Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Forward (+)

8598533 .. 8605457

Gene Structure 6925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG100800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1653 bp

ATGGCTGCCGCCACTTCGGCCACGTCTCCTCTCTGCACGTGGCTCGTCGCCGCTTGCATGTCGGTCACGTGCGACGGGGACTACTCCGCCCGGCCGTCACGTGCCAAGTTGGGCGGCGGCCGGAGACGGAGGCTGGCGAAATGTAGTGGCAGCTACTGCTCAAGTAGTAGGGGCGGATCCAGCATTCAGGGCCTGATGACTTCTTGTTTGGCGTTTGAGCCTTGCGATGAGTACTATAGCTCTCAGGGTTTATCTTCTTTGGGCTCAAATGGGCTGTCCTCGCTGTTTGGATCCAAAACTGGGTCTTTGAATCGAAGCAGGAGGCGCTTTAATGCCCATTCTGGGGAAACCATGGCTGTTGCTGTGCAACCTACTGAAGAATTAACAAAGCAAAAGAAACCTATAACAAGACAGAGGCGAGTGGTTGTGACAGGAATGAGCGTGGTGACCCCACTTGGTCATGATGCTGATGTTTTCTACAATAATCTGCTTGAGGGTGTTAGTGGCATTAGTGAGATAGAAGCTTTTGATTGTTCCCCATTTCCTACGAAAATTGGTGGAGAGATCAAGTCCTTTTCCACTGATGGATGGGTAGCACCAAAGTTTTCCAGAAGAATGGATAAATTCATGCTTTACTTGCTTACTGCTGGAAAGAAAGCCTTGGCAGATGGTGGAATTACAGAAGAAGTCATGGAGAAAATTGATAAAACTAAATGTGGGGTGTTGATCGGTTCTGCAATGGGTGGAATGAAGATCTTCAATGATGCAATTGAAGCTTTACGGGTTTCATATAAGAAGATGAATCCTTTCTGTGTGCCTTTCGCAACTACAAATATGGGTTCTGCCATGCTCGCAATGGATCTGGGTTGGATGGGCCCAAATTATTCAATCTCTACTGCTTGTGCTACAAGCAACTTCTGCATTTTGAATTCAGCAAATCATATCATTAGAGGTGAAGCTGACATTATGCTTTCTGGTGGTTCAGATTCAGTAATGATACCTATTGGCTTGGGAGGCTTTGTGGCATGCAGAGCACTTTCACAAAGGAACAGTGATCCAACTAAAGCATCACGACCTTGGGATACTAATCGTGATGGATTTGTTATGGGGGAAGGAGCTGGAGTGTTGCTTCTAGAAGAGTTAGAACATGCTAAGAAAAGAGGTGCAACCATCTATGCAGAGTTTCTAGGTGGAAGCTTCACGTGTGATGCTTACCACATGACTGAGCCACGCCCTGATGGGGCTGGAGTTATTCAATGCATAGAGAAGGCATTAGCTCAGTCTGGCGTATCTAAGGAAGACGTCAATTACATTAATGCACATGCAACATCCACACCAGCTGGAGACCTAAAAGAGTATAATGCTCTGATGCATTGTTTTGGCCAGAATCCTGAGTTGAGAGTCAACTCTACAAAATCCATGATTGGTCACCTGCTAGGAGCAGCTGGCGCAGTCGAGGCTGTTGCAGCAGTACAGGCAATACGAACTGGATGGGTTCATCCAAATATCAATCTGGAAGACCCAGATGAGGGTGTGGATATGAAAGTGCTTGTAGGCCCAAAGAAAGAAAGACTGGACATTAAGGTGGCATTGTCTAATTCGTTTGGGTTTGGTGGCCACAACTCGTCAGTTTTGTTTGCTCCTTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

550

Amino Acids

58.65

Weight (kDa)

