FvH4_6g35220

3-oxoacyl- acyl-carrier-protein synthase II

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
27837176 .. 27841650
4475 bp
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UTR
Exon/CDS
Intron
FvH4_6g35220.t1

Sequence Viewer

Length: 1650 bp
ATGGCCTCCTCTTCTATGGGCTCAACTTCCATTAAGTCCTCTATTTGTCACTCTGCGAAAAGACTGAGTCACGGGACGAGAAGAAAGGAGCTCATGTCAAAAAGCAGATATGGCGGCAGCGTTGATTTTTCTAATATTTTGAGTTCCTCCCTATCTGTATCTGCCACTCGTAATTTCAGCAGTTCTAAGCTGGCTTTTGAGCACTGTGAAGGGTATTACAACTCCAAATTTCTATCTGAATATTTGGCATTATTTGCTGAGAAAAACATTTCATTCTTTGGATCAAGGTCTGCAGTCTCAAATACTAGAAGGCAGAGGCAGAAGGATCACATTGCTCACTCTGGCAAAACTAGGGCTGTGGCCGTCCAAGTTGCAGAGGAAGTCACAACAAAGAAGAGACCCTTAATGAAGCAAAGGCAGGTTGTTGTGACAGGCATGGGTGTGGTGACCCCTCTTGGACATGATCCAGATGTCTTCTACACTAATCTTCTTGAAGGTGTCAGTGGTATAAGTGAGATAGAGGCTTTTGACTGTACACAGTTTCCCACGAGAATTGCTGGAGAAATAAAGTCTTTGTTAACAGATGGATGGGTTGCGCCAAAGCTTTCTAAGAGGGCAGACAAGTTTATGGTGTTCTTGATCACTGCTGGGAAAAAGGCATTGGCAGATGGTGGGATTACAAAAGAAGTTATGGGAGATATAGATAAAAGTAGATGTGGGGTTGTAATTGGCTCTGCACTAGGAGGCATGAGAGTTTTTAGTGATGGAGTTGAAGCATTGAGGACTTCGTACAAGAAGATGAATCCCTTCTCTGTACCTTTTGCAACAACAAGCATGGGTTCTGCTATCCTAGCAATGGATTTGGGATGGATGGGACCTAACTACTCAATATCTACAGCTTGTGCCACCAGTAACTTTTGCATACTAAATGCTGCAAATCATATTGTCAGAGGTGAAACGGACATGATGCTTTGTGGTGGTTCTGAAGCAGCAATTATCCCCATAGGTTTGGGAGGTTTTGCAGCATGCGGGGCTCTGTCACAAAGAAATAGTGAACCAACCAAAGCTTCATGCCCTTGGGACATTAATCGTGATGGATTTGTAATGGGAGAAGGAGCTGGGGTTTTGCTTTTGGAAGAGCTAGAACATGCTCAGAGAAGAGGTGCCAATATCTATGCTGAGTTTTTAGGTGGAAGCTTCAATTGTGATGCATACCACATGACTGAGCCTCATCCTGATGGGACAGGGATTGCACTATGCATAGAGAATGCCCTTTCCCATTCTGGAGTCTCTAGAGAAGATGTAAATTACATAAATGCATACGCTACATCCACACCAACTGATCTGCAAGAATATAGAGCCCTAATCCACTGTTTCGGAAACAATCCTGAGCTAAGAGTGAATTCTACAAAATCCATGATTGGTCACCTTTTAGGAGCCTCAGGTGGTGTAGAAGCTGTGGCAACAATCAAGGCTATACAGACTGGATTTGTCCATCCGAACATCAATCTTGAGAATCCTGATGCAGGCGTGGACATGAATGTGCTTGTTGGCCCCAAGAAGGAAAAACTGGACATAAAAGTTGCATTGTCTAATTCATTTGGATTCGGTGGACACAACTCATCTATCTTGTTTGCACCGTTCAAGTGA

Protein Analysis

550

Amino Acids

58.81

Weight (kDa)

