Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Forward (+)

5178576 .. 5181439

Gene Structure 2864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G048800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGCACCGTCTACGACGCCTTCACTTCCCTCAAATTCAACACTCAAGGCGCCGAGGACGACCGTAGTGGAGGAGTCGGGTCGGGTCACCAGTCAGATGCGCCACCCGTTTGGGCTGACCCAGGAAGCGCCCCGAATCCCCAGGCAGCTGGGGCGTGCGGCAGCGGCGGCGGTAATAATAATCAGGTGGTTGAGGCCCTAGAGGCTAGGATTAGTGTGCTCAAAGCTGAGGATTTGAAGGAACAGGCGTGCGATTTTCTGATGGGGCAAGGGGAGATATGTGCTTGTGGATCCTGTCTGACTCTGAATAGAATTGAGGCTGCTAATGATGAAAAGATTGTTGGTGATACCGATGAGTCTTGCATATCCAAAGCACATTGGAATCATGAGATGGGCATGGCTGAGGTCATTGTTCTTGAGGGTACAAATTGGAAGAACATAGGAGTTATCCGGAACGGCAACAAGCTCTTTTGCTCTATTTATGAAGTTTTGTTTTTAGTTGAAAAAGGGCATTTGCGTCTCTTGGATGATAGTGGTACTAGCACTTCCTTGGAGGATATATATATGAAGATTTCAGATGAAAATAATAGGTGGTATTGGGAGGAATTTCAAGCGTATAGGAAACTCAAATCCCTTGGGTACATTGTTGGGCAGCATGGTATCCCCTGGTCTACAATTGGCGTGAAGAGTAAGTGTGAATTTGTTTCTTCTAAAGGTTGTCCTAAAATTGATGAGGCGGTGGACTTCGAAACCAATGACACTAGTTCTTCCAATGGATTGTTCAATGAGATGCGGAGTAATGAAGCAAGACCGGTTTTTGATGTTTATGCCCCAAACAAAAACTTCAAGAAGTCTTCTCCTGGAGATCCATGTTTTGTGCTTTGTTTTACTAGGTCTCGTCCGCCATCCAAACTAGACCTTGAAGCTCTCGAGAGACAATGTGGGAGCATTCCTTTAAAGTTTTGTCATGTGGATTATGGATCAGCAAGTTTCTTCTCCTTTGACAAGGTGGAACTTCCTACCCTACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

344

Amino Acids

37.56

Weight (kDa)

4.91

Isoelectric Point (pI)