8.24

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	139 - 384	7e-57	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	392 - 506	1.5e-36	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1440
AatII	GACGTC	1 cut(s)	1305
Acc36I	ACCTGC	1 cut(s)	1440
AciI	CCGC	6 cut(s)	9, 51, 87, 114, 117, 174
AclWI	GGATC	6 cut(s)	171, 184, 285, 298, 867, 1049
AcoI	YGGCCR	5 cut(s)	18, 92, 118, 1381, 1615
AcsI	RAATTY	2 cut(s)	623, 928
AcuI	CTGAAG	1 cut(s)	396
AcvI	CACGTG	4 cut(s)	39, 69, 101, 1203
AcyI	GRCGYC	1 cut(s)	1302
AfaI	GTAC	2 cut(s)	233, 1473
AfiI	CCNNNNNNNGG	6 cut(s)	300, 342, 343, 1240, 1528, 1529
AflIII	ACRYGT	1 cut(s)	1202
AgsI	TTSAA	6 cut(s)	310, 760, 773, 888, 928, 1256
AjiI	CACGTC	1 cut(s)	24
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	3 cut(s)	30, 118, 1338
AlwI	GGATC	6 cut(s)	171, 184, 285, 298, 867, 1049
AlwNI	CAGNNNCTG	2 cut(s)	156, 193
AoxI	GGCC	8 cut(s)	18, 92, 118, 190, 874, 1381, 1555, 1615
ApaI	GGGCCC	1 cut(s)	878
ApeKI	GCWGC	4 cut(s)	5, 150, 1442, 1466
ApoI	RAATTY	2 cut(s)	623, 928
ArsI	GACNNNNNNTTYG	4 cut(s)	190, 222, 260, 292
AseI	ATTAAT	1 cut(s)	1314
Asp700I	GAANNNNTTC	2 cut(s)	755, 806
AspLEI	GCGC	2 cut(s)	327, 1451
AspS9I	GGNCC	4 cut(s)	190, 874, 875, 1556
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	457, 965, 1421
BaeGI	GKGCMC	1 cut(s)	878
BalI	TGGCCA	2 cut(s)	1383, 1617
BamHI	GGATCC	2 cut(s)	176, 290
BanII	GRGCYC	2 cut(s)	266, 878
BbrPI	CACGTG	4 cut(s)	39, 69, 101, 1203
BbsI	GAAGAC	2 cut(s)	1305, 1524
Bbv12I	GWGCWC	1 cut(s)	1036
BbvI	GCAGC	3 cut(s)	162, 1454, 1478
BccI	CCATC	8 cut(s)	578, 582, 662, 865, 1088, 1178, 1232, 1485
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	4 cut(s)	25, 59, 1445, 1479
BciVI	GTATCC	1 cut(s)	1075
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	3 cut(s)	30, 118, 1338
BfaI	CTAG	3 cut(s)	1133, 1187, 1436
BfmI	CTRYAG	1 cut(s)	235
BfoI	RGCGCY	1 cut(s)	328
BfuAI	ACCTGC	1 cut(s)	1440
BfuI	GTATCC	1 cut(s)	1075
BglI	GCCNNNNNGGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	8 cut(s)	6, 9, 51, 115, 118, 151, 1443, 1467
BlsI	GCNGC	8 cut(s)	7, 10, 52, 116, 119, 152, 1444, 1468
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	91
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	4 cut(s)	190, 874, 875, 1556
BmiI	GGNNCC	3 cut(s)	178, 292, 876
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	5 cut(s)	454, 754, 1076, 1198, 1359
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	2 cut(s)	1305, 1524
BpmI	CTGGAG	3 cut(s)	1140, 1266, 1362
BpuEI	CTTGAG	2 cut(s)	145, 512
BpuMI	CCSGG	1 cut(s)	91
BsaAI	YACGTR	4 cut(s)	39, 69, 101, 1203
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaHI	GRCGYC	1 cut(s)	1302
BsaI	GGTCTC	1 cut(s)	1338
BsaJI	CCNNGG	3 cut(s)	351, 660, 1076
BsaXI	ACNNNNNCTCC	4 cut(s)	1005, 1035, 1107, 1137
Bsc4I	CCNNNNNNNGG	6 cut(s)	300, 342, 343, 1240, 1528, 1529
Bse1I	ACTGG	3 cut(s)	304, 1492, 1578
Bse3DI	GCAATG	2 cut(s)	744, 861
Bse8I	GATNNNNATC	1 cut(s)	1086
BseDI	CCNNGG	3 cut(s)	351, 660, 1076
