Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Forward (+)

7688187 .. 7691127

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1097500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTGAGTCACACCCTGATGGGGCCGGGGTTATTCTGTGCATTGAAAAGGCTTTAGAACAGTCTGGGGTGTCTAGGGAAGATGTTAATTACATTAATGCACATGCTACATCCACACCGGCGGGAGATCTCAAGCAGTATAATGCTCTCATTCATTGTTTTGGCAAGAATCCTGATTTGAGAGTGAACTCTACAAAATCCATGATTGGTCACCTACTGGGAGCATCTGGTGCTGTAGAAGCTGTTGCAGCAGTACAGGCGATAAGAACTCGGTCGAAACATCCAATTATCAATCTGGAAAATCCAGATGAGGGTGTGGATACAAAACTACTAGTAGTGGGTCCAAAGAAAGAGAGACTGGACGTTAAAGTGACATTGTCTAACTCATTTGGGTTCGGTGGCCACAACTCATCGGTCTTGTTTGCCCCATACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

146

Amino Acids

15.46

Weight (kDa)

7.01

Isoelectric Point (pI)

26.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ketoacyl-synt_C	PF02801	2 - 100	5.2e-28	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AcoI	YGGCCR	1 cut(s)	400
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	22, 311
AgsI	TTSAA	1 cut(s)	47
AhlI	ACTAGT	1 cut(s)	331
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
Alw26I	GTCTC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	24, 400
ApeKI	GCWGC	1 cut(s)	248
AseI	ATTAAT	1 cut(s)	96
AspS9I	GGNCC	2 cut(s)	24, 341
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	1 cut(s)	14
BciVI	GTATCC	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	349
BcuI	ACTAGT	1 cut(s)	331
BfaI	CTAG	2 cut(s)	75, 332
BfmI	CTRYAG	1 cut(s)	234
BfuI	GTATCC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	2 cut(s)	24, 341
BmiI	GGNNCC	2 cut(s)	25, 342
BmrFI	CCNGG	1 cut(s)	28
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	1 cut(s)	233
BmuI	ACTGGG	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 311
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	222, 363
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	110, 280
BseLI	CCNNNNNNNGG	2 cut(s)	22, 311
BseNI	ACTGG	2 cut(s)	222, 363
BseXI	GCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	26, 402
BsiEI	CGRYCG	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	27, 119
BslI	CCNNNNNNNGG	2 cut(s)	22, 311
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	26, 402
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	26, 402
BspLI	GGNNCC	2 cut(s)	25, 342
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	222, 363
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	110, 280
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	127
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 239, 248, 257
BstNSI	RCATGY	1 cut(s)	107
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	26, 402
BtsCI	GGATG	2 cut(s)	110, 280
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	24, 341
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	104, 202
CviJI	RGCY	4 cut(s)	26, 53, 242, 402
CviKI_1	RGCY	4 cut(s)	26, 53, 242, 402
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EaeI	YGGCCR	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	209
EcoO65I	GGTNACC	1 cut(s)	209
FaeI	CATG	2 cut(s)	107, 205
FaiI	YATR	4 cut(s)	105, 141, 203, 430
FatI	CATG	2 cut(s)	103, 201
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	97, 267
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	75, 332
GluI	GCNGC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	26, 402
HapII	CCGG	2 cut(s)	27, 119
Hin1II	CATG	2 cut(s)	107, 205
HinfI	GANTC	2 cut(s)	8, 169
HpaII	CCGG	2 cut(s)	27, 119
HphI	GGTGA	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188III	TCNNGA	3 cut(s)	173, 296, 305
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	3 cut(s)	42, 101, 248
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 239, 248, 257
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	107, 205
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	1 cut(s)	233
MaeI	CTAG	2 cut(s)	75, 332
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	9, 209, 370
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	2 cut(s)	88, 285
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	17
MnlI	CCTC	1 cut(s)	304
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	3 cut(s)	87, 96, 366
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	2 cut(s)	27, 119
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	4 cut(s)	230, 239, 248, 257
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	107, 205
NlaIV	GGNNCC	2 cut(s)	25, 342
NmuCI	GTSAC	3 cut(s)	9, 209, 370
NspI	RCATGY	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	2 cut(s)	7, 376
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	96
PspEI	GGTNACC	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	25, 342
PspPI	GGNCC	2 cut(s)	24, 341
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	2 cut(s)	7, 376
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	87, 96, 366
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	24, 341
SchI	GAGTC	1 cut(s)	17
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	3 cut(s)	216, 244, 366
SfaNI	GCATC	1 cut(s)	233
SfcI	CTRYAG	1 cut(s)	234
SgrAI	CRCCGGYG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	331
Sse9I	AATT	2 cut(s)	88, 285
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	75, 332
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	1 cut(s)	275
TaqII	GACCGA	2 cut(s)	261, 403
TasI	AATT	2 cut(s)	88, 285
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	3 cut(s)	87, 96, 366
Tru9I	TTAA	3 cut(s)	87, 96, 366
TseFI	GTSAC	3 cut(s)	9, 209, 370
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	3 cut(s)	9, 209, 370
TspDTI	ATGAA	1 cut(s)	143
Tth111I	GACNNNGTC	2 cut(s)	7, 376
VpaK11BI	GGWCC	1 cut(s)	341
VspI	ATTAAT	1 cut(s)	96
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	2 cut(s)	75, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.