Prupe.3G036900_v2.0.a1

3-oxoacyl- acyl-carrier-protein synthase II

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
2655507 .. 2659489
3983 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G036900.1

Sequence Viewer

Length: 1668 bp
ATGGCTTCTTCGTCTACGGCCTCACCATTCTGTACATGGCTACTTGCTGCTTGCATATCTTCTCCATATGAGAAAGACCACCCTATGAGGTCCTCTATATTTCAGTCTCCGAAGAGACTGAGTCAGTGGGCCAGAAGAAAGAAGCTCATTTCGAAATGCAGCTATGTTGGTGGGGCAGATTTTGCTAGCAATTTGAGTTCCTCATTCTCTGTATCTGGCATTCATCACTTGATGAGTTCTTTCCTGGCTTTTGAGCCCTGCTATGATTCTAAAGTGCTGTATGAATCTTTGGCTTTCTTTGGGTCAAAGAGGTCAAGGACTAGAAGGCAAAGGCAAATGAATGGTGCTGTTCACTCTGGCATAACTATGGCTGTGCCTGTGCAAAGAGCAGAACAAGGCACAACAAAGAAAAAACCTCTAACGAAACAAAGGCAGGTTGTTGTGACAGGATTGGGTGTGGTAACCCCTCTTGGACATGATCCAGATGTCTTCTACAATAGTCTTCTTGAAGGTGTCAGTGGCATAAGTGAGATAGGGGCTTTTGACTGTGCTCGATTTCCTACGAAAATTGCTGGAGAAATAAAGTCTTTCTCAACAGATGGATGGGTCTCGCCAAAGCTTTCTAAGAAGGCAGACAAATTTATGCTTTACTTGATCAGTGCAGGAAAAAAAGCATTGGCAGATGGTGGGATTACAGAAGAAGTTATGGACAATTTAGATAAAAGAAGATGCGGGGTCATAATTGGCTCTGCACTGGGAGGAATGAAAGTTTTTAATGATGCAATAGAAGCATTGAGGATTTCGTACAAGAAGATGAACCCCTTCTGTATACCTTTCGCAACAACTAACATGGGTTCAGCTATACTAGCAATGGATTTGGGTTGGATGGGCCCGAACTACTCAATATCTACAGCTTGTGCCACCAGCAACTTTTGTATACTGAATGCTGCATATCATATTATGAGAGGTGAAACTGACATGATGCTTTGTGGTGGATCTGAAGCAGCAATTATCCCCATAGGCTTGGGAGGTTTTTCAGCATGCAAGGTTCTGTCGCAAAGGAATAGTGAACCAACTAAAGCTTCATGCCCTTGGGATATTAATCGTGATGGTTTTGTTATTGGAGAAGGAGCTGGGGTTTTGCTCTTGGAAGAGCTAGAACATGCTAAGAAAAGAGGTGCAAATATATATGCTGAGTTTCTAGGTGGAAGCTTCACTTGTGATGCATATCACATGACTGAGCCTCATCCTGATGGAACAGGTGTTGCTCTTTGCATAGAGAAAGCCTTGGATCAATCTGGGGTCTGCAGAGAAGATGTGAATTACATAAATGCATATGCTGCATCGACACCAACAGGTGATCTGAAAGAATATCGAGCTATAATCCGCTGTTTTGGAAAGAATCCAGAGCTAAGAGTGAACTCCACAAAATCCATGATTGGTCACCTTCTAGGAGCCTCAGGTGCTGTGGAAGCTGTTGCAACAATCAAGGCTATACAGACAGGATGCATCCATCCAAACATCAATCTTGAGAACCCAGATGAAAGTGTGGATATGAATGTGCTTGTTGGCCCCAAGAAGGAAAAATTGGACATAAAAGTTGCAATGTCTAACGCACTCGGATTTGGTGGACACAACTCTTCTATCTTATTTGCACCCTACAAATGA

Protein Analysis

556

Amino Acids

59.83

Weight (kDa)

8.69

Isoelectric Point (pI)