34.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	5, 50
AccI	GTMKAC	2 cut(s)	12, 671
AccIII	TCCGGA	1 cut(s)	450
AciI	CCGC	7 cut(s)	159, 165, 168, 171, 737, 793, 902
AclWI	GGATC	4 cut(s)	285, 298, 860, 988
AcsI	RAATTY	3 cut(s)	35, 605, 698
AcyI	GRCGYC	2 cut(s)	18, 51
AfaI	GTAC	3 cut(s)	424, 538, 641
AgeI	ACCGGT	1 cut(s)	811
AgsI	TTSAA	7 cut(s)	40, 238, 503, 611, 784, 847, 923
AhlI	ACTAGT	1 cut(s)	761
AjnI	CCWGG	4 cut(s)	121, 141, 665, 859
AjuI	GAANNNNNNNTTGG	4 cut(s)	324, 356, 764, 796
AluBI	AGCT	4 cut(s)	149, 227, 466, 926
AluI	AGCT	4 cut(s)	149, 227, 466, 926
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	3 cut(s)	524, 900, 928
AlwI	GGATC	4 cut(s)	285, 298, 860, 988
Ama87I	CYCGRG	1 cut(s)	929
Aor13HI	TCCGGA	1 cut(s)	450
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	4 cut(s)	146, 162, 320, 652
ApoI	RAATTY	3 cut(s)	35, 605, 698
AsiGI	ACCGGT	1 cut(s)	811
AspLEI	GCGC	3 cut(s)	53, 103, 131
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	2 cut(s)	80, 356
AsuII	TTCGAA	1 cut(s)	747
AvaI	CYCGRG	1 cut(s)	929
BaeGI	GKGCMC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	290
BanI	GGYRCC	2 cut(s)	5, 50
BarI	GAAGNNNNNNTAC	2 cut(s)	529, 561
BbsI	GAAGAC	1 cut(s)	846
Bbv12I	GWGCWC	1 cut(s)	222
BbvCI	CCTCAGC	2 cut(s)	228, 402
BbvI	GCAGC	4 cut(s)	158, 174, 307, 664
BccI	CCATC	3 cut(s)	256, 385, 913
BceAI	ACGGC	1 cut(s)	472
BciT130I	CCWGG	4 cut(s)	123, 143, 667, 861
BciVI	GTATCC	1 cut(s)	671
BcoDI	GTCTC	3 cut(s)	524, 900, 928
BcuI	ACTAGT	1 cut(s)	761
BfaI	CTAG	6 cut(s)	200, 207, 540, 762, 891, 914
BfoI	RGCGCY	2 cut(s)	54, 132
BfuI	GTATCC	1 cut(s)	671
BglI	GCCNNNNNGGC	1 cut(s)	203
BisI	GCNGC	7 cut(s)	147, 160, 163, 166, 169, 321, 653
BlsI	GCNGC	7 cut(s)	148, 161, 164, 167, 170, 322, 654
Bme1390I	CCNGG	4 cut(s)	123, 143, 667, 861
BmeT110I	CYCGRG	1 cut(s)	929
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	7, 52, 292
BmrFI	CCNGG	4 cut(s)	123, 143, 667, 861
BmsI	GCATC	2 cut(s)	88, 780
BpiI	GAAGAC	1 cut(s)	846
BpmI	CTGGAG	1 cut(s)	882
Bpu10I	CCTNAGC	2 cut(s)	228, 402
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	30, 437
BsaHI	GRCGYC	2 cut(s)	18, 51
BsaI	GGTCTC	1 cut(s)	900
BsaJI	CCNNGG	6 cut(s)	54, 121, 141, 549, 634, 665
BsaWI	WCCGGW	2 cut(s)	450, 811
Bse118I	RCCGGY	1 cut(s)	811
Bse1I	ACTGG	1 cut(s)	91
BseAI	TCCGGA	1 cut(s)	450
BseBI	CCWGG	4 cut(s)	123, 143, 667, 861
BseDI	CCNNGG	6 cut(s)	54, 121, 141, 549, 634, 665
BseGI	GGATG	2 cut(s)	532, 905
BseMII	CTCAG	2 cut(s)	219, 393
BseNI	ACTGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	4 cut(s)	158, 174, 307, 664
BseYI	CCCAGC	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	197
BshNI	GGYRCC	2 cut(s)	5, 50
BshTI	ACCGGT	1 cut(s)	811
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	2 cut(s)	451, 812
BsmAI	GTCTC	3 cut(s)	524, 900, 928
BsmBI	CGTCTC	1 cut(s)	524
BsmI	GAATGC	1 cut(s)	948
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	900
BsoBI	CYCGRG	1 cut(s)	929
Bsp119I	TTCGAA	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	8, 222
Bsp13I	TCCGGA	1 cut(s)	450
Bsp143I	GATC	3 cut(s)	290, 865, 980
BspACI	CCGC	7 cut(s)	159, 165, 168, 171, 737, 793, 902
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	2 cut(s)	220, 394
BspEI	TCCGGA	1 cut(s)	450
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	7, 52, 292
BspPI	GGATC	4 cut(s)	285, 298, 860, 988
BspT104I	TTCGAA	1 cut(s)	747
BspT107I	GGYRCC	2 cut(s)	5, 50