BseGI	GGATG	5 cut(s)	593, 876, 1328, 1496, 1498
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	6 cut(s)	300, 342, 343, 1240, 1528, 1529
BseMI	GCAATG	2 cut(s)	744, 861
BseMII	CTCAG	4 cut(s)	257, 1215, 1292, 1383
BseNI	ACTGG	3 cut(s)	304, 1492, 1578
BseRI	GAGGAG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	878
BseX3I	CGGCCG	2 cut(s)	92, 118
BseXI	GCAGC	3 cut(s)	162, 1454, 1478
BsgI	GTGCAG	1 cut(s)	19
Bsh1285I	CGRYCG	2 cut(s)	95, 121
BshFI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1383, 1557, 1617
BsiEI	CGRYCG	2 cut(s)	95, 121
BsiHKAI	GWGCWC	1 cut(s)	1036
BsiSI	CCGG	2 cut(s)	91, 121
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	6 cut(s)	300, 342, 343, 1240, 1528, 1529
BsmAI	GTCTC	3 cut(s)	30, 118, 1338
BsmBI	CGTCTC	2 cut(s)	30, 118
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1383, 1557, 1617
Bso31I	GGTCTC	1 cut(s)	1338
Bsp120I	GGGCCC	1 cut(s)	874
Bsp1286I	GDGCHC	3 cut(s)	266, 878, 1036
Bsp143I	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	6 cut(s)	9, 51, 87, 114, 117, 174
BspANI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1383, 1557, 1617
BspCNI	CTCAG	4 cut(s)	256, 1216, 1291, 1384
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	3 cut(s)	178, 292, 876
BspMI	ACCTGC	1 cut(s)	1440
BspPI	GGATC	6 cut(s)	171, 184, 285, 298, 867, 1049
BspTNI	GGTCTC	1 cut(s)	1338
BsrDI	GCAATG	2 cut(s)	744, 861
BsrI	ACTGG	3 cut(s)	304, 1492, 1578
BssECI	CCNNGG	3 cut(s)	351, 660, 1076
BssMI	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
BssNI	GRCGYC	1 cut(s)	1302
BssT1I	CCWWGG	3 cut(s)	351, 660, 1076
Bst4CI	ACNGT	1 cut(s)	1052
Bst6I	CTCTTC	1 cut(s)	1131
BstACI	GRCGYC	1 cut(s)	1302
BstAPI	GCANNNNNTGC	2 cut(s)	156, 918
BstBAI	YACGTR	4 cut(s)	39, 69, 101, 1203
BstC8I	GCNNGC	5 cut(s)	55, 135, 852, 1027, 1447
BstDEI	CTNAG	6 cut(s)	243, 1152, 1224, 1278, 1293, 1392
BstDSI	CCRYGG	1 cut(s)	351
BstEII	GGTNACC	2 cut(s)	445, 1427
BstF5I	GGATG	5 cut(s)	593, 876, 1328, 1496, 1498
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	2 cut(s)	327, 1451
BstKTI	GATC	7 cut(s)	179, 293, 567, 729, 756, 862, 1057
BstMAI	GTCTC	3 cut(s)	30, 118, 1338
BstMBI	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
BstMCI	CGRYCG	2 cut(s)	95, 121
BstNSI	RCATGY	4 cut(s)	61, 1029, 1151, 1325
BstPI	GGTNACC	2 cut(s)	445, 1427
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	878
BstV1I	GCAGC	3 cut(s)	162, 1454, 1478
BstV2I	GAAGAC	2 cut(s)	1305, 1524
BstX2I	RGATCY	4 cut(s)	176, 290, 753, 859
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	4 cut(s)	176, 290, 753, 859
BstZI	CGGCCG	2 cut(s)	92, 118
BsuI	GTATCC	1 cut(s)	1075
BsuRI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1383, 1557, 1617
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	5 cut(s)	593, 876, 1328, 1496, 1498
BtsIMutI	CAGTG	2 cut(s)	579, 1057
BveI	ACCTGC	1 cut(s)	1440
Cac8I	GCNNGC	5 cut(s)	55, 135, 852, 1027, 1447
CaiI	CAGNNNCTG	2 cut(s)	156, 193
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	2 cut(s)	327, 1451