8.35

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 139 - 384 3.4e-55 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 392 - 505 4.3e-29 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
AccB1I GGYRCC 1 cut(s) 1163
AciI CCGC 2 cut(s) 114, 1029
AclWI GGATC 3 cut(s) 289, 333, 458
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 2 cut(s) 227, 1402
AcuI CTGAAG 1 cut(s) 1005
AfaI GTAC 3 cut(s) 535, 791, 816
AfiI CCNNNNNNNGG 3 cut(s) 856, 1526, 1561
AgsI TTSAA 4 cut(s) 494, 773, 1201, 1645
AjuI GAANNNNNNNTTGG 4 cut(s) 644, 676, 1051, 1083
Alw21I GWGCWC 2 cut(s) 93, 204
Alw26I GTCTC 3 cut(s) 301, 391, 1294
AlwI GGATC 3 cut(s) 289, 333, 458
AoxI GGCC 3 cut(s) 3, 360, 1552
ApeKI GCWGC 4 cut(s) 117, 932, 989, 1022
ApoI RAATTY 2 cut(s) 227, 1402
AseI ATTAAT 1 cut(s) 1086
Asp700I GAANNNNTTC 1 cut(s) 806
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 875, 1553
AsuHPI GGTGA 3 cut(s) 457, 965, 1418
AvaII GGWCC 1 cut(s) 875
AxyI CCTNAGG 1 cut(s) 1441
BanI GGYRCC 1 cut(s) 1163
BanII GRGCYC 4 cut(s) 23, 93, 1036, 1363
BauI CACGAG 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 466
Bbv12I GWGCWC 2 cut(s) 93, 204
BbvI GCAGC 4 cut(s) 129, 919, 1001, 1034
BccI CCATC 9 cut(s) 578, 582, 662, 758, 861, 865, 1088, 1232, 1503
BceAI ACGGC 1 cut(s) 347
BclI TGATCA 1 cut(s) 639
BcoDI GTCTC 3 cut(s) 301, 391, 1294
BfaI CTAG 6 cut(s) 306, 351, 740, 851, 1142, 1293
BfmI CTRYAG 2 cut(s) 291, 894
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 5 cut(s) 115, 118, 933, 990, 1023
BlsI GCNGC 5 cut(s) 116, 119, 934, 991, 1024
Bme18I GGWCC 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 875, 1553
BmiI GGNNCC 4 cut(s) 876, 1165, 1438, 1555
BmsI GCATC 3 cut(s) 957, 1198, 1513
BpiI GAAGAC 1 cut(s) 466
BpmI CTGGAG 2 cut(s) 579, 1305
Bpu10I CCTNAGC 1 cut(s) 1389
BpuEI CTTGAG 1 cut(s) 1532
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 1 cut(s) 1076
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 1107, 1137
Bsc4I CCNNNNNNNGG 3 cut(s) 856, 1526, 1561
Bse1I ACTGG 3 cut(s) 909, 1489, 1575
Bse21I CCTNAGG 1 cut(s) 1441
Bse3DI GCAATG 2 cut(s) 330, 861
BseDI CCNNGG 1 cut(s) 1076
BseGI GGATG 6 cut(s) 593, 872, 876, 1231, 1328, 1495
BseLI CCNNNNNNNGG 3 cut(s) 856, 1526, 1561
BseMI GCAATG 2 cut(s) 330, 861
BseMII CTCAG 7 cut(s) 56, 249, 1166, 1170, 1215, 1380, 1455
BseNI ACTGG 3 cut(s) 909, 1489, 1575
BseXI GCAGC 4 cut(s) 129, 919, 1001, 1034
BseYI CCCAGC 2 cut(s) 647, 1118
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 3 cut(s) 5, 362, 1554
BshNI GGYRCC 1 cut(s) 1163
BsiHKAI GWGCWC 2 cut(s) 93, 204
BslFI GGGAC 4 cut(s) 88, 888, 1094, 1255