BspTNI	GGTCTC	1 cut(s)	900
BsrFI	RCCGGY	1 cut(s)	811
BsrI	ACTGG	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	811
BssECI	CCNNGG	6 cut(s)	54, 121, 141, 549, 634, 665
BssMI	GATC	3 cut(s)	290, 865, 980
BssNI	GRCGYC	2 cut(s)	18, 51
BssT1I	CCWWGG	2 cut(s)	549, 634
Bst2UI	CCWGG	4 cut(s)	123, 143, 667, 861
Bst4CI	ACNGT	2 cut(s)	10, 65
Bst6I	CTCTTC	1 cut(s)	680
BstACI	GRCGYC	2 cut(s)	18, 51
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	157, 250
BstDEI	CTNAG	2 cut(s)	228, 402
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	532, 905
BstH2I	RGCGCY	2 cut(s)	54, 132
BstHHI	GCGC	3 cut(s)	53, 103, 131
BstKTI	GATC	3 cut(s)	293, 868, 983
BstMAI	GTCTC	3 cut(s)	524, 900, 928
BstMBI	GATC	3 cut(s)	290, 865, 980
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	152, 165, 168, 203
BstNI	CCWGG	4 cut(s)	123, 143, 667, 861
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	4 cut(s)	121, 141, 665, 859
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	4 cut(s)	158, 174, 307, 664
BstV2I	GAAGAC	1 cut(s)	846
BstX2I	RGATCY	2 cut(s)	290, 865
BstXI	CCANNNNNNTGG	2 cut(s)	111, 149
BstYI	RGATCY	2 cut(s)	290, 865
BsuI	GTATCC	1 cut(s)	671
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	532, 905
Cac8I	GCNNGC	2 cut(s)	157, 250
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	3 cut(s)	53, 103, 131
Cfr10I	RCCGGY	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	196
CseI	GACGC	2 cut(s)	26, 506
Csp6I	GTAC	3 cut(s)	423, 537, 640
CspAI	ACCGGT	1 cut(s)	811
CviAII	CATG	5 cut(s)	386, 397, 656, 870, 968
CviJI	RGCY	9 cut(s)	116, 149, 197, 206, 227, 320, 401, 466, 926
CviKI_1	RGCY	9 cut(s)	116, 149, 197, 206, 227, 320, 401, 466, 926
CviQI	GTAC	3 cut(s)	423, 537, 640
DdeI	CTNAG	2 cut(s)	228, 402
DinI	GGCGCC	1 cut(s)	52
DpnI	GATC	3 cut(s)	292, 867, 982
DpnII	GATC	3 cut(s)	290, 865, 980
DraI	TTTAAA	1 cut(s)	957
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
EciI	GGCGGA	1 cut(s)	891
Eco130I	CCWWGG	2 cut(s)	549, 634
Eco31I	GGTCTC	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	929
Eco91I	GGTNACC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	196
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	4 cut(s)	121, 141, 665, 859
EcoT14I	CCWWGG	2 cut(s)	549, 634
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
ErhI	CCWWGG	2 cut(s)	549, 634
Esp3I	CGTCTC	1 cut(s)	524
FaeI	CATG	5 cut(s)	389, 400, 659, 873, 971
FatI	CATG	5 cut(s)	385, 396, 655, 869, 967
FblI	GTMKAC	2 cut(s)	12, 671
Fnu4HI	GCNGC	7 cut(s)	147, 160, 163, 166, 169, 321, 653
FokI	GGATG	2 cut(s)	539, 892
Fsp4HI	GCNGC	7 cut(s)	147, 160, 163, 166, 169, 321, 653
FspBI	CTAG	6 cut(s)	200, 207, 540, 762, 891, 914
GlaI	GCGC	3 cut(s)	52, 102, 130
GluI	GCNGC	7 cut(s)	147, 160, 163, 166, 169, 321, 653
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	882
HaeII	RGCGCY	2 cut(s)	54, 132
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	2 cut(s)	451, 812
HgaI	GACGC	2 cut(s)	26, 506
HhaI	GCGC	3 cut(s)	53, 103, 131
Hin1I	GRCGYC	2 cut(s)	18, 51
Hin1II	CATG	5 cut(s)	389, 400, 659, 873, 971
Hin6I	GCGC	3 cut(s)	51, 101, 129
HinP1I	GCGC	3 cut(s)	51, 101, 129
HinfI	GANTC	5 cut(s)	75, 136, 301, 356, 382
HpaII	CCGG	2 cut(s)	451, 812
HphI	GGTGA	2 cut(s)	80, 356
Hpy166II	GTNNAC	3 cut(s)	13, 672, 742
Hpy188I	TCNGA	5 cut(s)	97, 261, 300, 306, 577
Hpy188III	TCNNGA	6 cut(s)	386, 416, 451, 847, 929, 931
Hpy8I	GTNNAC	3 cut(s)	13, 672, 742