Cfr13I	GGNCC	4 cut(s)	190, 874, 875, 1556
Csp6I	GTAC	2 cut(s)	232, 1472
CviQI	GTAC	2 cut(s)	232, 1472
DdeI	CTNAG	6 cut(s)	243, 1152, 1224, 1278, 1293, 1392
DpnI	GATC	7 cut(s)	178, 292, 566, 728, 755, 861, 1056
DpnII	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
EaeI	YGGCCR	5 cut(s)	18, 92, 118, 1381, 1615
EagI	CGGCCG	2 cut(s)	92, 118
Eam1104I	CTCTTC	1 cut(s)	1131
EarI	CTCTTC	1 cut(s)	1131
EciI	GGCGGA	2 cut(s)	76, 189
EclXI	CGGCCG	2 cut(s)	92, 118
Eco130I	CCWWGG	3 cut(s)	351, 660, 1076
Eco24I	GRGCYC	2 cut(s)	266, 878
Eco31I	GGTCTC	1 cut(s)	1338
Eco52I	CGGCCG	2 cut(s)	92, 118
Eco57I	CTGAAG	1 cut(s)	396
Eco72I	CACGTG	4 cut(s)	39, 69, 101, 1203
Eco91I	GGTNACC	2 cut(s)	445, 1427
EcoO109I	RGGNCCY	1 cut(s)	190
EcoO65I	GGTNACC	2 cut(s)	445, 1427
EcoRI	GAATTC	1 cut(s)	928
EcoT14I	CCWWGG	3 cut(s)	351, 660, 1076
EcoT22I	ATGCAT	2 cut(s)	1262, 1374
EcoT38I	GRGCYC	2 cut(s)	266, 878
ErhI	CCWWGG	3 cut(s)	351, 660, 1076
Esp3I	CGTCTC	2 cut(s)	30, 118
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	92
Fnu4HI	GCNGC	8 cut(s)	6, 9, 51, 115, 118, 151, 1443, 1467
FokI	GGATG	5 cut(s)	600, 883, 1315, 1485, 1503
FriOI	GRGCYC	2 cut(s)	266, 878
Fsp4HI	GCNGC	8 cut(s)	6, 9, 51, 115, 118, 151, 1443, 1467
FspBI	CTAG	3 cut(s)	1133, 1187, 1436
GlaI	GCGC	2 cut(s)	326, 1450
GluI	GCNGC	8 cut(s)	6, 9, 51, 115, 118, 151, 1443, 1467
GsuI	CTGGAG	3 cut(s)	1140, 1266, 1362
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1383, 1557, 1617
HapII	CCGG	2 cut(s)	91, 121
HhaI	GCGC	2 cut(s)	327, 1451
Hin1I	GRCGYC	1 cut(s)	1302
Hin6I	GCGC	2 cut(s)	325, 1449
HinP1I	GCGC	2 cut(s)	325, 1449
HincII	GTYRAC	1 cut(s)	1405
HindII	GTYRAC	1 cut(s)	1405
HindIII	AAGCTT	3 cut(s)	522, 774, 1195
HinfI	GANTC	5 cut(s)	310, 802, 986, 1387, 1401
HpaII	CCGG	2 cut(s)	91, 121
HphI	GGTGA	3 cut(s)	457, 965, 1421
Hpy166II	GTNNAC	1 cut(s)	1405
Hpy188I	TCNGA	2 cut(s)	985, 1368
Hpy188III	TCNNGA	7 cut(s)	461, 609, 1071, 1091, 1133, 1391, 1514
Hpy8I	GTNNAC	1 cut(s)	1405
Hpy99I	CGWCG	2 cut(s)	50, 77
HpyAV	CCTTC	2 cut(s)	1106, 1261
HpyCH4III	ACNGT	1 cut(s)	1052
HpyCH4IV	ACGT	6 cut(s)	23, 38, 68, 100, 1202, 1302
HpyF3I	CTNAG	6 cut(s)	243, 1152, 1224, 1278, 1293, 1392
HpySE526I	ACGT	6 cut(s)	23, 38, 68, 100, 1202, 1302
Hsp92I	GRCGYC	1 cut(s)	1302
HspAI	GCGC	2 cut(s)	325, 1449
Kzo9I	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
LmnI	GCTCC	3 cut(s)	1115, 1439, 1645
Lsp1109I	GCAGC	3 cut(s)	162, 1454, 1478
LweI	GCATC	5 cut(s)	454, 754, 1076, 1198, 1359
MaeI	CTAG	3 cut(s)	1133, 1187, 1436
MaeII	ACGT	6 cut(s)	23, 38, 68, 100, 1202, 1302
MaeIII	GTNAC	5 cut(s)	64, 96, 427, 445, 1427
MalI	GATC	7 cut(s)	178, 292, 566, 728, 755, 861, 1056
MboI	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	4 cut(s)	176, 290, 753, 859
MhlI	GDGCHC	3 cut(s)	266, 878, 1036
MlsI	TGGCCA	2 cut(s)	1383, 1617
MluNI	TGGCCA	2 cut(s)	1383, 1617
MlyI	GAGTC	1 cut(s)	1410
MmeI	TCCRAC	2 cut(s)	848, 1082
Mox20I	TGGCCA	2 cut(s)	1383, 1617
Mph1103I	ATGCAT	2 cut(s)	1262, 1374
