Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Forward (+)

14034878 .. 14036148

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g19630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCTGCCTCCTCTGTTGCATCTCCGCTCTGCACGTGGCTGGTGGCCGCTTGCATGTCGGTCACGTGCGACAGGGACTGCTCCGCCAGGCCATCTATGCTCAGCTCCTCCCGGAGGCGGCCGAAATGCGCCGGAAGAAGGAGGCTGCCGTCCAAGTGTAGTAGCTTTAGTGTCGAATTCCAGAAGAGCCTGATTTCTGCGTTCAGTGGATCGAGCATTCAGGGCCTCATGAGCTCCTGCTTGGCTTTCGAGCCCTGCGATGAGTACAACAGCTCAAGGGGTTTATCTTCTTTGGGATGCAATGGGCTTTCATCACTGTTTGGATCCAATCGAAGCTGGGCATTCCTAGAGGAAAAAGTTTTCCATGGGAAACCATGGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

128

Amino Acids

13.74

Weight (kDa)

9.15

Isoelectric Point (pI)

79.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	28
AciI	CCGC	4 cut(s)	26, 48, 84, 118
AclWI	GGATC	3 cut(s)	217, 318, 331
AcoI	YGGCCR	2 cut(s)	45, 119
AcsI	RAATTY	1 cut(s)	176
AcvI	CACGTG	2 cut(s)	36, 66
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	114, 117, 138
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	5 cut(s)	105, 165, 234, 273, 336
AluI	AGCT	5 cut(s)	105, 165, 234, 273, 336
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	217, 318, 331
AlwNI	CAGNNNCTG	1 cut(s)	78
AoxI	GGCC	4 cut(s)	45, 89, 119, 223
ApeKI	GCWGC	2 cut(s)	5, 145
ApoI	RAATTY	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	112
BamHI	GGATCC	1 cut(s)	323
BanII	GRGCYC	2 cut(s)	236, 255
BbrPI	CACGTG	2 cut(s)	36, 66
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	100
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	88
BcnI	CCSGG	1 cut(s)	112
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	380
BisI	GCNGC	4 cut(s)	6, 48, 119, 146
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	4 cut(s)	7, 49, 120, 147
Bme1390I	CCNGG	2 cut(s)	88, 112
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	88, 112
BmsI	GCATC	2 cut(s)	29, 287
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	112
BsaAI	YACGTR	2 cut(s)	36, 66
BsaJI	CCNNGG	2 cut(s)	364, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 117, 138
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	2 cut(s)	364, 374
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	3 cut(s)	114, 117, 138
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	115
BseRI	GAGGAG	1 cut(s)	97
BseX3I	CGGCCG	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	132
BseYI	CCCAGC	1 cut(s)	336
BsgI	GTGCAG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	4 cut(s)	47, 91, 121, 225
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	112, 132
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	114, 117, 138
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	2 cut(s)	216, 341
BsnI	GGCC	4 cut(s)	47, 91, 121, 225
Bsp1286I	GDGCHC	2 cut(s)	236, 255
Bsp143I	GATC	2 cut(s)	209, 323
Bsp1720I	GCTNAGC	1 cut(s)	101
Bsp19I	CCATGG	2 cut(s)	364, 374
BspACI	CCGC	4 cut(s)	26, 48, 84, 118
BspANI	GGCC	4 cut(s)	47, 91, 121, 225
BspCNI	CTCAG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	3 cut(s)	217, 318, 331
BspQI	GCTCTTC	1 cut(s)	179
BsrBI	CCGCTC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	364, 374
BssMI	GATC	2 cut(s)	209, 323
BssT1I	CCWWGG	2 cut(s)	364, 374
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	179
BstBAI	YACGTR	2 cut(s)	36, 66
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	101
BstDSI	CCRYGG	2 cut(s)	364, 374
BstENI	CCTNNNNNAGG	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	212, 326
BstMBI	GATC	2 cut(s)	209, 323
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	97, 222, 231
BstNI	CCWGG	1 cut(s)	88
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	86, 110
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	132
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	119
BsuRI	GGCC	4 cut(s)	47, 91, 121, 225
BtgI	CCRYGG	2 cut(s)	364, 374
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	211, 314