43.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 424
AccI GTMKAC 3 cut(s) 14, 829, 937
AciI CCGC 2 cut(s) 732, 1387
AclWI GGATC 3 cut(s) 473, 1003, 1299
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 1 cut(s) 1020
AfaI GTAC 2 cut(s) 34, 806
AfiI CCNNNNNNNGG 1 cut(s) 1579
AgsI TTSAA 1 cut(s) 509
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 4 cut(s) 1066, 1098, 1571, 1603
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 3 cut(s) 109, 111, 613
AlwI GGATC 3 cut(s) 473, 1003, 1299
AlwNI CAGNNNCTG 1 cut(s) 1466
AoxI GGCC 4 cut(s) 18, 129, 889, 1570
ApaI GGGCCC 1 cut(s) 893
ApeKI GCWGC 5 cut(s) 47, 159, 947, 1004, 1340
ApoI RAATTY 1 cut(s) 638
AseI ATTAAT 1 cut(s) 1101
Asp700I GAANNNNTTC 1 cut(s) 821
AspS9I GGNCC 5 cut(s) 90, 129, 889, 890, 1571
AsuHPI GGTGA 4 cut(s) 15, 980, 1370, 1436
AsuII TTCGAA 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 185
AvaII GGWCC 1 cut(s) 90
AxyI CCTNAGG 1 cut(s) 1459
BaeGI GKGCMC 1 cut(s) 893
BanII GRGCYC 2 cut(s) 258, 893
BbsI GAAGAC 2 cut(s) 481, 494
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 5 cut(s) 34, 171, 934, 1016, 1327
BccI CCATC 7 cut(s) 593, 597, 677, 880, 1103, 1247, 1521
BceAI ACGGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 245
BclI TGATCA 1 cut(s) 654
BcoDI GTCTC 3 cut(s) 109, 111, 613
BfaI CTAG 6 cut(s) 186, 321, 866, 1157, 1202, 1451
BfmI CTRYAG 2 cut(s) 909, 1306
BfuAI ACCTGC 1 cut(s) 424
BisI GCNGC 5 cut(s) 48, 160, 948, 1005, 1341
BlsI GCNGC 5 cut(s) 49, 161, 949, 1006, 1342
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 5 cut(s) 90, 129, 889, 890, 1571
BmiI GGNNCC 3 cut(s) 891, 1456, 1573
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 764
BmsI GCATC 7 cut(s) 719, 769, 972, 1213, 1352, 1496, 1518
BmtI GCTAGC 1 cut(s) 189
BmuI ACTGGG 1 cut(s) 764
BpiI GAAGAC 2 cut(s) 481, 494
BpmI CTGGAG 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 1550
BsaBI GATNNNNATC 2 cut(s) 1101, 1227
BsaI GGTCTC 1 cut(s) 613
BsaJI CCNNGG 2 cut(s) 1091, 1287
BsaXI ACNNNNNCTCC 2 cut(s) 1122, 1152
Bsc4I CCNNNNNNNGG 1 cut(s) 1579
Bse1I ACTGG 1 cut(s) 759
Bse21I CCTNAGG 1 cut(s) 1459
Bse3DI GCAATG 2 cut(s) 876, 1611
Bse8I GATNNNNATC 2 cut(s) 1101, 1227
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 1091, 1287
BseGI GGATG 6 cut(s) 608, 891, 1246, 1509, 1511, 1513
BseJI GATNNNNATC 2 cut(s) 1101, 1227
BseLI CCNNNNNNNGG 1 cut(s) 1579
BseMI GCAATG 2 cut(s) 876, 1611
BseMII CTCAG 4 cut(s) 110, 1185, 1230, 1473
BseNI ACTGG 1 cut(s) 759
BseSI GKGCMC 1 cut(s) 893
BseXI GCAGC 5 cut(s) 34, 171, 934, 1016, 1327
BseYI CCCAGC 1 cut(s) 1133
BsgI GTGCAG 2 cut(s) 681, 735
BshFI GGCC 4 cut(s) 20, 131, 891, 1572
BsiHKAI GWGCWC 1 cut(s) 553
BslI CCNNNNNNNGG 1 cut(s) 1579
