Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Reverse (-)

6965210 .. 6968432

Gene Structure 3223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGAGGTCGCGGACCGAGAGAATTACTTAGGAGAGGGTGTTATTGAGGCCTATTCACAAAAATCCAATGACATTGATGAACATGAAGATCACTATGCTTCTGCGTCTTCTTCCAAGTCGCAATTCAGGAGAGTGGCATTGAAGGCTCGCTGGAGTGATGAGACGGGCATGGCTGAGGTTGTAGATAAAAGGGGTACAATTTGGAGGACCACGGGAATTGTTCGTAGTAGCAAGCTCTATTTCTCCATTGAGGAAGTTTTGTTTTTGATTGAAATAGGGGCTTTGCTTCTTATGGATGATGGTGATATTAGCCTTTCCTTGGAAGACATGCATGTGAAGATTTCAAATGGAAAGCACGGGTGCAGTTGGGAGGAATTTCAAGCTTATAGGCAACTCAAATCTCTTGGTTACATTGTTGGGCGACATGGCATCCCCTGGTCTATGAAGATTGTGAAGAGTAATCATGAATCTGTTTCTTCTTACGGTTGCCGTGACAATGATGAGGCAGTGGACTTGGATTCAGAAGAGTCTAGGTCTGTCTTTGGATTGTTCAATGAGATGCAAATTGATGAAGCAAGGCTGGTTTTTGATGTTTATCTCCCAAACAGCAACTTCAGGAAGTCTTCTCCTGGTGACCCAAGTTTTGTGCTCTGCTTTACCAGGGGTCATCCACCATCCAAAGCAGACCTAGAAGCCCTCGAGAGACGATGCAGGAACATTCCCGTGAAGGTTTGTCATGTGGAGCAGGGGGGTGTGAGTTTATTTTCCTTTGACAAGGTGGAACTTCCAATTCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

267

Amino Acids

30.06

Weight (kDa)

