCTC	7 cut(s)	223, 224, 343, 475, 673, 806, 835
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	546, 567
MspI	CCGG	2 cut(s)	560, 609
MspR9I	CCNGG	4 cut(s)	106, 415, 556, 609
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	3 cut(s)	106, 415, 556
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	3 cut(s)	507, 613, 732
NlaIII	CATG	2 cut(s)	151, 621
NlaIV	GGNNCC	2 cut(s)	85, 734
NmuCI	GTSAC	1 cut(s)	476
PasI	CCCWGGG	1 cut(s)	105
PctI	GAATGC	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	14, 446, 497
PshBI	ATTAAT	1 cut(s)	546
Psp124BI	GAGCTC	1 cut(s)	744
Psp6I	CCWGG	3 cut(s)	104, 413, 554
PspGI	CCWGG	3 cut(s)	104, 413, 554
PspN4I	GGNNCC	2 cut(s)	85, 734
PspOMI	GGGCCC	1 cut(s)	83
PspPI	GGNCC	2 cut(s)	83, 84
PsuI	RGATCY	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	2 cut(s)	546, 567
Sau3AI	GATC	3 cut(s)	507, 613, 732
Sau96I	GGNCC	2 cut(s)	83, 84
ScrFI	CCNGG	4 cut(s)	106, 415, 556, 609
SduI	GDGCHC	4 cut(s)	87, 176, 630, 744
SfaNI	GCATC	3 cut(s)	98, 329, 528
SmlI	CTYRAG	1 cut(s)	677
SmoI	CTYRAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	95, 195, 353, 439, 776
SsiI	CCGC	6 cut(s)	87, 110, 485, 650, 810, 839
SspMI	CTAG	1 cut(s)	639
SstI	GAGCTC	1 cut(s)	744
StyD4I	CCNGG	4 cut(s)	104, 413, 554, 607
StyI	CCWWGG	3 cut(s)	120, 297, 460
TaaI	ACNGT	1 cut(s)	476
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	3 cut(s)	45, 358, 854
TasI	AATT	5 cut(s)	95, 195, 353, 439, 776
TfiI	GAWTC	3 cut(s)	14, 446, 497
Tru1I	TTAA	2 cut(s)	546, 567
Tru9I	TTAA	2 cut(s)	546, 567
TscAI	CASTG	4 cut(s)	15, 481, 803, 811
TseFI	GTSAC	1 cut(s)	476
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	2 cut(s)	437, 564
TspGWI	ACGGA	2 cut(s)	745, 844
TspRI	CASTG	4 cut(s)	15, 481, 803, 811
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	353, 776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	188
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.