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	78
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	4 cut(s)	55, 229, 365, 375
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	211, 325
DpnII	GATC	2 cut(s)	209, 323
EaeI	YGGCCR	2 cut(s)	45, 119
EagI	CGGCCG	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	364, 374
Eco24I	GRGCYC	2 cut(s)	236, 255
Eco52I	CGGCCG	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	234
Eco72I	CACGTG	2 cut(s)	36, 66
EcoICRI	GAGCTC	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	364, 374
EcoT38I	GRGCYC	2 cut(s)	236, 255
ErhI	CCWWGG	2 cut(s)	364, 374
FaeI	CATG	4 cut(s)	58, 232, 368, 378
FaiI	YATR	5 cut(s)	56, 98, 230, 366, 376
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	4 cut(s)	54, 228, 364, 374
Fnu4HI	GCNGC	4 cut(s)	6, 48, 119, 146
FokI	GGATG	1 cut(s)	309
FriOI	GRGCYC	2 cut(s)	236, 255
Fsp4HI	GCNGC	4 cut(s)	6, 48, 119, 146
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	6, 48, 119, 146
GsaI	CCCAGC	1 cut(s)	340
HaeIII	GGCC	4 cut(s)	47, 91, 121, 225
HapII	CCGG	2 cut(s)	112, 132
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	58, 232, 368, 378
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HpaII	CCGG	2 cut(s)	112, 132
Hpy188III	TCNNGA	2 cut(s)	181, 229
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	318
HpyCH4IV	ACGT	2 cut(s)	35, 65
HpyCH4V	TGCA	4 cut(s)	20, 33, 54, 300
HpyF10VI	GCNNNNNNNGC	3 cut(s)	97, 222, 231
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	35, 65
Hsp92II	CATG	4 cut(s)	58, 232, 368, 378
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	209, 323
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	3 cut(s)	86, 110, 239
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	2 cut(s)	29, 287
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	35, 65
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	2 cut(s)	211, 325
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	2 cut(s)	209, 323
MboII	GAAGA	3 cut(s)	147, 196, 279
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	2 cut(s)	236, 255
MluCI	AATT	1 cut(s)	176
MnlI	CCTC	7 cut(s)	19, 22, 108, 118, 135, 236, 343
MspI	CCGG	2 cut(s)	112, 132
MspR9I	CCNGG	2 cut(s)	88, 112
Mva1269I	GAATGC	2 cut(s)	216, 341
MvaI	CCWGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	97, 222, 231
NciI	CCSGG	1 cut(s)	112
NcoI	CCATGG	2 cut(s)	364, 374
NdeII	GATC	2 cut(s)	209, 323
NlaIII	CATG	4 cut(s)	58, 232, 368, 378
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	61
NspI	RCATGY	1 cut(s)	58
PagI	TCATGA	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	2 cut(s)	216, 341
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	4 cut(s)	7, 49, 120, 147
PmaCI	CACGTG	2 cut(s)	36, 66
PmlI	CACGTG	2 cut(s)	36, 66
Ppu21I	YACGTR	2 cut(s)	36, 66
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	86
PspCI	CACGTG	2 cut(s)	36, 66
PspFI	CCCAGC	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	179
SatI	GCNGC	4 cut(s)	6, 48, 119, 146
Sau3AI	GATC	2 cut(s)	209, 323
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	2 cut(s)	88, 112
SduI	GDGCHC	2 cut(s)	236, 255
SetI	ASST	7 cut(s)	38, 68, 107, 167, 236, 275, 338
SfaNI	GCATC	2 cut(s)	29, 287
SfcI	CTRYAG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	4 cut(s)	26, 48, 84, 118
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	86, 110
StyI	CCWWGG	2 cut(s)	364, 374
TaaI	ACNGT	1 cut(s)	318
TaiI	ACGT	2 cut(s)	38, 68
TaqI	TCGA	4 cut(s)	174, 212, 249, 331
TaqII	GACCGA	1 cut(s)	49
TasI	AATT	1 cut(s)	176
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	50, 121
TscAI	CASTG	2 cut(s)	211, 321
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	5, 145
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	2 cut(s)	211, 321
XagI	CCTNNNNNAGG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	176
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.