Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Reverse (-)

18205128 .. 18205529

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0205500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTTGAGGCAAGCCAGTGAAACTTTCATCAGCGGCAATGGCCATACCAAGGGGGACTTCAAGCGCCGACATTCTCTAGGGCCGAGGCGAGCCGAAGTAGTGCGTATCAGGGAGAAGTATCCTGATAGAATACCTGTGATTGTGGAGAAAGCTATATTCACTGACATTCCTAACATTGCCAAGAACAAATTCCTTATCCCTCCCGATATTTCTCTTGGACAATTTGCTTATGTTATTCGAAAGACGATCCACCTCAAAGCGGACAAGGCTATATTTGTCTTCGTCAACAACACTTTACCTCGCACTTCTGCCTTGATGTCTGAAATTTATGCAGAAAACGCGGATGAAGATGGATTCCTTTACGTGGTATACAGTGGAGAGGGTGCCTTCGGGTCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

133

Amino Acids

14.99

Weight (kDa)

9.43

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG8	PF02991	29 - 131	1.1e-41	Autophagy protein Atg8 ubiquitin like
APG12	PF04110	54 - 131	1.2e-06	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	341
AciI	CCGC	3 cut(s)	33, 260, 341
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	188, 324
AfiI	CCNNNNNNNGG	3 cut(s)	49, 259, 364
AgsI	TTSAA	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 173, 205
AluBI	AGCT	1 cut(s)	152
AluI	AGCT	1 cut(s)	152
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	40, 80
ApoI	RAATTY	2 cut(s)	188, 324
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	80
AsuII	TTCGAA	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	271
BccI	CCATC	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	129
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	48, 83
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 259, 364
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	2 cut(s)	43, 174
BseDI	CCNNGG	2 cut(s)	48, 83
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	3 cut(s)	49, 259, 364
BseMI	GCAATG	2 cut(s)	43, 174
BseNI	ACTGG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	2 cut(s)	42, 82
BshNI	GGYRCC	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	49, 259, 364
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	42, 82
Bsp119I	TTCGAA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	3 cut(s)	33, 260, 341
BspANI	GGCC	2 cut(s)	42, 82
BspFNI	CGCG	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	241
BspT104I	TTCGAA	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	2 cut(s)	43, 174
BsrI	ACTGG	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	48, 83
BssMI	GATC	1 cut(s)	246
BssNAI	GTATAC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	364
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	12, 90
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	341
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 266, 338
BstUI	CGCG	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	271
BstZ17I	GTATAC	1 cut(s)	370
BsuI	GTATCC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	42, 82
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	22, 159, 379
Cac8I	GCNNGC	2 cut(s)	12, 90
CfoI	GCGC	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	80
CviJI	RGCY	6 cut(s)	14, 42, 82, 92, 152, 269
CviKI_1	RGCY	6 cut(s)	14, 42, 82, 92, 152, 269
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaiI	YATR	6 cut(s)	45, 155, 231, 272, 330, 370
FalI	AAGNNNNNCTT	2 cut(s)	41, 73
FaqI	GGGAC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	42, 82
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	1 cut(s)	354
Hpy166II	GTNNAC	2 cut(s)	286, 370
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	2 cut(s)	122, 203
Hpy8I	GTNNAC	2 cut(s)	286, 370
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 266, 338
HpySE526I	ACGT	1 cut(s)	363
HspAI	GCGC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	28, 94, 135, 147
MaeI	CTAG	1 cut(s)	77
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	393
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	271, 359
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	3 cut(s)	188, 221, 324
MluNI	TGGCCA	1 cut(s)	42
MnlI	CCTC	5 cut(s)	78, 210, 263, 309, 373
Mox20I	TGGCCA	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	1 cut(s)	400
Msp20I	TGGCCA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	39, 266, 338
NdeII	GATC	1 cut(s)	246
NlaIV	GGNNCC	1 cut(s)	385
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	393
NspV	TTCGAA	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	35
Ppu21I	YACGTR	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	400
SatI	GCNGC	1 cut(s)	34
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	1 cut(s)	80
SetI	ASST	5 cut(s)	136, 154, 255, 301, 366
SfuI	TTCGAA	1 cut(s)	238
Sse9I	AATT	3 cut(s)	188, 221, 324
SsiI	CCGC	3 cut(s)	33, 260, 341
SspMI	CTAG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	188, 221, 324
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	354
Tru1I	TTAA	1 cut(s)	400
Tru9I	TTAA	1 cut(s)	400
TscAI	CASTG	3 cut(s)	22, 166, 379
TseFI	GTSAC	1 cut(s)	393
Tsp45I	GTSAC	1 cut(s)	393
TspDTI	ATGAA	2 cut(s)	16, 360
TspRI	CASTG	3 cut(s)	22, 166, 379
XapI	RAATTY	2 cut(s)	188, 324
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.