BslI CCNNNNNNNGG 3 cut(s) 856, 1526, 1561
BsmAI GTCTC 3 cut(s) 301, 391, 1294
BsmFI GGGAC 4 cut(s) 88, 888, 1094, 1255
BsmI GAATGC 1 cut(s) 1273
BsnI GGCC 3 cut(s) 5, 362, 1554
Bso31I GGTCTC 1 cut(s) 391
Bsp1286I GDGCHC 5 cut(s) 23, 93, 204, 1036, 1363
Bsp1407I TGTACA 1 cut(s) 533
Bsp143I GATC 5 cut(s) 281, 325, 463, 639, 1342
BspACI CCGC 2 cut(s) 114, 1029
BspANI GGCC 3 cut(s) 5, 362, 1554
BspCNI CTCAG 7 cut(s) 57, 250, 1165, 1171, 1216, 1381, 1454
BspLI GGNNCC 4 cut(s) 876, 1165, 1438, 1555
BspMAI CTGCAG 1 cut(s) 295
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 3 cut(s) 289, 333, 458
BspQI GCTCTTC 1 cut(s) 1131
BspT107I GGYRCC 1 cut(s) 1163
BspTNI GGTCTC 1 cut(s) 391
BsrDI GCAATG 2 cut(s) 330, 861
BsrGI TGTACA 1 cut(s) 533
BsrI ACTGG 3 cut(s) 909, 1489, 1575
BssECI CCNNGG 1 cut(s) 1076
BssMI GATC 5 cut(s) 281, 325, 463, 639, 1342
BssSI CACGAG 1 cut(s) 547
BssT1I CCWWGG 1 cut(s) 1076
Bst2BI CACGAG 1 cut(s) 547
Bst4CI ACNGT 5 cut(s) 206, 533, 540, 1373, 1641
Bst6I CTCTTC 4 cut(s) 16, 389, 1131, 1153
BstAPI GCANNNNNTGC 1 cut(s) 254
BstAUI TGTACA 1 cut(s) 533
BstC8I GCNNGC 3 cut(s) 192, 1027, 1528
BstEII GGTNACC 2 cut(s) 445, 1424
BstENI CCTNNNNNAGG 1 cut(s) 1524
BstF5I GGATG 6 cut(s) 593, 872, 876, 1231, 1328, 1495
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 5 cut(s) 284, 328, 466, 642, 1345
BstMAI GTCTC 3 cut(s) 301, 391, 1294
BstMBI GATC 5 cut(s) 281, 325, 463, 639, 1342
BstMWI GCNNNNNNNGC 4 cut(s) 111, 254, 851, 1031
BstNSI RCATGY 2 cut(s) 1029, 1151
BstPI GGTNACC 2 cut(s) 445, 1424
BstSFI CTRYAG 2 cut(s) 291, 894
BstV1I GCAGC 4 cut(s) 129, 919, 1001, 1034
BstV2I GAAGAC 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 1009
Bsu36I CCTNAGG 1 cut(s) 1441
BsuRI GGCC 3 cut(s) 5, 362, 1554
BtsCI GGATG 6 cut(s) 593, 872, 876, 1231, 1328, 1495
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 4 cut(s) 202, 508, 642, 1369
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 192, 1027, 1528
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 2 cut(s) 875, 1553
Csp6I GTAC 3 cut(s) 534, 790, 815
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviQI GTAC 3 cut(s) 534, 790, 815
DpnI GATC 5 cut(s) 283, 327, 465, 641, 1344
DpnII GATC 5 cut(s) 281, 325, 463, 639, 1342
EaeI YGGCCR 1 cut(s) 360
Eam1104I CTCTTC 4 cut(s) 16, 389, 1131, 1153
EarI CTCTTC 4 cut(s) 16, 389, 1131, 1153
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 1076
Eco24I GRGCYC 4 cut(s) 23, 93, 1036, 1363
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 875
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 1005
Eco81I CCTNAGG 1 cut(s) 1441