BsmAI GTCTC 3 cut(s) 109, 111, 613
BsmI GAATGC 2 cut(s) 219, 949
BsnI GGCC 4 cut(s) 20, 131, 891, 1572
Bso31I GGTCTC 1 cut(s) 613
Bsp119I TTCGAA 1 cut(s) 152
Bsp120I GGGCCC 1 cut(s) 889
Bsp1286I GDGCHC 3 cut(s) 258, 553, 893
Bsp1407I TGTACA 1 cut(s) 32
Bsp143I GATC 5 cut(s) 478, 654, 995, 1291, 1360
BspACI CCGC 2 cut(s) 732, 1387
BspANI GGCC 4 cut(s) 20, 131, 891, 1572
BspCNI CTCAG 4 cut(s) 111, 1186, 1231, 1472
BspLI GGNNCC 3 cut(s) 891, 1456, 1573
BspMAI CTGCAG 1 cut(s) 1310
BspMI ACCTGC 1 cut(s) 424
BspOI GCTAGC 1 cut(s) 189
BspPI GGATC 3 cut(s) 473, 1003, 1299
BspQI GCTCTTC 1 cut(s) 1146
BspT104I TTCGAA 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 613
BsrDI GCAATG 2 cut(s) 876, 1611
BsrGI TGTACA 1 cut(s) 32
BsrI ACTGG 1 cut(s) 759
BssECI CCNNGG 2 cut(s) 1091, 1287
BssMI GATC 5 cut(s) 478, 654, 995, 1291, 1360
BssNAI GTATAC 2 cut(s) 830, 938
BssT1I CCWWGG 2 cut(s) 1091, 1287
Bst1107I GTATAC 2 cut(s) 830, 938
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 548
Bst6I CTCTTC 3 cut(s) 107, 1146, 1645
BstAPI GCANNNNNTGC 2 cut(s) 182, 1340
BstAUI TGTACA 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 152
BstC8I GCNNGC 3 cut(s) 52, 187, 1042
BstDEI CTNAG 7 cut(s) 119, 624, 1167, 1194, 1239, 1412, 1459
BstEII GGTNACC 2 cut(s) 460, 1442
BstF5I GGATG 6 cut(s) 608, 891, 1246, 1509, 1511, 1513
BstKTI GATC 5 cut(s) 481, 657, 998, 1294, 1363
BstMAI GTCTC 3 cut(s) 109, 111, 613
BstMBI GATC 5 cut(s) 478, 654, 995, 1291, 1360
BstMWI GCNNNNNNNGC 6 cut(s) 182, 788, 866, 1340, 1463, 1472
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 1044, 1166
BstPI GGTNACC 2 cut(s) 460, 1442
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 2 cut(s) 909, 1306
BstSLI GKGCMC 1 cut(s) 893
BstV1I GCAGC 5 cut(s) 34, 171, 934, 1016, 1327
BstV2I GAAGAC 2 cut(s) 481, 494
BstX2I RGATCY 1 cut(s) 995
BstXI CCANNNNNNTGG 1 cut(s) 1024
BstYI RGATCY 1 cut(s) 995
BstZ17I GTATAC 2 cut(s) 830, 938
Bsu36I CCTNAGG 1 cut(s) 1459
BsuRI GGCC 4 cut(s) 20, 131, 891, 1572
BtsCI GGATG 6 cut(s) 608, 891, 1246, 1509, 1511, 1513
BtsIMutI CAGTG 4 cut(s) 131, 523, 664, 752
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 3 cut(s) 52, 187, 1042
CaiI CAGNNNCTG 1 cut(s) 1466
Cfr13I GGNCC 5 cut(s) 90, 129, 889, 890, 1571
Csp6I GTAC 2 cut(s) 33, 805
CviAII CATG 9 cut(s) 36, 476, 850, 979, 1041, 1086, 1163, 1234, 1435
CviQI GTAC 2 cut(s) 33, 805
DdeI CTNAG 7 cut(s) 119, 624, 1167, 1194, 1239, 1412, 1459
DpnI GATC 5 cut(s) 480, 656, 997, 1293, 1362
DpnII GATC 5 cut(s) 478, 654, 995, 1291, 1360
Eam1104I CTCTTC 3 cut(s) 107, 1146, 1645
EarI CTCTTC 3 cut(s) 107, 1146, 1645
Eco130I CCWWGG 2 cut(s) 1091, 1287
Eco24I GRGCYC 2 cut(s) 258, 893
Eco31I GGTCTC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 1020
