Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002829

Physical Location & Seq

Genomic Coordinates Forward (+)

21233147 .. 21235604

Gene Structure 2458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCAGGTGGGAAGTATGGATGCTGTTGGGAGGAATTTCGAGCTTATAGGCAACTCAAATCTCTTGGTTACATTGTTGGGCGTTATGGTATTCCCTGGTCTATGAAGAAGGCTAAGAGTAATTGTGAATCTATTTCTTCCCAAGGTTGTTCTGACAGTGATGAGGCGGTGAACTTGGAATCAGAAGAGATCAGGTCTGTCATTGGATTGTTCAATGAGATGCAGATTAATGAAGCCAGGCCGGTTTTTAATGTGTATCTCCCTAACAGCAAGTTCAGGAAGTCTTCTCCCGGTGATCCATGCTTTGTGCTCTGTTTTACTAGGCGATATCCGCCATCCAGAGCAGAGGTTGAAGCCCTCGAGGGACAATGTAGGAGCATTCCTTTGAAGTTTTGTAATGTGGAGCAGGGACGGGTGAGTTTCTTTTCCTTTGTAAAGGTGGAACTTCCTATCCTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_int_end_N2

Protein Analysis

154

Amino Acids

17.36

Weight (kDa)

8.1

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002829)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02370 AT3G02370 AT3G02370 AT3G02370 AT3G57360
fragaria_vesca	FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380 FvH4_6g24380
malus_domestica	MD12G1080400.v1.1 MD14G1076600.v1.1
prunus_persica	Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.5G048800_v2.0.a1 Prupe.7G055000_v2.0.a1
pyrus_communis	pycom12g06700 pycom14g06490
rosa_chinensis	RchiOBHm_Chr3g0483371
rosa_laevigata	RLG00000023291
rosa_multiflora	Rmu_co8010216.1_g000001 Rmu_sc0006349.1_g000013
rosa_roxburghii	Rroxscaffold_6G00398410
rosa_rugosa	Rorug03G0205200.1 Rorug03G0205300.1 Rorug03G0205400.1 Rorug03G0205500
rosa_samantha	Rh3AG253800 Rh3BG290900 Rh3CG287900 Rh3DG283700 Rh6CG217700
rosa_wichuraiana	Rw0G023700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	359
AciI	CCGC	2 cut(s)	167, 332
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	214, 353, 388
AjnI	CCWGG	2 cut(s)	95, 236
AloI	GAACNNNNNNTCC	1 cut(s)	435
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	35
AseI	ATTAAT	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	181, 305, 427
AvaI	CYCGRG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	2 cut(s)	97, 238
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	321, 455
Bme1390I	CCNGG	3 cut(s)	97, 238, 291
BmeT110I	CYCGRG	1 cut(s)	359
BmrFI	CCNGG	3 cut(s)	97, 238, 291
BmsI	GCATC	2 cut(s)	11, 210
BpiI	GAAGAC	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	95, 142
Bse118I	RCCGGY	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	97, 238
BseDI	CCNNGG	2 cut(s)	95, 142
BseGI	GGATG	2 cut(s)	26, 335
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	242, 291
BslFI	GGGAC	2 cut(s)	378, 423
BsmFI	GGGAC	2 cut(s)	378, 423
BsmI	GAATGC	1 cut(s)	378
BsnI	GGCC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	189, 295
BspACI	CCGC	2 cut(s)	167, 332
BspANI	GGCC	1 cut(s)	241
BspPI	GGATC	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	241
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	95, 142
BssMI	GATC	2 cut(s)	189, 295
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	97, 238
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	26, 335
BstKTI	GATC	2 cut(s)	192, 298
BstMBI	GATC	2 cut(s)	189, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	2 cut(s)	97, 238
BstSCI	CCNGG	3 cut(s)	95, 236, 289
BstV2I	GAAGAC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	26, 335
BtsIMutI	CAGTG	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	241
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	5 cut(s)	44, 113, 236, 241, 356
CviKI_1	RGCY	5 cut(s)	44, 113, 236, 241, 356
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	191, 297
DpnII	GATC	2 cut(s)	189, 295
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	95, 236
EcoRV	GATATC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	1 cut(s)	303
FaiI	YATR	5 cut(s)	18, 48, 87, 104, 301
FaqI	GGGAC	2 cut(s)	378, 423
FatI	CATG	1 cut(s)	299
FokI	GGATG	2 cut(s)	33, 322
FspBI	CTAG	2 cut(s)	321, 455
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	242, 291
Hin1II	CATG	1 cut(s)	303
HinfI	GANTC	2 cut(s)	128, 179
HpaII	CCGG	2 cut(s)	242, 291
HphI	GGTGA	3 cut(s)	181, 305, 427
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	154, 184
Hpy188III	TCNNGA	2 cut(s)	277, 339
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpyF3I	CTNAG	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	189, 295
LmnI	GCTCC	2 cut(s)	375, 403
LweI	GCATC	2 cut(s)	11, 210
MaeI	CTAG	2 cut(s)	321, 455
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	2 cut(s)	191, 297
MboI	GATC	2 cut(s)	189, 295
MboII	GAAGA	4 cut(s)	118, 129, 197, 276
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	2 cut(s)	35, 121
MnlI	CCTC	5 cut(s)	25, 157, 340, 355, 368
MseI	TTAA	2 cut(s)	228, 249
MspI	CCGG	2 cut(s)	242, 291
MspR9I	CCNGG	3 cut(s)	97, 238, 291
Mva1269I	GAATGC	1 cut(s)	378
MvaI	CCWGG	2 cut(s)	97, 238
MwoI	GCNNNNNNNGC	1 cut(s)	331
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	2 cut(s)	189, 295
NlaIII	CATG	1 cut(s)	303
PaeR7I	CTCGAG	1 cut(s)	359
PctI	GAATGC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	128, 179
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	2 cut(s)	95, 236
PspGI	CCWGG	2 cut(s)	95, 236
PspXI	VCTCGAGB	1 cut(s)	359
SaqAI	TTAA	2 cut(s)	228, 249
Sau3AI	GATC	2 cut(s)	189, 295
ScrFI	CCNGG	3 cut(s)	97, 238, 291
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	6 cut(s)	10, 46, 148, 197, 351, 441
SfaNI	GCATC	2 cut(s)	11, 210
Sfr274I	CTCGAG	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	35, 121
SsiI	CCGC	2 cut(s)	167, 332
SspMI	CTAG	2 cut(s)	321, 455
StyD4I	CCNGG	3 cut(s)	95, 236, 289
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	2 cut(s)	40, 360
TasI	AATT	2 cut(s)	35, 121
TfiI	GAWTC	2 cut(s)	128, 179
Tru1I	TTAA	2 cut(s)	228, 249
Tru9I	TTAA	2 cut(s)	228, 249
TscAI	CASTG	1 cut(s)	163
TspDTI	ATGAA	2 cut(s)	119, 246
TspRI	CASTG	1 cut(s)	163
VspI	ATTAAT	1 cut(s)	228
XapI	RAATTY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	359
XspI	CTAG	2 cut(s)	321, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.