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	31, 232
HpyCH4III	ACNGT	2 cut(s)	10, 65
HpyCH4V	TGCA	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	4 cut(s)	152, 165, 168, 203
HpyF3I	CTNAG	2 cut(s)	228, 402
Hsp92I	GRCGYC	2 cut(s)	18, 51
Hsp92II	CATG	5 cut(s)	389, 400, 659, 873, 971
HspAI	GCGC	3 cut(s)	51, 101, 129
KasI	GGCGCC	1 cut(s)	50
Kpn2I	TCCGGA	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	290, 865, 980
LmnI	GCTCC	1 cut(s)	945
Lsp1109I	GCAGC	4 cut(s)	158, 174, 307, 664
LweI	GCATC	2 cut(s)	88, 780
MaeI	CTAG	6 cut(s)	200, 207, 540, 762, 891, 914
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	292, 867, 982
MboI	GATC	3 cut(s)	290, 865, 980
MboII	GAAGA	7 cut(s)	445, 580, 697, 699, 759, 846, 985
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	2 cut(s)	290, 865
MhlI	GDGCHC	2 cut(s)	8, 222
MluCI	AATT	7 cut(s)	35, 312, 427, 605, 675, 698, 726
Mly113I	GGCGCC	1 cut(s)	51
MlyI	GAGTC	3 cut(s)	84, 295, 365
MroI	TCCGGA	1 cut(s)	450
MseI	TTAA	1 cut(s)	956
MspA1I	CMGCKG	2 cut(s)	149, 165
MspI	CCGG	2 cut(s)	451, 812
MspR9I	CCNGG	4 cut(s)	123, 143, 667, 861
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	948
MvaI	CCWGG	4 cut(s)	123, 143, 667, 861
MwoI	GCNNNNNNNGC	4 cut(s)	152, 165, 168, 203
NarI	GGCGCC	1 cut(s)	51
NdeII	GATC	3 cut(s)	290, 865, 980
NlaIII	CATG	5 cut(s)	389, 400, 659, 873, 971
NlaIV	GGNNCC	3 cut(s)	7, 52, 292
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	747
PaeR7I	CTCGAG	1 cut(s)	929
PagI	TCATGA	1 cut(s)	385
PctI	GAATGC	1 cut(s)	948
PfeI	GAWTC	2 cut(s)	136, 382
PfoI	TCCNGGA	1 cut(s)	859
PinAI	ACCGGT	1 cut(s)	811
PkrI	GCNGC	7 cut(s)	148, 161, 164, 167, 170, 322, 654
PleI	GAGTC	3 cut(s)	83, 295, 364
PluTI	GGCGCC	1 cut(s)	54
PpsI	GAGTC	3 cut(s)	83, 295, 364
Psp6I	CCWGG	4 cut(s)	121, 141, 665, 859
PspEI	GGTNACC	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	4 cut(s)	121, 141, 665, 859
PspN4I	GGNNCC	3 cut(s)	7, 52, 292
PspPI	GGNCC	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	290, 865
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	424, 538, 641
RsaNI	GTAC	3 cut(s)	423, 537, 640
SaqAI	TTAA	1 cut(s)	956
SatI	GCNGC	7 cut(s)	147, 160, 163, 166, 169, 321, 653
Sau3AI	GATC	3 cut(s)	290, 865, 980
Sau96I	GGNCC	1 cut(s)	196
SchI	GAGTC	3 cut(s)	84, 295, 365
ScrFI	CCNGG	4 cut(s)	123, 143, 667, 861
SduI	GDGCHC	2 cut(s)	8, 222
SfaNI	GCATC	2 cut(s)	88, 780
SfoI	GGCGCC	1 cut(s)	52
Sfr274I	CTCGAG	1 cut(s)	929
SfuI	TTCGAA	1 cut(s)	747
SlaI	CTCGAG	1 cut(s)	929
SmlI	CTYRAG	3 cut(s)	45, 416, 929
SmoI	CTYRAG	3 cut(s)	45, 416, 929
SpeI	ACTAGT	1 cut(s)	761
Sse9I	AATT	7 cut(s)	35, 312, 427, 605, 675, 698, 726
SsiI	CCGC	7 cut(s)	159, 165, 168, 171, 737, 793, 902
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	6 cut(s)	200, 207, 540, 762, 891, 914
StyD4I	CCNGG	4 cut(s)	121, 141, 665, 859
StyI	CCWWGG	2 cut(s)	549, 634
TaaI	ACNGT	2 cut(s)	10, 65
TaqI	TCGA	2 cut(s)	747, 930
TasI	AATT	7 cut(s)	35, 312, 427, 605, 675, 698, 726
TauI	GCSGC	3 cut(s)	162, 168, 171
TfiI	GAWTC	2 cut(s)	136, 382
Tru1I	TTAA	1 cut(s)	956
Tru9I	TTAA	1 cut(s)	956
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	4 cut(s)	146, 162, 320, 652
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	5 cut(s)	345, 498, 581, 594, 816
XapI	RAATTY	3 cut(s)	35, 605, 698
XhoI	CTCGAG	1 cut(s)	929
XmiI	GTMKAC	2 cut(s)	12, 671
XspI	CTAG	6 cut(s)	200, 207, 540, 762, 891, 914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.