MroXI	GAANNNNTTC	2 cut(s)	755, 806
MscI	TGGCCA	2 cut(s)	1383, 1617
MseI	TTAA	4 cut(s)	330, 383, 1314, 1581
MslI	CAYNNNNRTG	1 cut(s)	1583
Msp20I	TGGCCA	2 cut(s)	1383, 1617
MspA1I	CMGCKG	2 cut(s)	1340, 1445
MspI	CCGG	2 cut(s)	91, 121
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
NlaIV	GGNNCC	3 cut(s)	178, 292, 876
NmuCI	GTSAC	5 cut(s)	64, 96, 427, 445, 1427
NsiI	ATGCAT	2 cut(s)	1262, 1374
NspI	RCATGY	4 cut(s)	61, 1029, 1151, 1325
PaeI	GCATGC	1 cut(s)	1029
PagI	TCATGA	1 cut(s)	460
PaqCI	CACCTGC	1 cut(s)	1440
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	2 cut(s)	755, 806
PfeI	GAWTC	4 cut(s)	310, 802, 986, 1387
PkrI	GCNGC	8 cut(s)	7, 10, 52, 116, 119, 152, 1444, 1468
PleI	GAGTC	1 cut(s)	1409
PmaCI	CACGTG	4 cut(s)	39, 69, 101, 1203
PmlI	CACGTG	4 cut(s)	39, 69, 101, 1203
PpsI	GAGTC	1 cut(s)	1409
Ppu21I	YACGTR	4 cut(s)	39, 69, 101, 1203
PshBI	ATTAAT	1 cut(s)	1314
PspCI	CACGTG	4 cut(s)	39, 69, 101, 1203
PspEI	GGTNACC	2 cut(s)	445, 1427
PspN4I	GGNNCC	3 cut(s)	178, 292, 876
PspOMI	GGGCCC	1 cut(s)	874
PspPI	GGNCC	4 cut(s)	190, 874, 875, 1556
PstNI	CAGNNNCTG	2 cut(s)	156, 193
PsuI	RGATCY	4 cut(s)	176, 290, 753, 859
PvuII	CAGCTG	2 cut(s)	1340, 1445
RsaI	GTAC	2 cut(s)	233, 1473
RsaNI	GTAC	2 cut(s)	232, 1472
RseI	CAYNNNNRTG	1 cut(s)	1583
SaqAI	TTAA	4 cut(s)	330, 383, 1314, 1581
SatI	GCNGC	8 cut(s)	6, 9, 51, 115, 118, 151, 1443, 1467
Sau3AI	GATC	7 cut(s)	176, 290, 564, 726, 753, 859, 1054
Sau96I	GGNCC	4 cut(s)	190, 874, 875, 1556
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	1410
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	3 cut(s)	266, 878, 1036
SfaNI	GCATC	5 cut(s)	454, 754, 1076, 1198, 1359
SfcI	CTRYAG	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	1583
SmlI	CTYRAG	2 cut(s)	160, 491
SmoI	CTYRAG	2 cut(s)	160, 491
SphI	GCATGC	1 cut(s)	1029
SsiI	CCGC	6 cut(s)	9, 51, 87, 114, 117, 174
SspMI	CTAG	3 cut(s)	1133, 1187, 1436
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	3 cut(s)	351, 660, 1076
TaaI	ACNGT	1 cut(s)	1052
TaiI	ACGT	6 cut(s)	26, 41, 71, 103, 1205, 1305
TaqI	TCGA	2 cut(s)	313, 1455
TaqII	GACCGA	1 cut(s)	52
TatI	WGTACW	2 cut(s)	231, 1471
TauI	GCSGC	4 cut(s)	11, 53, 117, 120
TfiI	GAWTC	4 cut(s)	310, 802, 986, 1387
Tru1I	TTAA	4 cut(s)	330, 383, 1314, 1581
Tru9I	TTAA	4 cut(s)	330, 383, 1314, 1581
TscAI	CASTG	2 cut(s)	586, 1057
TseFI	GTSAC	5 cut(s)	64, 96, 427, 445, 1427
TseI	GCWGC	4 cut(s)	5, 150, 1442, 1466
Tsp45I	GTSAC	5 cut(s)	64, 96, 427, 445, 1427
TspDTI	ATGAA	6 cut(s)	616, 764, 777, 815, 1487, 1556
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	586, 1057
VspI	ATTAAT	1 cut(s)	1314
XapI	RAATTY	2 cut(s)	623, 928
XbaI	TCTAGA	1 cut(s)	1132
XceI	RCATGY	4 cut(s)	61, 1029, 1151, 1325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmnI	GAANNNNTTC	2 cut(s)	755, 806
XspI	CTAG	3 cut(s)	1133, 1187, 1436
ZraI	GACGTC	1 cut(s)	1303
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	2 cut(s)	1262, 1374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.