Eco91I GGTNACC 2 cut(s) 445, 1424
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 1524
EcoO109I RGGNCCY 1 cut(s) 875
EcoO65I GGTNACC 2 cut(s) 445, 1424
EcoRI GAATTC 1 cut(s) 1402
EcoT14I CCWWGG 1 cut(s) 1076
EcoT22I ATGCAT 3 cut(s) 1213, 1262, 1321
EcoT38I GRGCYC 4 cut(s) 23, 93, 1036, 1363
ErhI CCWWGG 1 cut(s) 1076
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 4 cut(s) 88, 888, 1094, 1255
FauI CCCGC 1 cut(s) 1022
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 5 cut(s) 115, 118, 933, 990, 1023
FokI GGATG 6 cut(s) 600, 879, 883, 1218, 1315, 1482
FriOI GRGCYC 4 cut(s) 23, 93, 1036, 1363
Fsp4HI GCNGC 5 cut(s) 115, 118, 933, 990, 1023
FspBI CTAG 6 cut(s) 306, 351, 740, 851, 1142, 1293
GlaI GCGC 1 cut(s) 597
GluI GCNGC 5 cut(s) 115, 118, 933, 990, 1023
GsaI CCCAGC 2 cut(s) 651, 1122
GsuI CTGGAG 2 cut(s) 579, 1305
HaeIII GGCC 3 cut(s) 5, 362, 1554
HhaI GCGC 1 cut(s) 598
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HincII GTYRAC 1 cut(s) 579
HindII GTYRAC 1 cut(s) 579
HindIII AAGCTT 3 cut(s) 602, 1065, 1195
HinfI GANTC 5 cut(s) 67, 802, 1287, 1516, 1605
HpaI GTTAAC 1 cut(s) 579
HphI GGTGA 3 cut(s) 457, 965, 1418
Hpy166II GTNNAC 5 cut(s) 536, 579, 1055, 1534, 1613
Hpy188I TCNGA 6 cut(s) 238, 950, 985, 1155, 1379, 1500
Hpy8I GTNNAC 5 cut(s) 536, 579, 1055, 1534, 1613
HpyAV CCTTC 7 cut(s) 203, 303, 316, 488, 817, 1106, 1555
HpyCH4III ACNGT 5 cut(s) 206, 533, 540, 1373, 1641
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 254, 851, 1031
HspAI GCGC 1 cut(s) 596
Ksp22I TGATCA 1 cut(s) 639
KspAI GTTAAC 1 cut(s) 579
Kzo9I GATC 5 cut(s) 281, 325, 463, 639, 1342
LguI GCTCTTC 1 cut(s) 1131
LmnI GCTCC 3 cut(s) 88, 1115, 1436
Lsp1109I GCAGC 4 cut(s) 129, 919, 1001, 1034
LweI GCATC 3 cut(s) 957, 1198, 1513
MaeI CTAG 6 cut(s) 306, 351, 740, 851, 1142, 1293
MaeIII GTNAC 8 cut(s) 47, 68, 382, 427, 445, 911, 1038, 1424
MalI GATC 5 cut(s) 283, 327, 465, 641, 1344
MboI GATC 5 cut(s) 281, 325, 463, 639, 1342
MboII GAAGA 9 cut(s) 3, 93, 406, 466, 479, 808, 1148, 1170, 1310
MfeI CAATTG 1 cut(s) 1201
MhlI GDGCHC 5 cut(s) 23, 93, 204, 1036, 1363
MluCI AATT 9 cut(s) 172, 227, 552, 726, 993, 1201, 1306, 1402, 1594
MlyI GAGTC 2 cut(s) 76, 1296
Mph1103I ATGCAT 3 cut(s) 1213, 1262, 1321
MroXI GAANNNNTTC 1 cut(s) 806
MseI TTAA 4 cut(s) 33, 404, 578, 1086
MslI CAYNNNNRTG 3 cut(s) 440, 1236, 1541
MunI CAATTG 1 cut(s) 1201
Mva1269I GAATGC 1 cut(s) 1273
MwoI GCNNNNNNNGC 4 cut(s) 111, 254, 851, 1031
NdeII GATC 5 cut(s) 281, 325, 463, 639, 1342
NlaIV GGNNCC 4 cut(s) 876, 1165, 1438, 1555
NmuCI GTSAC 7 cut(s) 47, 68, 382, 427, 445, 1038, 1424