5.18

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	598
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	5 cut(s)	142, 272, 345, 380, 553
AjnI	CCWGG	3 cut(s)	434, 628, 659
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	2 cut(s)	235, 383
AluI	AGCT	2 cut(s)	235, 383
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	2 cut(s)	155, 697
Ama87I	CYCGRG	1 cut(s)	698
AoxI	GGCC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	374
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
AspS9I	GGNCC	2 cut(s)	13, 207
AsuHPI	GGTGA	2 cut(s)	314, 644
AvaI	CYCGRG	1 cut(s)	698
AvaII	GGWCC	2 cut(s)	13, 207
BbsI	GAAGAC	3 cut(s)	99, 330, 615
Bbv12I	GWGCWC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	174
BccI	CCATC	2 cut(s)	293, 682
BceAI	ACGGC	1 cut(s)	474
BciT130I	CCWGG	3 cut(s)	436, 630, 661
BcoDI	GTCTC	2 cut(s)	155, 697
BfaI	CTAG	2 cut(s)	531, 689
Bme1390I	CCNGG	3 cut(s)	436, 630, 661
Bme18I	GGWCC	2 cut(s)	13, 207
BmeT110I	CYCGRG	1 cut(s)	698
BmgT120I	GGNCC	2 cut(s)	13, 207
BmrFI	CCNGG	3 cut(s)	436, 630, 661
BmsI	GCATC	3 cut(s)	438, 549, 698
BpiI	GAAGAC	3 cut(s)	99, 330, 615
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	594
BsaJI	CCNNGG	4 cut(s)	210, 318, 434, 660
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	3 cut(s)	436, 630, 661
BseDI	CCNNGG	4 cut(s)	210, 318, 434, 660
BseGI	GGATG	4 cut(s)	301, 429, 667, 674
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	651
BsiHKCI	CYCGRG	1 cut(s)	698
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	155, 697
BsmBI	CGTCTC	2 cut(s)	155, 697
BsnI	GGCC	1 cut(s)	50
BsoBI	CYCGRG	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	166
BspFNI	CGCG	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	463
BssECI	CCNNGG	4 cut(s)	210, 318, 434, 660
BssMI	GATC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	3 cut(s)	436, 630, 661
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	449, 519
BstC8I	GCNNGC	2 cut(s)	148, 233
BstDEI	CTNAG	2 cut(s)	28, 174
BstDSI	CCRYGG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	632
BstF5I	GGATG	4 cut(s)	301, 429, 667, 674
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	155, 697
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	3 cut(s)	436, 630, 661
BstNSI	RCATGY	2 cut(s)	331, 335
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	3 cut(s)	434, 628, 659
BstUI	CGCG	1 cut(s)	11
BstV2I	GAAGAC	3 cut(s)	99, 330, 615
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	301, 429, 667, 674
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	2 cut(s)	148, 233
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	2 cut(s)	13, 207
CpoI	CGGWCCG	1 cut(s)	13
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	195
CspCI	CAANNNNNGTGG	2 cut(s)	199, 234
CspI	CGGWCCG	1 cut(s)	13
CviAII	CATG	7 cut(s)	83, 169, 328, 332, 425, 464, 737
CviJI	RGCY	9 cut(s)	50, 146, 173, 235, 281, 312, 383, 580, 695
CviKI_1	RGCY	9 cut(s)	50, 146, 173, 235, 281, 312, 383, 580, 695
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	28, 174
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	2 cut(s)	449, 519
EarI	CTCTTC	2 cut(s)	449, 519
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	2 cut(s)	13, 207
Eco57I	CTGAAG	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	698
Eco91I	GGTNACC	1 cut(s)	632
EcoO65I	GGTNACC	1 cut(s)	632
EcoRII	CCWGG	3 cut(s)	434, 628, 659
EcoT14I	CCWWGG	1 cut(s)	318
EcoT22I	ATGCAT	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	318
Esp3I	CGTCTC	2 cut(s)	155, 697
FaeI	CATG	7 cut(s)	86, 172, 331, 335, 428, 467, 740
FatI	CATG	7 cut(s)	82, 168, 327, 331, 424, 463, 736
FokI	GGATG	4 cut(s)	308, 416, 654, 661
FspBI	CTAG	2 cut(s)	531, 689
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	50
HgaI	GACGC	1 cut(s)	93
Hin1II	CATG	7 cut(s)	86, 172, 331, 335, 428, 467, 740
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	3 cut(s)	467, 518, 527
HphI	GGTGA	2 cut(s)	314, 644
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	4 cut(s)	127, 464, 616, 700
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	136, 721
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	4 cut(s)	331, 363, 562, 711
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	28, 174
Hsp92II	CATG	7 cut(s)	86, 172, 331, 335, 428, 467, 740
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	742
LweI	GCATC	3 cut(s)	438, 549, 698
MaeI	CTAG	2 cut(s)	531, 689
MaeIII	GTNAC	3 cut(s)	407, 491, 632
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	7 cut(s)	22, 122, 198, 216, 374, 564, 789
MlyI	GAGTC	1 cut(s)	536
MnlI	CCTC	8 cut(s)	28, 40, 169, 198, 244, 364, 496, 707
Mph1103I	ATGCAT	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	332, 722
MspR9I	CCNGG	3 cut(s)	436, 630, 661
MvaI	CCWGG	3 cut(s)	436, 630, 661
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	1 cut(s)	88
NlaIII	CATG	7 cut(s)	86, 172, 331, 335, 428, 467, 740
NmuCI	GTSAC	2 cut(s)	491, 632
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	2 cut(s)	331, 335
PaeR7I	CTCGAG	1 cut(s)	698
PagI	TCATGA	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	467, 518
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp6I	CCWGG	3 cut(s)	434, 628, 659
PspEI	GGTNACC	1 cut(s)	632
PspGI	CCWGG	3 cut(s)	434, 628, 659
PspPI	GGNCC	2 cut(s)	13, 207
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	2 cut(s)	332, 722
Rsr2I	CGGWCCG	1 cut(s)	13
RsrII	CGGWCCG	1 cut(s)	13
Sau3AI	GATC	1 cut(s)	88
Sau96I	GGNCC	2 cut(s)	13, 207
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	3 cut(s)	436, 630, 661
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	8 cut(s)	9, 180, 237, 385, 536, 690, 732, 780
SfaNI	GCATC	3 cut(s)	438, 549, 698
Sfr274I	CTCGAG	1 cut(s)	698
SinI	GGWCC	2 cut(s)	13, 207
SlaI	CTCGAG	1 cut(s)	698
SmiMI	CAYNNNNRTG	2 cut(s)	332, 722
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
Sse9I	AATT	7 cut(s)	22, 122, 198, 216, 374, 564, 789
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	531, 689
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	434, 628, 659
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	1 cut(s)	699
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	7 cut(s)	22, 122, 198, 216, 374, 564, 789
TfiI	GAWTC	2 cut(s)	467, 518
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	2 cut(s)	491, 632
Tsp45I	GTSAC	2 cut(s)	491, 632
TspDTI	ATGAA	5 cut(s)	93, 99, 458, 480, 585
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	13, 207
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	2 cut(s)	331, 335
XhoI	CTCGAG	1 cut(s)	698
XspI	CTAG	2 cut(s)	531, 689
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.