Eco81I CCTNAGG 1 cut(s) 1459
Eco91I GGTNACC 2 cut(s) 460, 1442
EcoO109I RGGNCCY 1 cut(s) 90
EcoO65I GGTNACC 2 cut(s) 460, 1442
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 2 cut(s) 1091, 1287
EcoT22I ATGCAT 3 cut(s) 1228, 1336, 1511
EcoT38I GRGCYC 2 cut(s) 258, 893
ErhI CCWWGG 2 cut(s) 1091, 1287
FaeI CATG 9 cut(s) 39, 479, 853, 982, 1044, 1089, 1166, 1237, 1438
FalI AAGNNNNNCTT 2 cut(s) 1201, 1233
FatI CATG 9 cut(s) 35, 475, 849, 978, 1040, 1085, 1162, 1233, 1434
FauI CCCGC 1 cut(s) 725
FauNDI CATATG 2 cut(s) 67, 1336
FbaI TGATCA 1 cut(s) 654
FblI GTMKAC 3 cut(s) 14, 829, 937
Fnu4HI GCNGC 5 cut(s) 48, 160, 948, 1005, 1341
FokI GGATG 6 cut(s) 615, 898, 1233, 1496, 1500, 1518
FriOI GRGCYC 2 cut(s) 258, 893
Fsp4HI GCNGC 5 cut(s) 48, 160, 948, 1005, 1341
FspBI CTAG 6 cut(s) 186, 321, 866, 1157, 1202, 1451
GluI GCNGC 5 cut(s) 48, 160, 948, 1005, 1341
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 4 cut(s) 20, 131, 891, 1572
Hin1II CATG 9 cut(s) 39, 479, 853, 982, 1044, 1089, 1166, 1237, 1438
HindIII AAGCTT 3 cut(s) 617, 1080, 1210
HinfI GANTC 4 cut(s) 121, 266, 284, 1402
HphI GGTGA 4 cut(s) 15, 980, 1370, 1436
Hpy166II GTNNAC 7 cut(s) 15, 352, 830, 938, 1070, 1420, 1631
Hpy188I TCNGA 4 cut(s) 111, 1000, 1365, 1622
Hpy188III TCNNGA 6 cut(s) 482, 506, 1106, 1250, 1406, 1529
Hpy8I GTNNAC 7 cut(s) 15, 352, 830, 938, 1070, 1420, 1631
HpyAV CCTTC 7 cut(s) 318, 503, 622, 832, 1121, 1457, 1573
HpyCH4III ACNGT 1 cut(s) 548
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 788, 866, 1340, 1463, 1472
HpyF3I CTNAG 7 cut(s) 119, 624, 1167, 1194, 1239, 1412, 1459
Hsp92II CATG 9 cut(s) 39, 479, 853, 982, 1044, 1089, 1166, 1237, 1438
Ksp22I TGATCA 1 cut(s) 654
Kzo9I GATC 5 cut(s) 478, 654, 995, 1291, 1360
LguI GCTCTTC 1 cut(s) 1146
LmnI GCTCC 2 cut(s) 1130, 1454
Lsp1109I GCAGC 5 cut(s) 34, 171, 934, 1016, 1327
LweI GCATC 7 cut(s) 719, 769, 972, 1213, 1352, 1496, 1518
MaeI CTAG 6 cut(s) 186, 321, 866, 1157, 1202, 1451
MaeIII GTNAC 3 cut(s) 442, 460, 1442
MalI GATC 5 cut(s) 480, 656, 997, 1293, 1362
MboI GATC 5 cut(s) 478, 654, 995, 1291, 1360
MflI RGATCY 1 cut(s) 995
MhlI GDGCHC 3 cut(s) 258, 553, 893
MluCI AATT 8 cut(s) 190, 567, 638, 712, 741, 1008, 1321, 1586
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 863
Mph1103I ATGCAT 3 cut(s) 1228, 1336, 1511
MroXI GAANNNNTTC 1 cut(s) 821
MseI TTAA 2 cut(s) 774, 1101
MslI CAYNNNNRTG 2 cut(s) 365, 1251
MspA1I CMGCKG 1 cut(s) 1389
MspR9I CCNGG 1 cut(s) 245
Mva1269I GAATGC 2 cut(s) 219, 949
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 6 cut(s) 182, 788, 866, 1340, 1463, 1472
NdeI CATATG 2 cut(s) 67, 1336
NdeII GATC 5 cut(s) 478, 654, 995, 1291, 1360
NheI GCTAGC 1 cut(s) 185