NsiI ATGCAT 3 cut(s) 1213, 1262, 1321
NspI RCATGY 2 cut(s) 1029, 1151
PaeI GCATGC 1 cut(s) 1029
PciSI GCTCTTC 1 cut(s) 1131
PctI GAATGC 1 cut(s) 1273
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 3 cut(s) 802, 1516, 1605
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 5 cut(s) 116, 119, 934, 991, 1024
PleI GAGTC 2 cut(s) 75, 1295
PpsI GAGTC 2 cut(s) 75, 1295
PpuMI RGGWCCY 1 cut(s) 875
PshBI ATTAAT 1 cut(s) 1086
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 875
PspEI GGTNACC 2 cut(s) 445, 1424
PspFI CCCAGC 2 cut(s) 647, 1118
PspN4I GGNNCC 4 cut(s) 876, 1165, 1438, 1555
PspPI GGNCC 2 cut(s) 875, 1553
PspPPI RGGWCCY 1 cut(s) 875
PstI CTGCAG 1 cut(s) 295
PsyI GACNNNGTC 1 cut(s) 66
RsaI GTAC 3 cut(s) 535, 791, 816
RsaNI GTAC 3 cut(s) 534, 790, 815
RseI CAYNNNNRTG 3 cut(s) 440, 1236, 1541
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 1131
SaqAI TTAA 4 cut(s) 33, 404, 578, 1086
SatI GCNGC 5 cut(s) 115, 118, 933, 990, 1023
Sau3AI GATC 5 cut(s) 281, 325, 463, 639, 1342
Sau96I GGNCC 2 cut(s) 875, 1553
SchI GAGTC 2 cut(s) 76, 1296
SduI GDGCHC 5 cut(s) 23, 93, 204, 1036, 1363
SfaNI GCATC 3 cut(s) 957, 1198, 1513
SfcI CTRYAG 2 cut(s) 291, 894
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 3 cut(s) 440, 1236, 1541
SmlI CTYRAG 1 cut(s) 1511
SmoI CTYRAG 1 cut(s) 1511
SphI GCATGC 1 cut(s) 1029
Sse9I AATT 9 cut(s) 172, 227, 552, 726, 993, 1201, 1306, 1402, 1594
SsiI CCGC 2 cut(s) 114, 1029
SspI AATATT 2 cut(s) 136, 242
SspMI CTAG 6 cut(s) 306, 351, 740, 851, 1142, 1293
SstI GAGCTC 1 cut(s) 93
StyI CCWWGG 1 cut(s) 1076
TaaI ACNGT 5 cut(s) 206, 533, 540, 1373, 1641
TasI AATT 9 cut(s) 172, 227, 552, 726, 993, 1201, 1306, 1402, 1594
TatI WGTACW 1 cut(s) 533
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 3 cut(s) 802, 1516, 1605
Tru1I TTAA 4 cut(s) 33, 404, 578, 1086
Tru9I TTAA 4 cut(s) 33, 404, 578, 1086
TscAI CASTG 4 cut(s) 209, 508, 649, 1376
TseFI GTSAC 7 cut(s) 47, 68, 382, 427, 445, 1038, 1424
TseI GCWGC 4 cut(s) 117, 932, 989, 1022
Tsp45I GTSAC 7 cut(s) 47, 68, 382, 427, 445, 1038, 1424
TspDTI ATGAA 6 cut(s) 261, 422, 815, 1059, 1553, 1587
TspGWI ACGGA 1 cut(s) 974
TspRI CASTG 4 cut(s) 209, 508, 649, 1376
Tth111I GACNNNGTC 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 875
VspI ATTAAT 1 cut(s) 1086
XagI CCTNNNNNAGG 1 cut(s) 1524
XapI RAATTY 2 cut(s) 227, 1402
XbaI TCTAGA 1 cut(s) 1292
XceI RCATGY 2 cut(s) 1029, 1151
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 6 cut(s) 306, 351, 740, 851, 1142, 1293
Zsp2I ATGCAT 3 cut(s) 1213, 1262, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.