NlaIII CATG 9 cut(s) 39, 479, 853, 982, 1044, 1089, 1166, 1237, 1438
NlaIV GGNNCC 3 cut(s) 891, 1456, 1573
NmuCI GTSAC 2 cut(s) 442, 1442
NsiI ATGCAT 3 cut(s) 1228, 1336, 1511
NspI RCATGY 2 cut(s) 1044, 1166
NspV TTCGAA 1 cut(s) 152
PaeI GCATGC 1 cut(s) 1044
PciSI GCTCTTC 1 cut(s) 1146
PctI GAATGC 2 cut(s) 219, 949
PdmI GAANNNNTTC 1 cut(s) 821
PfeI GAWTC 3 cut(s) 266, 284, 1402
PflFI GACNNNGTC 1 cut(s) 120
PkrI GCNGC 5 cut(s) 49, 161, 949, 1006, 1342
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PpuMI RGGWCCY 1 cut(s) 90
PshBI ATTAAT 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 243
PspEI GGTNACC 2 cut(s) 460, 1442
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 3 cut(s) 891, 1456, 1573
PspOMI GGGCCC 1 cut(s) 889
PspPI GGNCC 5 cut(s) 90, 129, 889, 890, 1571
PspPPI RGGWCCY 1 cut(s) 90
PstI CTGCAG 1 cut(s) 1310
PstNI CAGNNNCTG 1 cut(s) 1466
PsuI RGATCY 1 cut(s) 995
PsyI GACNNNGTC 1 cut(s) 120
RsaI GTAC 2 cut(s) 34, 806
RsaNI GTAC 2 cut(s) 33, 805
RseI CAYNNNNRTG 2 cut(s) 365, 1251
SapI GCTCTTC 1 cut(s) 1146
SaqAI TTAA 2 cut(s) 774, 1101
SatI GCNGC 5 cut(s) 48, 160, 948, 1005, 1341
Sau3AI GATC 5 cut(s) 478, 654, 995, 1291, 1360
Sau96I GGNCC 5 cut(s) 90, 129, 889, 890, 1571
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 3 cut(s) 258, 553, 893
SfaNI GCATC 7 cut(s) 719, 769, 972, 1213, 1352, 1496, 1518
SfcI CTRYAG 2 cut(s) 909, 1306
SfuI TTCGAA 1 cut(s) 152
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 365, 1251
SmlI CTYRAG 1 cut(s) 1529
SmoI CTYRAG 1 cut(s) 1529
SphI GCATGC 1 cut(s) 1044
Sse9I AATT 8 cut(s) 190, 567, 638, 712, 741, 1008, 1321, 1586
SsiI CCGC 2 cut(s) 732, 1387
SspMI CTAG 6 cut(s) 186, 321, 866, 1157, 1202, 1451
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 2 cut(s) 1091, 1287
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 4 cut(s) 152, 553, 1346, 1375
TasI AATT 8 cut(s) 190, 567, 638, 712, 741, 1008, 1321, 1586
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 3 cut(s) 266, 284, 1402
Tru1I TTAA 2 cut(s) 774, 1101
Tru9I TTAA 2 cut(s) 774, 1101
TscAI CASTG 4 cut(s) 131, 523, 664, 759
TseFI GTSAC 2 cut(s) 442, 1442
TseI GCWGC 5 cut(s) 47, 159, 947, 1004, 1340
Tsp45I GTSAC 2 cut(s) 442, 1442
TspDTI ATGAA 8 cut(s) 212, 297, 353, 779, 830, 1074, 1557, 1571
TspRI CASTG 4 cut(s) 131, 523, 664, 759
Tth111I GACNNNGTC 1 cut(s) 120
VpaK11BI GGWCC 1 cut(s) 90
VspI ATTAAT 1 cut(s) 1101
XapI RAATTY 1 cut(s) 638
XceI RCATGY 2 cut(s) 1044, 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XmiI GTMKAC 3 cut(s) 14, 829, 937
XmnI GAANNNNTTC 1 cut(s) 821
XspI CTAG 6 cut(s) 186, 321, 866, 1157, 1202, 1451
Zsp2I ATGCAT 3 cut(s) 1228, 1336, 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.